Wall clock time and date at job start Tue Mar 31 2020 03:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.26235 * 2 1 4 4 C 1.50880 * 109.37016 * 119.68611 * 2 1 3 5 5 C 1.52568 * 109.36179 * 212.07991 * 4 2 1 6 6 C 1.47095 * 114.32405 * 274.98845 * 5 4 2 7 7 C 1.54863 * 110.32536 * 62.79556 * 6 5 4 8 8 N 1.44581 * 109.60209 * 288.73778 * 7 6 5 9 9 C 1.34770 * 118.63930 * 270.70319 * 8 7 6 10 10 O 1.21593 * 119.99857 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00425 * 359.97438 * 9 8 7 12 12 C 1.46504 * 120.00175 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47289 * 180.02562 * 12 11 9 14 14 O 1.21299 * 119.99503 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00127 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00204 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99958 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00290 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47221 * 89.99487 * 20 18 16 22 22 H 1.48498 * 109.46786 * 209.99865 * 20 18 16 23 23 H 1.48502 * 109.46639 * 329.99603 * 20 18 16 24 24 C 1.47598 * 122.71418 * 90.98419 * 8 7 6 25 25 H 1.08993 * 109.46764 * 300.31476 * 1 2 3 26 26 H 1.08993 * 109.46828 * 60.31567 * 1 2 3 27 27 H 1.09000 * 109.46835 * 180.31609 * 1 2 3 28 28 H 1.09002 * 109.47035 * 180.60349 * 3 2 1 29 29 H 1.09002 * 109.47316 * 300.60806 * 3 2 1 30 30 H 1.09004 * 109.46943 * 60.60443 * 3 2 1 31 31 H 1.09001 * 109.49402 * 92.10942 * 4 2 1 32 32 H 1.09000 * 109.48848 * 332.04425 * 4 2 1 33 33 H 1.08998 * 108.51588 * 153.73060 * 5 4 2 34 34 H 1.09000 * 108.50999 * 36.23404 * 5 4 2 35 35 H 1.09005 * 109.32489 * 302.53642 * 6 5 4 36 36 H 1.08997 * 109.19033 * 182.97623 * 6 5 4 37 37 H 1.09000 * 109.44762 * 168.69694 * 7 6 5 38 38 H 1.09005 * 109.42554 * 48.76242 * 7 6 5 39 39 H 0.97000 * 120.00297 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46827 * 60.00638 * 12 11 9 41 41 H 1.08991 * 109.47749 * 300.00562 * 12 11 9 42 42 H 0.97001 * 120.00241 * 359.97438 * 15 13 12 43 43 H 0.97002 * 120.00050 * 180.02562 * 19 18 16 44 44 H 1.08997 * 108.95062 * 78.29283 * 24 8 7 45 45 H 1.08998 * 108.94861 * 196.92499 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2366 5 6 3.3488 -0.0768 1.6783 6 6 4.5358 -0.6192 0.9997 7 6 4.4645 -0.3319 -0.5204 8 7 3.4427 -1.1585 -1.1229 9 6 3.7849 -2.3806 -1.5767 10 8 2.9453 -3.0961 -2.0882 11 7 5.0577 -2.8091 -1.4646 12 6 5.4295 -4.1377 -1.9574 13 6 6.8982 -4.3713 -1.7133 14 8 7.5683 -3.5125 -1.1797 15 7 7.4669 -5.5342 -2.0879 16 6 8.8031 -5.7465 -1.8664 17 1 9.4001 -4.9816 -1.3921 18 6 9.3897 -6.9453 -2.2531 19 7 8.6635 -7.8759 -2.8307 20 14 11.2102 -7.2348 -1.9506 21 1 11.3971 -7.8603 -0.6168 22 1 11.7491 -8.1365 -3.0002 23 1 11.9316 -5.9375 -1.9943 24 6 2.0417 -0.7170 -1.2669 25 1 -0.3632 0.5187 0.8871 26 1 -0.3633 0.5089 -0.8928 27 1 -0.3633 -1.0277 0.0057 28 1 3.1247 1.4483 -0.0108 29 1 1.6607 1.9600 -0.8845 30 1 1.6784 1.9537 0.8954 31 1 2.1868 -1.7607 1.0153 32 1 1.2948 -0.6054 2.0347 33 1 3.4631 -0.2305 2.7513 34 1 3.3017 0.9956 1.4889 35 1 4.5832 -1.6961 1.1615 36 1 5.4296 -0.1526 1.4136 37 1 5.4285 -0.5555 -0.9775 38 1 4.2221 0.7188 -0.6799 39 1 5.7276 -2.2382 -1.0569 40 1 5.2241 -4.1994 -3.0260 41 1 4.8491 -4.8958 -1.4316 42 1 6.9309 -6.2211 -2.5143 43 1 9.0729 -8.7129 -3.1003 44 1 1.9704 -0.0369 -2.1157 45 1 1.4143 -1.5873 -1.4591 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336388301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:36 Heat of formation + Delta-G solvation = -80.485886 kcal Electronic energy + Delta-G solvation = -25077.686098 eV Core-core repulsion = 21515.565228 eV Total energy + Delta-G solvation = -3562.120870 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96817 -40.37979 -39.46400 -36.34391 -35.99634 -35.10462 -34.40238 -33.36901 -29.52056 -29.28526 -28.25431 -27.12792 -26.07214 -25.39601 -22.34165 -21.39798 -20.85092 -20.09632 -19.43903 -19.05433 -17.87899 -17.41301 -17.09056 -16.56875 -16.37133 -16.21039 -15.87390 -15.48804 -15.26437 -15.06566 -14.71284 -14.31541 -14.15546 -13.92345 -13.76499 -13.54502 -13.51276 -13.19181 -12.95732 -12.91372 -12.78114 -12.45840 -12.23017 -12.12841 -12.08446 -11.64967 -11.57298 -11.46584 -11.33899 -11.14289 -10.79034 -10.56133 -10.29395 -10.09855 -9.49282 -8.51168 -6.01526 1.36241 1.42162 1.53144 1.59295 1.88660 2.08144 2.27952 2.85309 3.15912 3.16168 3.65195 3.78630 3.88099 3.97122 4.00555 4.18960 4.27348 4.39068 4.43244 4.48517 4.51371 4.57546 4.67880 4.77568 4.79364 4.86498 4.91043 5.06103 5.15987 5.20113 5.23386 5.26370 5.30970 5.35101 5.38549 5.43501 5.44390 5.61258 5.69590 5.87534 5.91964 6.47427 6.91007 7.02908 7.41094 7.50152 7.93481 8.65876 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.003001 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.637604 B = 9326.462059 C = 9792.496647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.154 4.154 4 C -0.104 4.104 5 C -0.131 4.131 6 C -0.136 4.136 7 C 0.096 3.904 8 N -0.610 5.610 9 C 0.698 3.302 10 O -0.633 6.633 11 N -0.725 5.725 12 C 0.140 3.860 13 C 0.435 3.565 14 O -0.622 6.622 15 N -0.559 5.559 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.136 3.864 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.036 0.964 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.409 0.591 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.398 0.602 43 H 0.280 0.720 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 17.980 6.591 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.210 4.210 4 C -0.141 4.141 5 C -0.168 4.168 6 C -0.175 4.175 7 C -0.027 4.027 8 N -0.345 5.345 9 C 0.399 3.601 10 O -0.515 6.515 11 N -0.384 5.384 12 C 0.011 3.989 13 C 0.221 3.779 14 O -0.510 6.510 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.193 1.193 24 C 0.014 3.986 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.250 0.750 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.805 17.857 6.497 23.487 hybrid contribution 0.933 -0.992 -0.077 1.364 sum -12.871 16.864 6.420 22.165 Atomic orbital electron populations 1.21856 0.92699 1.01781 1.03033 1.20695 0.96548 0.96409 0.93425 1.22374 1.02052 0.93760 1.02805 1.21113 0.97447 0.98493 0.97095 1.20679 0.93263 1.02936 0.99874 1.21278 1.00103 1.00733 0.95371 1.21964 0.90349 0.97210 0.93134 1.46841 1.10849 1.14228 1.62567 1.16067 0.82063 0.82606 0.79382 1.90849 1.50475 1.57457 1.52763 1.44917 1.09536 1.18327 1.65660 1.20582 0.91899 0.85460 1.00964 1.20353 0.89777 0.83482 0.84242 1.90459 1.65248 1.45599 1.49734 1.41827 1.09888 1.15006 1.52670 1.19746 0.85389 1.02207 1.39246 0.89491 1.26147 1.04828 0.94547 0.95642 1.69686 1.38597 1.07356 1.40048 0.84858 0.76397 0.78365 0.78308 1.19553 1.19650 1.19342 1.22008 0.79411 0.99192 0.97984 0.90815 0.91611 0.93526 0.90748 0.91959 0.90911 0.94952 0.90771 0.92304 0.88307 0.94544 0.89293 0.91453 0.86478 0.75046 0.89192 0.89419 0.76746 0.91061 0.91055 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.15 71.98 0.59 -1.19 16 2 C -0.07 -1.08 0.75 -52.43 -0.04 -1.12 16 3 C -0.15 -1.65 6.75 71.98 0.49 -1.17 16 4 C -0.10 -1.85 4.90 29.76 0.15 -1.70 16 5 C -0.13 -2.06 4.99 28.61 0.14 -1.92 16 6 C -0.14 -2.68 5.74 29.39 0.17 -2.51 16 7 C 0.10 1.96 5.06 87.37 0.44 2.41 16 8 N -0.61 -15.72 2.23 -835.49 -1.86 -17.58 16 9 C 0.70 24.18 8.22 179.06 1.47 25.66 16 10 O -0.63 -26.07 15.62 -4.01 -0.06 -26.14 16 11 N -0.73 -25.94 5.36 -482.30 -2.59 -28.52 16 12 C 0.14 5.44 6.15 85.63 0.53 5.97 16 13 C 0.43 20.57 7.85 87.66 0.69 21.26 16 14 O -0.62 -32.54 15.24 -3.09 -0.05 -32.58 16 15 N -0.56 -28.54 5.29 -306.98 -1.62 -30.16 16 16 C -0.34 -18.69 9.68 84.04 0.81 -17.88 16 17 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.92 -49.19 13.05 21.66 0.28 -48.90 16 20 Si 1.00 41.93 29.55 68.60 2.03 43.96 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 C 0.14 2.97 5.02 86.61 0.44 3.40 16 25 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.80 3.16 -2.39 -0.01 0.79 16 29 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.07 0.62 7.90 -2.38 -0.02 0.60 16 31 H 0.03 0.79 7.49 -2.39 -0.02 0.78 16 32 H 0.07 1.13 7.74 -2.39 -0.02 1.12 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.14 4.66 -2.39 -0.01 1.13 16 35 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.54 6.23 -2.39 -0.01 1.52 16 38 H 0.12 1.70 5.21 -2.38 -0.01 1.69 16 39 H 0.41 14.35 5.05 -92.71 -0.47 13.88 16 40 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 43 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 45 H 0.07 1.80 6.78 -2.39 -0.02 1.78 16 Total: -1.00 -67.56 345.20 2.28 -65.28 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.18 Total: 43.55 kcal Atomic # 6 Polarization: 24.77 SS G_CDS: 6.33 Total: 31.11 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -5.79 Total: -125.18 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -0.11 Total: -58.72 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -67.56 2.28 -65.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336388301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.204 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds