Wall clock time and date at job start Tue Mar 31 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.26235 * 2 1 4 4 C 1.50880 * 109.37016 * 119.68611 * 2 1 3 5 5 C 1.52568 * 109.36179 * 212.07991 * 4 2 1 6 6 C 1.47095 * 114.32405 * 274.98845 * 5 4 2 7 7 C 1.54863 * 110.32536 * 62.79556 * 6 5 4 8 8 N 1.44581 * 109.60209 * 288.73778 * 7 6 5 9 9 C 1.34770 * 118.63930 * 270.70319 * 8 7 6 10 10 O 1.21593 * 119.99857 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00425 * 359.97438 * 9 8 7 12 12 C 1.46504 * 120.00175 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47289 * 180.02562 * 12 11 9 14 14 O 1.21299 * 119.99503 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00127 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00204 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99958 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00290 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47221 * 89.99487 * 20 18 16 22 22 H 1.48498 * 109.46786 * 209.99865 * 20 18 16 23 23 H 1.48502 * 109.46639 * 329.99603 * 20 18 16 24 24 C 1.47598 * 122.71418 * 90.98419 * 8 7 6 25 25 H 1.08993 * 109.46764 * 300.31476 * 1 2 3 26 26 H 1.08993 * 109.46828 * 60.31567 * 1 2 3 27 27 H 1.09000 * 109.46835 * 180.31609 * 1 2 3 28 28 H 1.09002 * 109.47035 * 180.60349 * 3 2 1 29 29 H 1.09002 * 109.47316 * 300.60806 * 3 2 1 30 30 H 1.09004 * 109.46943 * 60.60443 * 3 2 1 31 31 H 1.09001 * 109.49402 * 92.10942 * 4 2 1 32 32 H 1.09000 * 109.48848 * 332.04425 * 4 2 1 33 33 H 1.08998 * 108.51588 * 153.73060 * 5 4 2 34 34 H 1.09000 * 108.50999 * 36.23404 * 5 4 2 35 35 H 1.09005 * 109.32489 * 302.53642 * 6 5 4 36 36 H 1.08997 * 109.19033 * 182.97623 * 6 5 4 37 37 H 1.09000 * 109.44762 * 168.69694 * 7 6 5 38 38 H 1.09005 * 109.42554 * 48.76242 * 7 6 5 39 39 H 0.97000 * 120.00297 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46827 * 60.00638 * 12 11 9 41 41 H 1.08991 * 109.47749 * 300.00562 * 12 11 9 42 42 H 0.97001 * 120.00241 * 359.97438 * 15 13 12 43 43 H 0.97002 * 120.00050 * 180.02562 * 19 18 16 44 44 H 1.08997 * 108.95062 * 78.29283 * 24 8 7 45 45 H 1.08998 * 108.94861 * 196.92499 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2366 5 6 3.3488 -0.0768 1.6783 6 6 4.5358 -0.6192 0.9997 7 6 4.4645 -0.3319 -0.5204 8 7 3.4427 -1.1585 -1.1229 9 6 3.7849 -2.3806 -1.5767 10 8 2.9453 -3.0961 -2.0882 11 7 5.0577 -2.8091 -1.4646 12 6 5.4295 -4.1377 -1.9574 13 6 6.8982 -4.3713 -1.7133 14 8 7.5683 -3.5125 -1.1797 15 7 7.4669 -5.5342 -2.0879 16 6 8.8031 -5.7465 -1.8664 17 1 9.4001 -4.9816 -1.3921 18 6 9.3897 -6.9453 -2.2531 19 7 8.6635 -7.8759 -2.8307 20 14 11.2102 -7.2348 -1.9506 21 1 11.3971 -7.8603 -0.6168 22 1 11.7491 -8.1365 -3.0002 23 1 11.9316 -5.9375 -1.9943 24 6 2.0417 -0.7170 -1.2669 25 1 -0.3632 0.5187 0.8871 26 1 -0.3633 0.5089 -0.8928 27 1 -0.3633 -1.0277 0.0057 28 1 3.1247 1.4483 -0.0108 29 1 1.6607 1.9600 -0.8845 30 1 1.6784 1.9537 0.8954 31 1 2.1868 -1.7607 1.0153 32 1 1.2948 -0.6054 2.0347 33 1 3.4631 -0.2305 2.7513 34 1 3.3017 0.9956 1.4889 35 1 4.5832 -1.6961 1.1615 36 1 5.4296 -0.1526 1.4136 37 1 5.4285 -0.5555 -0.9775 38 1 4.2221 0.7188 -0.6799 39 1 5.7276 -2.2382 -1.0569 40 1 5.2241 -4.1994 -3.0260 41 1 4.8491 -4.8958 -1.4316 42 1 6.9309 -6.2211 -2.5143 43 1 9.0729 -8.7129 -3.1003 44 1 1.9704 -0.0369 -2.1157 45 1 1.4143 -1.5873 -1.4591 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336388301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:37 Heat of formation + Delta-G solvation = -60.213123 kcal Electronic energy + Delta-G solvation = -25076.807005 eV Core-core repulsion = 21515.565228 eV Total energy + Delta-G solvation = -3561.241777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87223 -38.87817 -37.97111 -35.07820 -34.34657 -33.64335 -33.37560 -31.35305 -28.50912 -27.99924 -27.61145 -25.81844 -24.75886 -24.13034 -21.37355 -19.66954 -19.50720 -18.62192 -18.24018 -17.68837 -16.82453 -15.95458 -15.65643 -15.11256 -14.97842 -14.70731 -14.42318 -14.26834 -14.05902 -13.71129 -13.55530 -13.32624 -13.18033 -12.90622 -12.47063 -12.26820 -12.19310 -12.09281 -11.79866 -11.61693 -11.44231 -11.32045 -11.11403 -10.86818 -10.66905 -10.47740 -10.44983 -10.30588 -10.21881 -9.78169 -9.62015 -8.85155 -8.60065 -8.36680 -8.08163 -6.49852 -3.91803 2.79332 3.12603 3.22806 3.28173 3.41957 3.77360 4.04573 4.20154 4.45150 4.49996 4.64168 4.73656 4.81819 4.92069 5.05389 5.18972 5.22701 5.29124 5.34182 5.40083 5.47129 5.51345 5.62700 5.65016 5.71949 5.87040 5.89452 5.94072 5.94827 6.01271 6.04217 6.06499 6.11141 6.13395 6.20709 6.34554 6.66318 6.81390 7.09305 7.47405 7.94223 8.22937 8.47193 8.83773 9.06318 9.41586 9.89524 10.67124 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.003001 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.637604 B = 9326.462059 C = 9792.496647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.157 4.157 4 C -0.105 4.105 5 C -0.132 4.132 6 C -0.140 4.140 7 C 0.101 3.899 8 N -0.620 5.620 9 C 0.702 3.298 10 O -0.599 6.599 11 N -0.724 5.724 12 C 0.127 3.873 13 C 0.430 3.570 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.140 3.860 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.407 0.593 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.274 0.726 44 H 0.058 0.942 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 16.135 5.973 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.213 4.213 4 C -0.142 4.142 5 C -0.169 4.169 6 C -0.179 4.179 7 C -0.023 4.023 8 N -0.357 5.357 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.383 5.383 12 C -0.002 4.002 13 C 0.215 3.785 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C 0.018 3.982 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.247 0.753 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.593 15.978 5.866 21.783 hybrid contribution 0.941 -0.457 0.102 1.051 sum -12.652 15.521 5.968 20.895 Atomic orbital electron populations 1.21864 0.93739 1.02149 1.01839 1.20723 0.95797 0.95700 0.95508 1.22412 1.02173 0.95238 1.01514 1.21118 0.96527 1.00402 0.96187 1.20672 0.94498 1.01824 0.99898 1.21306 0.98537 1.02516 0.95565 1.21741 0.91422 0.96068 0.93061 1.46751 1.09596 1.15560 1.63780 1.15896 0.82813 0.81594 0.79386 1.90879 1.49774 1.56085 1.51073 1.44987 1.09055 1.18906 1.65392 1.20783 0.94922 0.84225 1.00255 1.19771 0.88417 0.84491 0.85802 1.90485 1.64043 1.44963 1.48991 1.41784 1.10252 1.14338 1.52054 1.19722 0.84348 1.01726 1.37588 0.87706 1.25321 1.00640 0.95301 0.96475 1.69616 1.36925 1.07007 1.39969 0.85819 0.81716 0.78502 0.78025 1.20289 1.20811 1.19330 1.21808 0.80929 0.99716 0.95782 0.92342 0.92503 0.92298 0.90722 0.92887 0.92455 0.91569 0.92023 0.92707 0.90610 0.91444 0.90722 0.90450 0.89519 0.75297 0.90092 0.90112 0.77023 0.91609 0.92376 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.15 37.16 0.30 -0.73 16 2 C -0.08 -0.66 0.75 -154.89 -0.12 -0.78 16 3 C -0.16 -1.13 6.75 37.16 0.25 -0.88 16 4 C -0.10 -1.00 4.90 -28.02 -0.14 -1.14 16 5 C -0.13 -1.17 4.99 -29.79 -0.15 -1.32 16 6 C -0.14 -1.45 5.74 -28.58 -0.16 -1.61 16 7 C 0.10 1.09 5.06 -4.08 -0.02 1.07 16 8 N -0.62 -8.10 2.23 -178.05 -0.40 -8.50 16 9 C 0.70 11.98 8.22 -86.93 -0.71 11.26 16 10 O -0.60 -12.04 15.62 5.28 0.08 -11.96 16 11 N -0.72 -12.75 5.36 -66.41 -0.36 -13.10 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 C 0.43 9.97 7.85 -10.99 -0.09 9.89 16 14 O -0.60 -15.34 15.24 5.54 0.08 -15.26 16 15 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 17 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -24.04 13.05 55.50 0.72 -23.32 16 20 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C 0.14 1.58 5.02 -2.76 -0.01 1.57 16 25 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.55 3.16 -51.93 -0.16 0.38 16 29 H 0.05 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 31 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 32 H 0.06 0.53 7.74 -51.93 -0.40 0.13 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.58 4.66 -51.93 -0.24 0.33 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.91 6.23 -51.93 -0.32 0.58 16 38 H 0.09 0.76 5.21 -51.93 -0.27 0.48 16 39 H 0.41 7.02 5.05 -40.82 -0.21 6.82 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.56 7.90 -40.82 -0.32 9.23 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 0.61 7.98 -51.93 -0.41 0.19 16 45 H 0.09 1.21 6.78 -51.93 -0.35 0.85 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -31.08 345.20 -7.67 -38.75 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.81 Total: 14.55 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.12 Total: 11.85 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.09 Total: -58.72 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: 0.17 Total: -27.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.08 -7.67 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336388301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.462 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds