Wall clock time and date at job start Tue Mar 31 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.53004 * 109.47028 * 240.00281 * 2 1 3 5 5 C 1.50693 * 109.47207 * 120.00414 * 2 1 3 6 6 O 1.21289 * 120.00206 * 359.97438 * 5 2 1 7 7 N 1.34777 * 119.99945 * 179.97438 * 5 2 1 8 8 C 1.46500 * 119.99906 * 180.02562 * 7 5 2 9 9 C 1.50703 * 109.47076 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00143 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46965 * 120.59323 * 179.97438 * 11 9 8 13 13 C 1.53374 * 108.63702 * 235.25034 * 12 11 9 14 14 N 1.46968 * 108.63080 * 310.57409 * 13 12 11 15 15 C 1.36934 * 120.58904 * 235.19759 * 14 13 12 16 16 H 1.08009 * 119.99376 * 151.84519 * 15 14 13 17 17 C 1.38804 * 120.00824 * 331.57781 * 15 14 13 18 18 N 1.31627 * 119.99593 * 342.82852 * 17 15 14 19 19 Si 1.86794 * 120.00637 * 162.82757 * 17 15 14 20 20 H 1.48504 * 109.47167 * 59.99793 * 19 17 15 21 21 H 1.48497 * 109.47420 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47203 * 300.00107 * 19 17 15 23 23 C 1.46960 * 118.80978 * 55.48071 * 14 13 12 24 24 C 1.46963 * 120.59877 * 0.02562 * 11 9 8 25 25 H 1.08998 * 109.46633 * 300.00124 * 1 2 3 26 26 H 1.08995 * 109.47021 * 59.99669 * 1 2 3 27 27 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47641 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47061 * 300.00584 * 3 2 1 30 30 H 1.09007 * 109.46798 * 60.00276 * 3 2 1 31 31 H 1.09003 * 109.47073 * 300.00606 * 4 2 1 32 32 H 1.09007 * 109.47089 * 59.99723 * 4 2 1 33 33 H 1.08997 * 109.47439 * 179.97438 * 4 2 1 34 34 H 0.97002 * 120.00301 * 359.97438 * 7 5 2 35 35 H 1.09001 * 109.47462 * 59.99997 * 8 7 5 36 36 H 1.09007 * 109.47109 * 300.00036 * 8 7 5 37 37 H 1.08996 * 109.61476 * 115.50253 * 12 11 9 38 38 H 1.09010 * 109.75120 * 355.07348 * 12 11 9 39 39 H 1.09003 * 109.60871 * 190.82753 * 13 12 11 40 40 H 1.08999 * 109.74926 * 70.40483 * 13 12 11 41 41 H 0.97003 * 120.00012 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.61464 * 64.26783 * 23 14 13 43 43 H 1.09004 * 109.60410 * 184.77119 * 23 14 13 44 44 H 1.08997 * 109.60925 * 244.49552 * 24 11 9 45 45 H 1.09004 * 109.60691 * 4.83230 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 8 1.2442 -1.1711 2.0290 7 7 3.3575 -0.8341 1.4433 8 6 3.8458 -1.5252 2.6392 9 6 5.3528 -1.5251 2.6392 10 8 5.9592 -0.9999 1.7297 11 7 6.0267 -2.1087 3.6500 12 6 7.4963 -2.1168 3.6630 13 6 7.9774 -3.5677 3.7879 14 7 7.2558 -4.2079 4.8967 15 6 7.9406 -4.8017 5.9231 16 1 7.4967 -4.8596 6.9060 17 6 9.2027 -5.3341 5.6991 18 7 9.6051 -5.5787 4.4700 19 14 10.3301 -5.7036 7.1419 20 1 9.6783 -6.6911 8.0393 21 1 11.6108 -6.2624 6.6390 22 1 10.5974 -4.4517 7.8946 23 6 5.7863 -4.2048 4.8808 24 6 5.3052 -2.7495 4.7585 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9878 -0.4660 0.8045 35 1 3.4822 -2.5528 2.6389 36 1 3.4827 -1.0116 3.5295 37 1 7.8578 -1.5371 4.5123 38 1 7.8752 -1.6842 2.7370 39 1 9.0481 -3.5818 3.9916 40 1 7.7744 -4.1041 2.8610 41 1 10.4870 -5.9511 4.3135 42 1 5.4283 -4.7838 4.0295 43 1 5.4096 -4.6399 5.8065 44 1 5.5103 -2.2150 5.6860 45 1 4.2343 -2.7330 4.5559 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330903350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:55 Heat of formation + Delta-G solvation = -54.208904 kcal Electronic energy + Delta-G solvation = -24781.719178 eV Core-core repulsion = 21220.737764 eV Total energy + Delta-G solvation = -3560.981414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50342 -39.51554 -36.98838 -35.82768 -34.51852 -34.02114 -31.26824 -30.65350 -28.37614 -27.63803 -27.30976 -26.55740 -23.77767 -23.15316 -22.46693 -20.65228 -19.80231 -18.68487 -17.36940 -16.80695 -16.38201 -15.95453 -15.79856 -15.23465 -14.97583 -14.81288 -14.20529 -14.01657 -13.89371 -13.74081 -13.52013 -13.34721 -12.93117 -12.86346 -12.62456 -12.49044 -12.18360 -12.15563 -11.97622 -11.80469 -11.28400 -11.23230 -11.19864 -10.86280 -10.81001 -10.64010 -10.31994 -10.03423 -9.95193 -9.83670 -9.57836 -9.23425 -8.65333 -8.37582 -6.77822 -5.89732 -3.35428 2.51538 2.74340 2.83371 3.32491 3.38954 3.39256 3.46138 4.37621 4.39803 4.48611 4.57715 4.59384 4.96452 5.16567 5.25736 5.27613 5.29412 5.31938 5.35217 5.44438 5.53543 5.59735 5.64223 5.65711 5.67974 5.81537 5.82442 5.92939 6.00446 6.03466 6.19444 6.25576 6.31192 6.41769 6.62150 6.75780 7.16336 7.40273 7.47009 7.67232 7.72142 8.10226 8.30656 8.31354 9.06876 9.69394 10.25786 11.17883 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039288 B = 0.002908 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.509260 B = 9625.435915 C = 9896.196984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.143 4.143 5 C 0.523 3.477 6 O -0.542 6.542 7 N -0.714 5.714 8 C 0.101 3.899 9 C 0.504 3.496 10 O -0.556 6.556 11 N -0.589 5.589 12 C 0.087 3.913 13 C 0.158 3.842 14 N -0.591 5.591 15 C -0.260 4.260 16 H 0.068 0.932 17 C 0.005 3.995 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.130 3.870 24 C 0.084 3.916 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.024 0.976 41 H 0.257 0.743 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 11.709 -8.042 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.309 3.691 6 O -0.419 6.419 7 N -0.369 5.369 8 C -0.027 4.027 9 C 0.291 3.709 10 O -0.436 6.436 11 N -0.320 5.320 12 C -0.036 4.036 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.389 4.389 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.003 3.997 24 C -0.040 4.040 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.249 0.751 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.923 11.538 -7.959 19.756 hybrid contribution 0.994 -0.212 0.538 1.150 sum -12.929 11.326 -7.421 18.722 Atomic orbital electron populations 1.21659 0.91852 1.02897 1.02004 1.20799 0.98027 0.96470 0.93496 1.21886 1.01562 0.93640 1.02866 1.21894 1.01608 1.00641 0.95880 1.20589 0.81673 0.79417 0.87395 1.90695 1.55378 1.48765 1.47086 1.45776 1.07537 1.58501 1.25136 1.21113 0.91994 0.99720 0.89831 1.20371 0.89360 0.78821 0.82387 1.90633 1.69803 1.47018 1.36123 1.48023 1.08189 1.53897 1.21927 1.22563 0.77549 1.01791 1.01720 1.21197 0.98985 0.86502 0.90135 1.44015 0.98956 1.63828 1.24578 1.19153 0.99287 1.31757 0.88729 0.91425 1.25099 0.99932 0.98100 0.96330 1.70011 1.19797 1.45904 1.18761 0.86322 0.80104 0.78174 0.81867 1.20786 1.21570 1.20903 1.21358 0.86874 0.91632 0.99838 1.22562 0.95144 0.97116 0.89226 0.91922 0.92021 0.91876 0.91851 0.91268 0.92015 0.91930 0.91269 0.91815 0.75095 0.88428 0.88649 0.91914 0.90007 0.88135 0.95807 0.93336 0.95735 0.91222 0.91086 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 7.76 37.16 0.29 -0.81 16 2 C -0.08 -0.77 0.87 -155.66 -0.14 -0.91 16 3 C -0.14 -1.07 8.37 37.16 0.31 -0.76 16 4 C -0.14 -1.12 8.37 37.16 0.31 -0.81 16 5 C 0.52 6.54 6.48 -10.99 -0.07 6.47 16 6 O -0.54 -8.52 15.98 5.55 0.09 -8.43 16 7 N -0.71 -8.89 5.31 -61.47 -0.33 -9.21 16 8 C 0.10 1.34 4.50 -5.19 -0.02 1.32 16 9 C 0.50 8.17 7.77 -10.98 -0.09 8.08 16 10 O -0.56 -10.25 15.08 5.56 0.08 -10.16 16 11 N -0.59 -10.12 2.95 -172.24 -0.51 -10.63 16 12 C 0.09 1.67 6.59 -3.60 -0.02 1.65 16 13 C 0.16 3.66 5.51 -3.59 -0.02 3.64 16 14 N -0.59 -14.06 2.96 -171.80 -0.51 -14.57 16 15 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 16 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 18 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 19 Si 0.91 20.95 29.59 -169.99 -5.03 15.92 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 C 0.13 2.51 6.70 -3.40 -0.02 2.48 16 24 C 0.08 1.31 6.52 -3.39 -0.02 1.29 16 25 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 7.56 -51.93 -0.39 0.11 16 34 H 0.41 4.91 6.27 -40.82 -0.26 4.66 16 35 H 0.10 1.29 7.72 -51.93 -0.40 0.89 16 36 H 0.10 1.18 7.91 -51.92 -0.41 0.77 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.57 7.00 -51.92 -0.36 1.20 16 39 H 0.10 2.57 6.00 -51.93 -0.31 2.26 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 0.94 5.91 -51.93 -0.31 0.63 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.26 357.86 -7.35 -38.61 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.44 Total: 3.09 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 0.28 Total: 14.74 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.72 Total: -59.16 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.17 Total: -18.59 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.26 -7.35 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330903350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.601 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds