Wall clock time and date at job start Tue Mar 31 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46736 * 2 1 4 4 C 1.53003 * 109.46982 * 240.00202 * 2 1 3 5 5 N 1.46499 * 109.47105 * 120.00131 * 2 1 3 6 6 C 1.34767 * 119.99985 * 60.00206 * 5 2 1 7 7 O 1.21284 * 120.00556 * 0.02562 * 6 5 2 8 8 C 1.50704 * 119.99800 * 179.97438 * 6 5 2 9 9 N 1.46504 * 109.47101 * 179.97438 * 8 6 5 10 10 C 1.34770 * 120.00150 * 180.02562 * 9 8 6 11 11 O 1.21585 * 120.00054 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00251 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99925 * 180.27750 * 12 10 9 14 14 C 1.53004 * 109.46739 * 178.21159 * 13 12 10 15 15 C 1.50692 * 115.55352 * 65.12262 * 14 13 12 16 16 H 1.07995 * 120.00193 * 265.41134 * 15 14 13 17 17 C 1.37879 * 119.99934 * 85.40862 * 15 14 13 18 18 N 1.31511 * 120.00128 * 353.56337 * 17 15 14 19 19 Si 1.86801 * 120.00225 * 173.56516 * 17 15 14 20 20 H 1.48495 * 109.47197 * 59.99668 * 19 17 15 21 21 H 1.48502 * 109.47361 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46765 * 300.00251 * 19 17 15 23 23 C 1.53008 * 117.49451 * 279.44994 * 14 13 12 24 24 C 1.53002 * 117.49601 * 210.79511 * 14 13 12 25 25 H 1.09000 * 109.47353 * 299.99485 * 1 2 3 26 26 H 1.09001 * 109.47265 * 59.99929 * 1 2 3 27 27 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46929 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47301 * 300.00049 * 3 2 1 30 30 H 1.09000 * 109.46779 * 60.00164 * 3 2 1 31 31 H 1.08994 * 109.47019 * 300.00027 * 4 2 1 32 32 H 1.09004 * 109.46869 * 59.99484 * 4 2 1 33 33 H 1.08999 * 109.47052 * 179.97438 * 4 2 1 34 34 H 0.97001 * 119.99504 * 239.99637 * 5 2 1 35 35 H 1.09000 * 109.47102 * 60.00527 * 8 6 5 36 36 H 1.08996 * 109.47128 * 299.99640 * 8 6 5 37 37 H 0.97007 * 119.99823 * 0.02562 * 9 8 6 38 38 H 0.96998 * 119.99605 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46866 * 298.20738 * 13 12 10 40 40 H 1.08996 * 109.47239 * 58.20744 * 13 12 10 41 41 H 0.97003 * 120.00760 * 185.06267 * 18 17 15 42 42 H 1.08996 * 117.50090 * 0.02562 * 23 14 13 43 43 H 1.08999 * 117.49010 * 145.02348 * 23 14 13 44 44 H 1.08996 * 117.49775 * 214.98139 * 24 14 13 45 45 H 1.09005 * 117.49534 * 359.97353 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -1.9809 1.4094 7 8 0.9960 -2.5705 0.6108 8 6 2.1957 -2.6915 2.6396 9 7 1.7068 -4.0725 2.6399 10 6 2.0322 -4.9023 3.6507 11 8 2.7319 -4.5050 4.5622 12 7 1.5829 -6.1730 3.6508 13 6 1.9317 -7.0733 4.7528 14 6 1.2630 -8.4317 4.5326 15 6 1.7354 -9.2008 3.3259 16 1 1.1984 -9.1235 2.3921 17 6 2.8532 -10.0031 3.4140 18 7 3.5799 -10.0004 4.5101 19 14 3.3356 -11.0941 1.9764 20 1 3.5916 -10.2522 0.7802 21 1 4.5651 -11.8523 2.3210 22 1 2.2331 -12.0454 1.6853 23 6 -0.2103 -8.5654 4.9233 24 6 0.8714 -9.2358 5.7740 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6765 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 2.5761 -0.2192 1.8346 35 1 1.8326 -2.1778 3.5298 36 1 3.2856 -2.6916 2.6391 37 1 1.1488 -4.3897 1.9125 38 1 1.0249 -6.4902 2.9235 39 1 3.0134 -7.2022 4.7880 40 1 1.5858 -6.6463 5.6941 41 1 4.4059 -10.5078 4.5458 42 1 -0.7032 -7.6856 5.3368 43 1 -0.8376 -9.2100 4.3077 44 1 0.9553 -10.3211 5.7177 45 1 1.0907 -8.7971 6.7475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331783242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:47 Heat of formation + Delta-G solvation = -51.026394 kcal Electronic energy + Delta-G solvation = -24095.069349 eV Core-core repulsion = 20534.225939 eV Total energy + Delta-G solvation = -3560.843410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52107 -39.21399 -36.99351 -36.60447 -34.03610 -33.22071 -32.38516 -31.93085 -27.94615 -27.73022 -27.52570 -25.83936 -24.79162 -21.55162 -21.14078 -20.27561 -19.85218 -19.34089 -18.24587 -16.86095 -16.34305 -16.06531 -15.87454 -15.38784 -14.83601 -14.61633 -14.35448 -14.24990 -13.99018 -13.82316 -13.29847 -13.14997 -12.88281 -12.79317 -12.58352 -12.43560 -12.33089 -11.90009 -11.68150 -11.54101 -11.44287 -11.35473 -10.96567 -10.88789 -10.51849 -10.23697 -9.86372 -9.75022 -9.50192 -9.40041 -8.95643 -8.87762 -8.46049 -8.22397 -7.94579 -6.04331 -4.12757 2.38518 2.64776 3.30058 3.35499 3.37296 3.39809 3.79566 4.30271 4.38506 4.56504 4.60425 4.71903 4.89845 5.16037 5.23718 5.27383 5.33054 5.35332 5.41108 5.42886 5.45267 5.50551 5.65620 5.66583 6.01572 6.06674 6.08890 6.28370 6.37979 6.50331 6.62322 6.66093 6.73483 6.88885 7.12127 7.23297 7.35841 7.45194 7.50131 7.63942 7.85004 7.95091 8.37954 8.68170 8.87864 9.20330 9.53800 11.03501 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.002936 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.321882 B = 9534.395970 C =10119.391981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.165 4.165 5 N -0.723 5.723 6 C 0.513 3.487 7 O -0.530 6.530 8 C 0.123 3.877 9 N -0.744 5.744 10 C 0.701 3.299 11 O -0.606 6.606 12 N -0.717 5.717 13 C 0.182 3.818 14 C 0.028 3.972 15 C -0.501 4.501 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.211 4.211 24 C -0.147 4.147 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.405 0.595 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 21.040 -7.759 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.213 4.213 4 C -0.223 4.223 5 N -0.376 5.376 6 C 0.299 3.701 7 O -0.406 6.406 8 C -0.006 4.006 9 N -0.404 5.404 10 C 0.401 3.599 11 O -0.486 6.486 12 N -0.369 5.369 13 C 0.059 3.941 14 C 0.027 3.973 15 C -0.538 4.538 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.242 0.758 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.342 20.807 -7.370 22.325 hybrid contribution 0.216 -0.613 -1.077 1.258 sum -3.126 20.194 -8.447 22.111 Atomic orbital electron populations 1.22236 0.94110 1.04215 1.01713 1.20358 0.94522 0.91732 0.85077 1.22093 1.01685 0.94433 1.03081 1.22241 1.01017 1.02924 0.96155 1.46076 1.54134 1.11897 1.25501 1.20672 0.79968 0.81956 0.87457 1.90645 1.37532 1.65879 1.46537 1.20754 1.00595 0.83418 0.95789 1.44738 1.58117 1.10603 1.26979 1.15924 0.80584 0.81340 0.82045 1.90866 1.43373 1.76688 1.37693 1.45118 1.54856 1.09218 1.27736 1.20867 1.00582 0.87437 0.85237 1.19033 0.90267 0.92196 0.95785 1.20312 1.12278 1.26028 0.95219 0.92241 1.24979 0.96335 0.96169 0.95521 1.69964 1.13471 1.41154 1.26493 0.86691 0.77832 0.80891 0.82755 1.20249 1.21307 1.20219 1.23022 0.93730 1.02058 1.05981 1.22492 1.02574 0.99137 0.94348 0.92695 0.91898 0.90165 0.91843 0.90821 0.91863 0.90135 0.91905 0.92646 0.76337 0.88929 0.88849 0.75786 0.76895 0.91140 0.94674 0.92809 0.91621 0.90392 0.89823 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.40 37.16 0.31 -1.05 16 2 C 0.17 1.27 1.06 -131.81 -0.14 1.13 16 3 C -0.16 -0.77 8.59 37.16 0.32 -0.45 16 4 C -0.17 -1.42 8.40 37.16 0.31 -1.10 16 5 N -0.72 -5.65 5.11 -47.60 -0.24 -5.89 16 6 C 0.51 5.64 7.32 -10.99 -0.08 5.56 16 7 O -0.53 -7.31 11.88 5.55 0.07 -7.24 16 8 C 0.12 1.48 6.15 -5.19 -0.03 1.45 16 9 N -0.74 -11.43 5.53 -66.41 -0.37 -11.79 16 10 C 0.70 13.76 8.57 -86.92 -0.74 13.02 16 11 O -0.61 -13.82 16.34 5.29 0.09 -13.73 16 12 N -0.72 -14.54 5.48 -65.22 -0.36 -14.90 16 13 C 0.18 4.24 5.50 -4.04 -0.02 4.22 16 14 C 0.03 0.67 1.38 -155.66 -0.21 0.45 16 15 C -0.50 -13.09 8.63 -34.44 -0.30 -13.39 16 16 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 17 C 0.07 1.99 5.39 -17.82 -0.10 1.90 16 18 N -0.87 -24.54 12.91 55.43 0.72 -23.83 16 19 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.21 -4.45 9.96 -26.69 -0.27 -4.71 16 24 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.88 6.17 -51.93 -0.32 0.56 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 2.10 8.47 -40.82 -0.35 1.76 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.41 5.94 7.45 -40.82 -0.30 5.64 16 38 H 0.40 7.48 8.38 -40.82 -0.34 7.14 16 39 H 0.07 1.88 8.14 -51.93 -0.42 1.45 16 40 H 0.03 0.81 8.09 -51.93 -0.42 0.38 16 41 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 44 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -31.75 371.74 -8.24 -39.98 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.52 Total: 12.59 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.20 Total: 3.35 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.25 Total: -56.42 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.15 Total: -20.98 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.75 -8.24 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.042 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds