Wall clock time and date at job start Tue Mar 31 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46736 * 2 1 4 4 C 1.53003 * 109.46982 * 240.00202 * 2 1 3 5 5 N 1.46499 * 109.47105 * 120.00131 * 2 1 3 6 6 C 1.34767 * 119.99985 * 60.00206 * 5 2 1 7 7 O 1.21284 * 120.00556 * 0.02562 * 6 5 2 8 8 C 1.50704 * 119.99800 * 179.97438 * 6 5 2 9 9 N 1.46504 * 109.47101 * 179.97438 * 8 6 5 10 10 C 1.34770 * 120.00150 * 180.02562 * 9 8 6 11 11 O 1.21585 * 120.00054 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00251 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99925 * 180.27750 * 12 10 9 14 14 C 1.53004 * 109.46739 * 178.21159 * 13 12 10 15 15 C 1.50692 * 115.55352 * 65.12262 * 14 13 12 16 16 H 1.07995 * 120.00193 * 265.41134 * 15 14 13 17 17 C 1.37879 * 119.99934 * 85.40862 * 15 14 13 18 18 N 1.31511 * 120.00128 * 353.56337 * 17 15 14 19 19 Si 1.86801 * 120.00225 * 173.56516 * 17 15 14 20 20 H 1.48495 * 109.47197 * 59.99668 * 19 17 15 21 21 H 1.48502 * 109.47361 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46765 * 300.00251 * 19 17 15 23 23 C 1.53008 * 117.49451 * 279.44994 * 14 13 12 24 24 C 1.53002 * 117.49601 * 210.79511 * 14 13 12 25 25 H 1.09000 * 109.47353 * 299.99485 * 1 2 3 26 26 H 1.09001 * 109.47265 * 59.99929 * 1 2 3 27 27 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46929 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47301 * 300.00049 * 3 2 1 30 30 H 1.09000 * 109.46779 * 60.00164 * 3 2 1 31 31 H 1.08994 * 109.47019 * 300.00027 * 4 2 1 32 32 H 1.09004 * 109.46869 * 59.99484 * 4 2 1 33 33 H 1.08999 * 109.47052 * 179.97438 * 4 2 1 34 34 H 0.97001 * 119.99504 * 239.99637 * 5 2 1 35 35 H 1.09000 * 109.47102 * 60.00527 * 8 6 5 36 36 H 1.08996 * 109.47128 * 299.99640 * 8 6 5 37 37 H 0.97007 * 119.99823 * 0.02562 * 9 8 6 38 38 H 0.96998 * 119.99605 * 359.97438 * 12 10 9 39 39 H 1.08999 * 109.46866 * 298.20738 * 13 12 10 40 40 H 1.08996 * 109.47239 * 58.20744 * 13 12 10 41 41 H 0.97003 * 120.00760 * 185.06267 * 18 17 15 42 42 H 1.08996 * 117.50090 * 0.02562 * 23 14 13 43 43 H 1.08999 * 117.49010 * 145.02348 * 23 14 13 44 44 H 1.08996 * 117.49775 * 214.98139 * 24 14 13 45 45 H 1.09005 * 117.49534 * 359.97353 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -1.9809 1.4094 7 8 0.9960 -2.5705 0.6108 8 6 2.1957 -2.6915 2.6396 9 7 1.7068 -4.0725 2.6399 10 6 2.0322 -4.9023 3.6507 11 8 2.7319 -4.5050 4.5622 12 7 1.5829 -6.1730 3.6508 13 6 1.9317 -7.0733 4.7528 14 6 1.2630 -8.4317 4.5326 15 6 1.7354 -9.2008 3.3259 16 1 1.1984 -9.1235 2.3921 17 6 2.8532 -10.0031 3.4140 18 7 3.5799 -10.0004 4.5101 19 14 3.3356 -11.0941 1.9764 20 1 3.5916 -10.2522 0.7802 21 1 4.5651 -11.8523 2.3210 22 1 2.2331 -12.0454 1.6853 23 6 -0.2103 -8.5654 4.9233 24 6 0.8714 -9.2358 5.7740 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6765 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 2.5761 -0.2192 1.8346 35 1 1.8326 -2.1778 3.5298 36 1 3.2856 -2.6916 2.6391 37 1 1.1488 -4.3897 1.9125 38 1 1.0249 -6.4902 2.9235 39 1 3.0134 -7.2022 4.7880 40 1 1.5858 -6.6463 5.6941 41 1 4.4059 -10.5078 4.5458 42 1 -0.7032 -7.6856 5.3368 43 1 -0.8376 -9.2100 4.3077 44 1 0.9553 -10.3211 5.7177 45 1 1.0907 -8.7971 6.7475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331783242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:47 Heat of formation + Delta-G solvation = -73.948866 kcal Electronic energy + Delta-G solvation = -24096.063342 eV Core-core repulsion = 20534.225939 eV Total energy + Delta-G solvation = -3561.837403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48190 -40.64626 -38.56187 -37.62803 -35.34432 -34.91418 -33.95310 -33.18279 -29.20263 -28.23135 -28.18804 -27.69214 -26.52514 -22.97654 -22.37897 -21.71307 -21.20996 -20.59971 -19.60619 -18.31536 -17.55321 -17.33916 -16.99159 -16.64621 -16.56372 -16.03507 -15.67417 -15.51420 -15.12123 -14.93500 -14.51471 -14.44848 -14.17022 -14.07799 -13.51805 -13.40434 -13.31163 -13.00423 -12.95000 -12.90915 -12.79028 -12.49575 -12.38084 -12.09933 -12.02495 -11.97852 -11.51836 -11.31706 -10.85139 -10.72969 -10.44677 -10.35832 -10.12180 -10.03255 -9.61060 -8.08578 -6.21509 1.43763 1.44749 1.51174 1.51399 1.58911 2.21249 2.29327 2.43506 3.19176 3.34045 3.58093 3.65883 3.94807 4.00209 4.14976 4.26622 4.38037 4.38867 4.58308 4.67809 4.71379 4.74019 4.76131 4.78118 4.88336 4.96649 5.00837 5.01758 5.04139 5.24302 5.29073 5.33973 5.40949 5.41371 5.59144 5.60793 5.63174 5.71592 5.79815 6.09955 6.38719 6.52705 6.84884 7.14980 7.20004 7.47524 7.64134 8.98743 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.002936 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.321882 B = 9534.395970 C =10119.391981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 C -0.149 4.149 4 C -0.164 4.164 5 N -0.707 5.707 6 C 0.517 3.483 7 O -0.560 6.560 8 C 0.119 3.881 9 N -0.731 5.731 10 C 0.701 3.299 11 O -0.639 6.639 12 N -0.716 5.716 13 C 0.200 3.800 14 C 0.005 3.995 15 C -0.507 4.507 16 H 0.061 0.939 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 0.949 3.051 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.270 1.270 23 C -0.178 4.178 24 C -0.156 4.156 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.417 0.583 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.410 0.590 38 H 0.405 0.595 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.259 0.741 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 22.897 -8.820 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.360 5.360 6 C 0.303 3.697 7 O -0.439 6.439 8 C -0.009 4.009 9 N -0.390 5.390 10 C 0.401 3.599 11 O -0.522 6.522 12 N -0.369 5.369 13 C 0.075 3.925 14 C 0.004 3.996 15 C -0.545 4.545 16 H 0.079 0.921 17 C -0.175 4.175 18 N -0.544 5.544 19 Si 0.775 3.225 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.195 1.195 23 C -0.215 4.215 24 C -0.195 4.195 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.254 0.746 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.248 0.752 38 H 0.240 0.760 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.024 22.720 -8.469 24.579 hybrid contribution 0.400 -1.110 -0.773 1.411 sum -3.623 21.610 -9.242 23.781 Atomic orbital electron populations 1.22203 0.94658 1.02483 1.02709 1.20506 0.94161 0.93179 0.84212 1.22054 1.02191 0.92203 1.04157 1.22214 1.01131 1.01382 0.97466 1.45989 1.53366 1.10783 1.25866 1.20468 0.79731 0.82802 0.86690 1.90652 1.39070 1.66801 1.47365 1.20975 1.01048 0.81747 0.97094 1.44634 1.57292 1.11437 1.25643 1.16003 0.80186 0.81320 0.82415 1.90840 1.44849 1.77260 1.39233 1.44936 1.55181 1.09340 1.27398 1.20431 0.97876 0.87907 0.86294 1.19051 0.92645 0.92325 0.95576 1.20631 1.12053 1.25791 0.96027 0.92095 1.25681 0.96618 0.97482 0.97706 1.70086 1.13833 1.42202 1.28242 0.85762 0.77412 0.79281 0.80026 1.19889 1.21552 1.19548 1.23005 0.92207 1.02190 1.04084 1.22438 1.04251 0.98060 0.94721 0.92128 0.90516 0.93170 0.91016 0.89754 0.90829 0.93229 0.90480 0.92356 0.74590 0.87587 0.88177 0.75217 0.76005 0.95306 0.94541 0.93168 0.89291 0.89708 0.91755 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.40 71.98 0.60 -1.86 16 2 C 0.16 2.15 1.06 3.61 0.00 2.16 16 3 C -0.15 -1.00 8.59 71.98 0.62 -0.38 16 4 C -0.16 -2.60 8.40 71.98 0.60 -2.00 16 5 N -0.71 -9.75 5.11 -422.91 -2.16 -11.91 16 6 C 0.52 10.82 7.32 87.66 0.64 11.47 16 7 O -0.56 -15.34 11.88 -3.04 -0.04 -15.37 16 8 C 0.12 2.72 6.15 85.63 0.53 3.25 16 9 N -0.73 -21.93 5.53 -482.29 -2.67 -24.60 16 10 C 0.70 27.30 8.57 179.06 1.53 28.84 16 11 O -0.64 -29.16 16.34 -3.98 -0.07 -29.22 16 12 N -0.72 -28.89 5.48 -478.53 -2.62 -31.51 16 13 C 0.20 9.38 5.50 86.38 0.48 9.85 16 14 C 0.00 0.23 1.38 -52.93 -0.07 0.16 16 15 C -0.51 -26.46 8.63 25.60 0.22 -26.24 16 16 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 17 C 0.03 1.40 5.39 84.66 0.46 1.86 16 18 N -0.91 -51.80 12.91 21.45 0.28 -51.53 16 19 Si 0.95 43.01 29.55 68.60 2.03 45.04 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 24 C -0.16 -7.19 9.42 30.62 0.29 -6.90 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.09 6.17 -2.39 -0.01 1.07 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 1.12 6.17 -2.39 -0.01 1.10 16 32 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.42 3.31 8.47 -92.71 -0.79 2.52 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.41 11.77 7.45 -92.70 -0.69 11.08 16 38 H 0.40 14.99 8.38 -92.71 -0.78 14.22 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 41 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -68.89 371.74 -0.29 -69.18 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -1.25 Total: 36.62 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.21 Total: 13.30 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -7.17 Total: -119.55 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -68.89 -0.29 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.770 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds