Wall clock time and date at job start Tue Mar 31 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.53004 * 109.47028 * 240.00281 * 2 1 3 5 5 C 1.50693 * 109.47207 * 120.00414 * 2 1 3 6 6 O 1.21289 * 120.00206 * 359.97438 * 5 2 1 7 7 N 1.34777 * 119.99945 * 179.97438 * 5 2 1 8 8 C 1.46500 * 119.99906 * 180.02562 * 7 5 2 9 9 C 1.50703 * 109.47076 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00143 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46965 * 120.59323 * 179.97438 * 11 9 8 13 13 C 1.53374 * 108.63702 * 235.25034 * 12 11 9 14 14 N 1.46968 * 108.63080 * 310.57409 * 13 12 11 15 15 C 1.36934 * 120.58904 * 235.19759 * 14 13 12 16 16 H 1.08009 * 119.99376 * 151.84519 * 15 14 13 17 17 C 1.38804 * 120.00824 * 331.57781 * 15 14 13 18 18 N 1.31627 * 119.99593 * 342.82852 * 17 15 14 19 19 Si 1.86794 * 120.00637 * 162.82757 * 17 15 14 20 20 H 1.48504 * 109.47167 * 59.99793 * 19 17 15 21 21 H 1.48497 * 109.47420 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47203 * 300.00107 * 19 17 15 23 23 C 1.46960 * 118.80978 * 55.48071 * 14 13 12 24 24 C 1.46963 * 120.59877 * 0.02562 * 11 9 8 25 25 H 1.08998 * 109.46633 * 300.00124 * 1 2 3 26 26 H 1.08995 * 109.47021 * 59.99669 * 1 2 3 27 27 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47641 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47061 * 300.00584 * 3 2 1 30 30 H 1.09007 * 109.46798 * 60.00276 * 3 2 1 31 31 H 1.09003 * 109.47073 * 300.00606 * 4 2 1 32 32 H 1.09007 * 109.47089 * 59.99723 * 4 2 1 33 33 H 1.08997 * 109.47439 * 179.97438 * 4 2 1 34 34 H 0.97002 * 120.00301 * 359.97438 * 7 5 2 35 35 H 1.09001 * 109.47462 * 59.99997 * 8 7 5 36 36 H 1.09007 * 109.47109 * 300.00036 * 8 7 5 37 37 H 1.08996 * 109.61476 * 115.50253 * 12 11 9 38 38 H 1.09010 * 109.75120 * 355.07348 * 12 11 9 39 39 H 1.09003 * 109.60871 * 190.82753 * 13 12 11 40 40 H 1.08999 * 109.74926 * 70.40483 * 13 12 11 41 41 H 0.97003 * 120.00012 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.61464 * 64.26783 * 23 14 13 43 43 H 1.09004 * 109.60410 * 184.77119 * 23 14 13 44 44 H 1.08997 * 109.60925 * 244.49552 * 24 11 9 45 45 H 1.09004 * 109.60691 * 4.83230 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 8 1.2442 -1.1711 2.0290 7 7 3.3575 -0.8341 1.4433 8 6 3.8458 -1.5252 2.6392 9 6 5.3528 -1.5251 2.6392 10 8 5.9592 -0.9999 1.7297 11 7 6.0267 -2.1087 3.6500 12 6 7.4963 -2.1168 3.6630 13 6 7.9774 -3.5677 3.7879 14 7 7.2558 -4.2079 4.8967 15 6 7.9406 -4.8017 5.9231 16 1 7.4967 -4.8596 6.9060 17 6 9.2027 -5.3341 5.6991 18 7 9.6051 -5.5787 4.4700 19 14 10.3301 -5.7036 7.1419 20 1 9.6783 -6.6911 8.0393 21 1 11.6108 -6.2624 6.6390 22 1 10.5974 -4.4517 7.8946 23 6 5.7863 -4.2048 4.8808 24 6 5.3052 -2.7495 4.7585 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9878 -0.4660 0.8045 35 1 3.4822 -2.5528 2.6389 36 1 3.4827 -1.0116 3.5295 37 1 7.8578 -1.5371 4.5123 38 1 7.8752 -1.6842 2.7370 39 1 9.0481 -3.5818 3.9916 40 1 7.7744 -4.1041 2.8610 41 1 10.4870 -5.9511 4.3135 42 1 5.4283 -4.7838 4.0295 43 1 5.4096 -4.6399 5.8065 44 1 5.5103 -2.2150 5.6860 45 1 4.2343 -2.7330 4.5559 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330903350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:54 Heat of formation + Delta-G solvation = -74.996086 kcal Electronic energy + Delta-G solvation = -24782.620578 eV Core-core repulsion = 21220.737764 eV Total energy + Delta-G solvation = -3561.882814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.61376 -40.74119 -38.55474 -36.62824 -35.71976 -35.60632 -33.11297 -32.21623 -29.64436 -28.39000 -28.22695 -27.79602 -25.48427 -24.55450 -23.62482 -22.19514 -20.84564 -20.11785 -18.73404 -18.03968 -17.72992 -17.17859 -17.02517 -16.64651 -16.42601 -16.03510 -15.50822 -15.31937 -15.21755 -15.03276 -14.76940 -14.72226 -14.21119 -14.14635 -13.46931 -13.41145 -13.30597 -13.13924 -13.05231 -12.87435 -12.62830 -12.61885 -12.51598 -12.33519 -12.04428 -11.90079 -11.89090 -11.85755 -11.71623 -11.00362 -10.79671 -10.61080 -10.27572 -9.90501 -8.68578 -7.90035 -5.38778 1.40984 1.48750 1.50848 1.57244 1.57697 1.68658 2.29541 2.50606 3.25293 3.30361 3.56506 3.60233 3.84040 3.92648 4.16943 4.20057 4.23028 4.25452 4.32932 4.38664 4.49364 4.63699 4.72066 4.72425 4.76439 4.81015 4.83572 4.94919 4.96318 5.01987 5.03298 5.17827 5.21803 5.25993 5.32757 5.38057 5.41891 5.58185 5.64880 6.34092 6.35786 6.43425 6.95664 7.08461 7.13161 7.77574 8.30372 9.15257 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039288 B = 0.002908 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.509260 B = 9625.435915 C = 9896.196984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.141 4.141 5 C 0.520 3.480 6 O -0.577 6.577 7 N -0.713 5.713 8 C 0.107 3.893 9 C 0.507 3.493 10 O -0.578 6.578 11 N -0.595 5.595 12 C 0.104 3.896 13 C 0.169 3.831 14 N -0.609 5.609 15 C -0.265 4.265 16 H 0.075 0.925 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.124 3.876 24 C 0.095 3.905 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.070 0.930 40 H -0.007 1.007 41 H 0.251 0.749 42 H 0.016 0.984 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 13.163 -7.882 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.085 4.085 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.308 3.692 6 O -0.456 6.456 7 N -0.367 5.367 8 C -0.020 4.020 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.326 5.326 12 C -0.021 4.021 13 C 0.042 3.958 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.093 0.907 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.202 1.202 23 C -0.002 4.002 24 C -0.028 4.028 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.253 0.747 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.011 0.989 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.565 13.012 -7.794 21.733 hybrid contribution 1.427 -0.679 0.448 1.643 sum -14.138 12.333 -7.346 20.148 Atomic orbital electron populations 1.21665 0.91495 1.02292 1.02786 1.20870 0.98256 0.97156 0.92224 1.21893 1.01522 0.92480 1.03779 1.21905 1.01496 1.00311 0.96118 1.21253 0.81137 0.78813 0.87977 1.90677 1.56070 1.50353 1.48544 1.45815 1.07779 1.58256 1.24892 1.21078 0.89398 1.00483 0.91043 1.20808 0.90480 0.77790 0.81351 1.90625 1.70629 1.47844 1.36817 1.48048 1.07277 1.54470 1.22839 1.22148 0.79295 0.98730 1.01884 1.20902 0.97554 0.88617 0.88709 1.44274 1.00937 1.63973 1.24098 1.19534 0.99587 1.30656 0.89659 0.90690 1.25855 1.01474 0.98755 0.98459 1.70172 1.19772 1.47557 1.20726 0.85313 0.77817 0.78095 0.79027 1.20026 1.22412 1.20209 1.21559 0.84225 0.94302 1.00072 1.22530 0.96841 0.94188 0.89278 0.92955 0.89402 0.93190 0.91910 0.89000 0.92505 0.92800 0.88929 0.91990 0.74719 0.87886 0.86972 0.91289 0.90145 0.91141 0.98877 0.94012 0.96587 0.90090 0.89992 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 7.76 71.98 0.56 -1.38 16 2 C -0.08 -1.34 0.87 -52.93 -0.05 -1.38 16 3 C -0.14 -1.76 8.37 71.98 0.60 -1.16 16 4 C -0.14 -1.91 8.37 71.98 0.60 -1.31 16 5 C 0.52 12.25 6.48 87.65 0.57 12.82 16 6 O -0.58 -17.47 15.98 -3.06 -0.05 -17.52 16 7 N -0.71 -16.52 5.31 -466.77 -2.48 -19.00 16 8 C 0.11 2.62 4.50 85.63 0.38 3.00 16 9 C 0.51 15.61 7.77 87.66 0.68 16.29 16 10 O -0.58 -20.68 15.08 -3.02 -0.05 -20.72 16 11 N -0.59 -19.56 2.95 -817.24 -2.41 -21.97 16 12 C 0.10 3.97 6.59 86.42 0.57 4.54 16 13 C 0.17 8.02 5.51 86.42 0.48 8.50 16 14 N -0.61 -29.08 2.96 -697.44 -2.06 -31.14 16 15 C -0.26 -13.81 9.57 84.03 0.80 -13.00 16 16 H 0.08 3.73 7.89 -2.91 -0.02 3.71 16 17 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 18 N -0.94 -54.37 11.20 21.65 0.24 -54.13 16 19 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.12 4.64 6.70 86.55 0.58 5.22 16 24 C 0.10 2.73 6.52 86.55 0.56 3.29 16 25 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 28 H 0.06 0.81 7.57 -2.39 -0.02 0.79 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.87 7.56 -2.39 -0.02 0.85 16 34 H 0.41 9.25 6.27 -92.71 -0.58 8.67 16 35 H 0.10 2.47 7.72 -2.39 -0.02 2.45 16 36 H 0.11 2.43 7.91 -2.38 -0.02 2.41 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.08 3.09 7.00 -2.38 -0.02 3.08 16 39 H 0.07 3.77 6.00 -2.39 -0.01 3.75 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.11 2.41 5.91 -2.39 -0.01 2.40 16 Total: -1.00 -68.47 357.86 2.38 -66.09 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.39 Total: 19.78 kcal Atomic # 6 Polarization: 26.39 SS G_CDS: 6.76 Total: 33.15 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -6.71 Total: -126.24 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.09 Total: -38.24 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.47 2.38 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330903350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.903 kcal (2) G-P(sol) polarization free energy of solvation -68.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds