Wall clock time and date at job start Tue Mar 31 2020 04:10:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52999 * 109.47232 * 2 1
4 4 N 1.46504 * 109.47120 * 179.97438 * 3 2 1
5 5 C 1.34774 * 120.00324 * 179.97438 * 4 3 2
6 6 O 1.21285 * 119.99621 * 0.02562 * 5 4 3
7 7 C 1.50694 * 120.00287 * 180.02562 * 5 4 3
8 8 C 1.52999 * 109.47083 * 180.02562 * 7 5 4
9 9 C 1.50704 * 109.47080 * 179.97438 * 8 7 5
10 10 O 1.21286 * 119.99950 * 359.97438 * 9 8 7
11 11 N 1.34774 * 120.00284 * 179.97438 * 9 8 7
12 12 C 1.46957 * 120.59483 * 179.97438 * 11 9 8
13 13 C 1.53378 * 108.63600 * 235.24927 * 12 11 9
14 14 N 1.46960 * 108.63441 * 310.57541 * 13 12 11
15 15 C 1.36929 * 120.59772 * 235.19929 * 14 13 12
16 16 H 1.08001 * 120.00154 * 26.80307 * 15 14 13
17 17 C 1.38818 * 120.00276 * 206.52209 * 15 14 13
18 18 N 1.31616 * 120.00013 * 217.35632 * 17 15 14
19 19 Si 1.86795 * 119.99797 * 37.35637 * 17 15 14
20 20 H 1.48497 * 109.47307 * 95.28345 * 19 17 15
21 21 H 1.48499 * 109.46918 * 215.28171 * 19 17 15
22 22 H 1.48500 * 109.47058 * 335.28197 * 19 17 15
23 23 C 1.46972 * 118.81093 * 55.48291 * 14 13 12
24 24 C 1.46973 * 120.59110 * 0.02618 * 11 9 8
25 25 H 1.09004 * 109.46872 * 300.00178 * 1 2 3
26 26 H 1.09002 * 109.47087 * 59.99563 * 1 2 3
27 27 H 1.08991 * 109.47351 * 180.02562 * 1 2 3
28 28 H 1.08992 * 109.47505 * 239.99776 * 2 1 3
29 29 H 1.09008 * 109.46844 * 119.99756 * 2 1 3
30 30 H 1.09004 * 109.47337 * 60.00107 * 3 2 1
31 31 H 1.08994 * 109.47261 * 299.99590 * 3 2 1
32 32 H 0.97002 * 119.99363 * 0.02562 * 4 3 2
33 33 H 1.09005 * 109.47341 * 60.00036 * 7 5 4
34 34 H 1.08999 * 109.47310 * 300.00089 * 7 5 4
35 35 H 1.08997 * 109.46961 * 60.00365 * 8 7 5
36 36 H 1.08994 * 109.47261 * 299.99740 * 8 7 5
37 37 H 1.09004 * 109.60829 * 115.50719 * 12 11 9
38 38 H 1.08993 * 109.75563 * 355.08178 * 12 11 9
39 39 H 1.09001 * 109.60979 * 190.83526 * 13 12 11
40 40 H 1.08998 * 109.74677 * 70.41012 * 13 12 11
41 41 H 0.97000 * 120.00046 * 180.02562 * 18 17 15
42 42 H 1.09002 * 109.61298 * 64.25873 * 23 14 13
43 43 H 1.08995 * 109.61261 * 184.77395 * 23 14 13
44 44 H 1.08994 * 109.60538 * 244.49313 * 24 11 9
45 45 H 1.09004 * 109.60748 * 4.83428 * 24 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4425 0.0006
5 6 4.1790 2.6096 0.0002
6 8 3.5726 3.6599 -0.0002
7 6 5.6860 2.6095 0.0003
8 6 6.1960 4.0520 0.0004
9 6 7.7030 4.0520 0.0011
10 8 8.3094 3.0016 0.0019
11 7 8.3770 5.2191 0.0008
12 6 9.8465 5.2343 0.0020
13 6 10.3270 6.0686 1.1959
14 7 9.6056 7.3489 1.1949
15 6 10.2902 8.5347 1.1956
16 1 11.2837 8.5849 0.7750
17 6 9.7051 9.6738 1.7315
18 7 9.9046 10.8449 1.1650
19 14 8.6345 9.5443 3.2568
20 1 9.4523 9.8352 4.4617
21 1 7.5222 10.5239 3.1653
22 1 8.0780 8.1711 3.3559
23 6 8.1359 7.3337 1.1994
24 6 7.6554 6.4995 0.0003
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 1.8934 -0.5138 -0.8899
29 1 1.8933 -0.5138 0.8901
30 1 1.6767 1.9564 0.8900
31 1 1.6768 1.9563 -0.8900
32 1 3.9900 0.6023 0.0006
33 1 6.0494 2.0954 -0.8896
34 1 6.0493 2.0960 0.8904
35 1 5.8327 4.5657 0.8904
36 1 5.8328 4.5659 -0.8895
37 1 10.2085 5.6795 -0.9248
38 1 10.2253 4.2162 0.0910
39 1 11.3978 6.2520 1.1067
40 1 10.1235 5.5346 2.1241
41 1 9.4961 11.6408 1.5397
42 1 7.7775 6.8864 2.1265
43 1 7.7593 8.3528 1.1125
44 1 7.8611 7.0349 -0.9265
45 1 6.5844 6.3158 0.0869
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330836197.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:10:45
Heat of formation + Delta-G solvation = -76.076138 kcal
Electronic energy + Delta-G solvation = -24151.348110 eV
Core-core repulsion = 20589.418462 eV
Total energy + Delta-G solvation = -3561.929649 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.32038 -40.55300 -38.60581 -36.81081 -35.61778 -34.20158 -33.60370 -33.22737
-32.07778 -29.12189 -27.85097 -26.01456 -24.90219 -24.56199 -22.57509 -22.24338
-21.18452 -20.08763 -18.99168 -18.17581 -17.53316 -17.23458 -17.02172 -16.80462
-16.55775 -16.47666 -16.00164 -15.72577 -15.31085 -14.95927 -14.79860 -14.44429
-14.27568 -14.15375 -13.81792 -13.74495 -13.52941 -13.28158 -13.07611 -12.84604
-12.72532 -12.48773 -12.23994 -12.17424 -12.10277 -12.02799 -11.87674 -11.75175
-11.42413 -10.93960 -10.81030 -10.66446 -10.10697 -9.85862 -8.88401 -8.24131
-5.39355 1.35615 1.47069 1.53200 1.60801 1.61331 1.90054 2.30602
2.44746 2.92503 3.38339 3.46492 3.79745 3.91424 4.06498 4.08839
4.11462 4.13096 4.19093 4.36082 4.36506 4.43009 4.57470 4.58978
4.66602 4.72238 4.76508 4.79384 4.85512 4.87791 4.88419 4.95349
5.00951 5.15372 5.18837 5.24570 5.34435 5.49455 5.50848 5.84777
6.10304 6.45362 6.53129 6.89112 7.13081 7.23709 7.61889 8.04765
8.93702
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.023237 B = 0.002907 C = 0.002675
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.666770 B = 9629.626610 C =10463.442906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.127 4.127
3 C 0.115 3.885
4 N -0.721 5.721
5 C 0.513 3.487
6 O -0.582 6.582
7 C -0.115 4.115
8 C -0.120 4.120
9 C 0.515 3.485
10 O -0.579 6.579
11 N -0.604 5.604
12 C 0.104 3.896
13 C 0.131 3.869
14 N -0.612 5.612
15 C -0.265 4.265
16 H 0.052 0.948
17 C -0.010 4.010
18 N -0.925 5.925
19 Si 0.897 3.103
20 H -0.303 1.303
21 H -0.294 1.294
22 H -0.238 1.238
23 C 0.125 3.875
24 C 0.096 3.904
25 H 0.054 0.946
26 H 0.055 0.945
27 H 0.070 0.930
28 H 0.079 0.921
29 H 0.078 0.922
30 H 0.054 0.946
31 H 0.056 0.944
32 H 0.417 0.583
33 H 0.113 0.887
34 H 0.110 0.890
35 H 0.101 0.899
36 H 0.107 0.893
37 H 0.065 0.935
38 H 0.095 0.905
39 H 0.074 0.926
40 H 0.030 0.970
41 H 0.263 0.737
42 H 0.037 0.963
43 H 0.061 0.939
44 H 0.070 0.930
45 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.148 -23.568 -3.294 28.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.165 4.165
3 C -0.009 4.009
4 N -0.374 5.374
5 C 0.301 3.699
6 O -0.462 6.462
7 C -0.155 4.155
8 C -0.160 4.160
9 C 0.305 3.695
10 O -0.460 6.460
11 N -0.336 5.336
12 C -0.020 4.020
13 C 0.006 3.994
14 N -0.337 5.337
15 C -0.393 4.393
16 H 0.070 0.930
17 C -0.209 4.209
18 N -0.567 5.567
19 Si 0.724 3.276
20 H -0.232 1.232
21 H -0.221 1.221
22 H -0.162 1.162
23 C -0.001 4.001
24 C -0.028 4.028
25 H 0.073 0.927
26 H 0.074 0.926
27 H 0.089 0.911
28 H 0.098 0.902
29 H 0.097 0.903
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.254 0.746
33 H 0.131 0.869
34 H 0.128 0.872
35 H 0.119 0.881
36 H 0.125 0.875
37 H 0.083 0.917
38 H 0.113 0.887
39 H 0.092 0.908
40 H 0.048 0.952
41 H 0.072 0.928
42 H 0.054 0.946
43 H 0.079 0.921
44 H 0.088 0.912
45 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -16.285 -23.212 -3.309 28.547
hybrid contribution 0.149 0.607 0.915 1.108
sum -16.137 -22.604 -2.394 27.876
Atomic orbital electron populations
1.21701 0.94316 1.02773 1.02160 1.21691 0.97122 0.93978 1.03710
1.21464 0.79240 0.98775 1.01416 1.45962 1.07707 1.08852 1.74855
1.20916 0.90627 0.83558 0.74811 1.90711 1.71407 1.32817 1.51304
1.21310 0.89968 0.97371 1.06852 1.21369 0.89621 0.98911 1.06126
1.21000 0.90933 0.82587 0.74982 1.90629 1.71273 1.31504 1.52625
1.48096 1.07284 1.06326 1.71890 1.22003 0.79629 1.01155 0.99165
1.21442 0.96757 0.85656 0.95566 1.44415 1.01324 1.01775 1.86151
1.18692 1.01489 0.85696 1.33457 0.93021 1.25689 0.99883 0.94533
1.00758 1.70196 1.47609 1.00244 1.38698 0.86615 0.78414 0.79304
0.83278 1.23184 1.22086 1.16151 1.21829 0.83764 0.98598 0.95899
1.22438 0.97190 0.83552 0.99614 0.92662 0.92558 0.91113 0.90230
0.90348 0.92725 0.92555 0.74617 0.86870 0.87217 0.88085 0.87519
0.91683 0.88716 0.90765 0.95220 0.92789 0.94553 0.92051 0.91159
0.87123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16
2 C -0.13 -0.94 6.05 30.59 0.19 -0.76 16
3 C 0.11 1.54 5.67 86.38 0.49 2.03 16
4 N -0.72 -9.90 5.56 -463.06 -2.57 -12.48 16
5 C 0.51 10.40 7.83 87.66 0.69 11.09 16
6 O -0.58 -16.71 15.98 -3.04 -0.05 -16.76 16
7 C -0.11 -2.11 4.99 29.85 0.15 -1.96 16
8 C -0.12 -2.75 3.33 29.85 0.10 -2.65 16
9 C 0.51 15.00 7.70 87.66 0.67 15.67 16
10 O -0.58 -19.21 15.39 -3.05 -0.05 -19.26 16
11 N -0.60 -19.20 2.95 -817.21 -2.41 -21.61 16
12 C 0.10 3.47 6.59 86.42 0.57 4.04 16
13 C 0.13 5.01 6.67 86.42 0.58 5.59 16
14 N -0.61 -27.86 2.71 -697.41 -1.89 -29.74 16
15 C -0.26 -14.45 9.84 84.04 0.83 -13.62 16
16 H 0.05 3.07 8.05 -2.91 -0.02 3.05 16
17 C -0.01 -0.59 4.80 84.86 0.41 -0.18 16
18 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16
19 Si 0.90 43.37 26.46 68.60 1.82 45.19 16
20 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16
21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16
22 H -0.24 -10.60 4.99 99.48 0.50 -10.10 16
23 C 0.13 5.03 4.58 86.55 0.40 5.42 16
24 C 0.10 3.07 6.52 86.55 0.56 3.63 16
25 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16
26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16
27 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16
28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16
29 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16
30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16
31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.42 3.15 8.47 -92.71 -0.79 2.37 16
33 H 0.11 1.83 8.10 -2.38 -0.02 1.81 16
34 H 0.11 1.85 8.10 -2.39 -0.02 1.84 16
35 H 0.10 2.36 7.68 -2.39 -0.02 2.34 16
36 H 0.11 2.33 7.87 -2.39 -0.02 2.32 16
37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
38 H 0.09 2.98 7.00 -2.39 -0.02 2.97 16
39 H 0.07 2.78 7.93 -2.39 -0.02 2.77 16
40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16
41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16
42 H 0.04 1.45 6.78 -2.39 -0.02 1.43 16
43 H 0.06 2.68 5.59 -2.39 -0.01 2.67 16
44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
45 H 0.11 2.84 5.91 -2.39 -0.01 2.82 16
Total: -1.00 -71.68 357.92 1.47 -70.21
By element:
Atomic # 1 Polarization: 12.11 SS G_CDS: -0.02 Total: 12.09 kcal
Atomic # 6 Polarization: 21.58 SS G_CDS: 6.34 Total: 27.92 kcal
Atomic # 7 Polarization: -112.82 SS G_CDS: -6.57 Total: -119.39 kcal
Atomic # 8 Polarization: -35.92 SS G_CDS: -0.10 Total: -36.02 kcal
Atomic # 14 Polarization: 43.37 SS G_CDS: 1.82 Total: 45.19 kcal
Total: -71.68 1.47 -70.21 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330836197.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.868 kcal
(2) G-P(sol) polarization free energy of solvation -71.681 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.549 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds