Wall clock time and date at job start Tue Mar 31 2020 03:49:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47382 * 2 1
4 4 H 1.09001 * 109.46707 * 54.99548 * 3 2 1
5 5 C 1.53001 * 109.47100 * 294.99889 * 3 2 1
6 6 C 1.52995 * 109.47011 * 179.97438 * 5 3 2
7 7 C 1.52997 * 109.47423 * 59.99879 * 6 5 3
8 8 C 1.53001 * 109.47126 * 300.00050 * 7 6 5
9 9 C 1.52995 * 109.47011 * 59.99697 * 8 7 6
10 10 H 1.08998 * 109.47006 * 179.97438 * 9 8 7
11 11 N 1.46501 * 109.47414 * 60.00404 * 9 8 7
12 12 C 1.34779 * 120.00059 * 84.99402 * 11 9 8
13 13 O 1.21585 * 119.99998 * 0.02562 * 12 11 9
14 14 N 1.34778 * 119.99865 * 180.02562 * 12 11 9
15 15 C 1.46498 * 120.00064 * 180.02562 * 14 12 11
16 16 C 1.50702 * 109.47272 * 180.02562 * 15 14 12
17 17 O 1.21295 * 119.99886 * 359.97438 * 16 15 14
18 18 N 1.34774 * 120.00110 * 179.97438 * 16 15 14
19 19 C 1.37092 * 120.00310 * 179.97438 * 18 16 15
20 20 H 1.08005 * 119.99734 * 359.72414 * 19 18 16
21 21 C 1.38955 * 120.00445 * 180.02562 * 19 18 16
22 22 N 1.31411 * 120.00276 * 179.72381 * 21 19 18
23 23 Si 1.86803 * 119.99625 * 359.72096 * 21 19 18
24 24 H 1.48500 * 109.46986 * 90.00449 * 23 21 19
25 25 H 1.48496 * 109.47029 * 210.00465 * 23 21 19
26 26 H 1.48499 * 109.47352 * 330.00295 * 23 21 19
27 27 H 1.08999 * 109.47353 * 300.00680 * 1 2 3
28 28 H 1.09004 * 109.46691 * 60.00462 * 1 2 3
29 29 H 1.09000 * 109.47229 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.47588 * 239.99818 * 2 1 3
31 31 H 1.09009 * 109.47099 * 119.99783 * 2 1 3
32 32 H 1.09001 * 109.46760 * 299.99898 * 5 3 2
33 33 H 1.08998 * 109.47040 * 59.99318 * 5 3 2
34 34 H 1.09006 * 109.46696 * 179.97438 * 6 5 3
35 35 H 1.09001 * 109.47353 * 299.99630 * 6 5 3
36 36 H 1.09001 * 109.47060 * 59.99571 * 7 6 5
37 37 H 1.08997 * 109.47217 * 179.97438 * 7 6 5
38 38 H 1.09001 * 109.46760 * 299.99705 * 8 7 6
39 39 H 1.09007 * 109.47088 * 180.02562 * 8 7 6
40 40 H 0.97004 * 120.00124 * 264.99827 * 11 9 8
41 41 H 0.97004 * 120.00319 * 0.02562 * 14 12 11
42 42 H 1.08998 * 109.47084 * 59.99574 * 15 14 12
43 43 H 1.09001 * 109.46927 * 299.99804 * 15 14 12
44 44 H 0.97004 * 120.00041 * 0.02562 * 18 16 15
45 45 H 0.97000 * 119.99719 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9815 0.8418
5 6 1.6353 2.1266 -1.3074
6 6 2.1448 3.5692 -1.3071
7 6 3.6696 3.5716 -1.1810
8 6 4.0743 2.8875 0.1264
9 6 3.5648 1.4449 0.1261
10 1 3.8535 0.9575 1.0573
11 7 4.1495 0.7207 -1.0052
12 6 5.3667 0.1543 -0.8863
13 8 5.9793 0.2441 0.1601
14 7 5.9048 -0.5115 -1.9272
15 6 7.2276 -1.1276 -1.7978
16 6 7.5958 -1.8039 -3.0933
17 8 6.8284 -1.7745 -4.0322
18 7 8.7776 -2.4413 -3.2086
19 6 9.1124 -3.0569 -4.3869
20 1 8.4270 -3.0350 -5.2213
21 6 10.3307 -3.7146 -4.5056
22 7 10.6492 -4.3093 -5.6333
23 14 11.5158 -3.7531 -3.0622
24 1 11.2358 -4.9462 -2.2236
25 1 12.9102 -3.8199 -3.5683
26 1 11.3434 -2.5237 -2.2472
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8934 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 2.0700 1.5875 -2.1491
33 1 0.5490 2.1252 -1.3970
34 1 1.8569 4.0563 -2.2387
35 1 1.7098 4.1080 -0.4653
36 1 4.1046 3.0327 -2.0227
37 1 4.0326 4.5993 -1.1812
38 1 3.6393 3.4264 0.9681
39 1 5.1606 2.8896 0.2164
40 1 3.6606 0.6488 -1.8400
41 1 5.4162 -0.5828 -2.7622
42 1 7.2080 -1.8650 -0.9953
43 1 7.9653 -0.3591 -1.5671
44 1 9.3912 -2.4651 -2.4576
45 1 11.4998 -4.7681 -5.7163
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344353548.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:29
Heat of formation + Delta-G solvation = -91.694999 kcal
Electronic energy + Delta-G solvation = -24477.538315 eV
Core-core repulsion = 20914.931382 eV
Total energy + Delta-G solvation = -3562.606933 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.53985 -38.97556 -38.07935 -34.48114 -34.19189 -33.71032 -33.61392 -31.78890
-30.17787 -29.11998 -27.38927 -24.33198 -24.10519 -22.64897 -21.28547 -20.79265
-19.68617 -19.24870 -18.74691 -18.14459 -16.15421 -15.87122 -15.65167 -15.40244
-15.06675 -14.85602 -14.64584 -14.41105 -14.11621 -13.83821 -13.66542 -13.45733
-13.12299 -12.87209 -12.48656 -12.40452 -12.39570 -12.14937 -12.03794 -11.75306
-11.68737 -11.30597 -11.22342 -10.97875 -10.75875 -10.63398 -10.44222 -10.14265
-10.06283 -10.01812 -9.68672 -9.10219 -8.75131 -8.62158 -8.29342 -6.40007
-3.92475 2.82965 3.00787 3.05372 3.13417 3.39116 3.59737 4.04458
4.30016 4.37010 4.43799 4.51877 4.65506 4.80390 4.91639 5.01492
5.10025 5.15253 5.19143 5.23750 5.35397 5.37591 5.47622 5.48365
5.64175 5.69983 5.76769 5.78839 5.81842 5.83640 5.88181 5.91161
6.00431 6.03052 6.07731 6.16618 6.20858 6.61953 6.69029 7.10881
7.46188 8.01521 8.23466 8.45695 8.79950 8.82896 9.31001 9.65017
10.72238
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.025950 B = 0.002859 C = 0.002807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1078.749338 B = 9791.325782 C = 9971.121083
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.120 4.120
3 C -0.094 4.094
4 H 0.083 0.917
5 C -0.117 4.117
6 C -0.119 4.119
7 C -0.119 4.119
8 C -0.132 4.132
9 C 0.171 3.829
10 H 0.087 0.913
11 N -0.738 5.738
12 C 0.705 3.295
13 O -0.599 6.599
14 N -0.726 5.726
15 C 0.127 3.873
16 C 0.439 3.561
17 O -0.579 6.579
18 N -0.577 5.577
19 C -0.310 4.310
20 H 0.121 0.879
21 C 0.045 3.955
22 N -0.875 5.875
23 Si 0.879 3.121
24 H -0.269 1.269
25 H -0.275 1.275
26 H -0.266 1.266
27 H 0.052 0.948
28 H 0.056 0.944
29 H 0.052 0.948
30 H 0.064 0.936
31 H 0.063 0.937
32 H 0.061 0.939
33 H 0.067 0.933
34 H 0.060 0.940
35 H 0.061 0.939
36 H 0.063 0.937
37 H 0.059 0.941
38 H 0.067 0.933
39 H 0.069 0.931
40 H 0.394 0.606
41 H 0.407 0.593
42 H 0.082 0.918
43 H 0.082 0.918
44 H 0.374 0.626
45 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.286 13.343 12.530 25.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.158 4.158
3 C -0.113 4.113
4 H 0.102 0.898
5 C -0.155 4.155
6 C -0.157 4.157
7 C -0.156 4.156
8 C -0.170 4.170
9 C 0.066 3.934
10 H 0.105 0.895
11 N -0.395 5.395
12 C 0.405 3.595
13 O -0.479 6.479
14 N -0.384 5.384
15 C -0.002 4.002
16 C 0.225 3.775
17 O -0.464 6.464
18 N -0.215 5.215
19 C -0.438 4.438
20 H 0.139 0.861
21 C -0.159 4.159
22 N -0.514 5.514
23 Si 0.705 3.295
24 H -0.194 1.194
25 H -0.200 1.200
26 H -0.192 1.192
27 H 0.071 0.929
28 H 0.075 0.925
29 H 0.072 0.928
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.080 0.920
33 H 0.086 0.914
34 H 0.079 0.921
35 H 0.079 0.921
36 H 0.082 0.918
37 H 0.078 0.922
38 H 0.086 0.914
39 H 0.088 0.912
40 H 0.229 0.771
41 H 0.244 0.756
42 H 0.100 0.900
43 H 0.100 0.900
44 H 0.208 0.792
45 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -17.047 13.285 12.714 25.075
hybrid contribution 0.731 -0.231 0.192 0.790
sum -16.316 13.054 12.906 24.560
Atomic orbital electron populations
1.21820 0.95879 1.01608 1.01707 1.21557 0.95673 0.95897 1.02630
1.21487 0.94170 0.96635 0.98969 0.89849 1.21647 1.00876 0.95749
0.97197 1.21548 0.95952 0.96519 1.01653 1.21497 0.95531 1.00339
0.98282 1.21948 1.01881 0.95450 0.97769 1.20759 0.91327 0.91583
0.89749 0.89499 1.45167 1.18485 1.58839 1.17011 1.15868 0.81337
0.78465 0.83818 1.90889 1.62348 1.66358 1.28259 1.44762 1.20168
1.57656 1.15825 1.20778 0.84449 0.97764 0.97188 1.19682 0.83747
0.84683 0.89398 1.90533 1.50951 1.64325 1.40574 1.42113 1.16278
1.48579 1.14489 1.19438 1.03732 1.29365 0.91294 0.86116 1.25064
0.97231 0.96513 0.97101 1.69619 1.23484 1.33762 1.24566 0.86672
0.81529 0.79011 0.82303 1.19395 1.20007 1.19177 0.92894 0.92526
0.92841 0.91686 0.91818 0.92001 0.91440 0.92084 0.92055 0.91781
0.92242 0.91391 0.91179 0.77053 0.75603 0.89970 0.89994 0.79241
0.91403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16
2 C -0.12 -0.94 5.17 -26.73 -0.14 -1.08 16
3 C -0.09 -0.70 1.98 -90.62 -0.18 -0.88 16
4 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
5 C -0.12 -0.80 4.79 -26.73 -0.13 -0.93 16
6 C -0.12 -0.83 5.92 -26.74 -0.16 -0.99 16
7 C -0.12 -1.02 5.77 -26.73 -0.15 -1.17 16
8 C -0.13 -1.26 5.60 -26.73 -0.15 -1.41 16
9 C 0.17 1.70 2.23 -67.93 -0.15 1.55 16
10 H 0.09 1.03 7.57 -51.93 -0.39 0.63 16
11 N -0.74 -8.38 3.62 -58.68 -0.21 -8.60 16
12 C 0.71 10.88 8.53 -86.91 -0.74 10.14 16
13 O -0.60 -11.14 16.00 5.29 0.08 -11.06 16
14 N -0.73 -11.70 5.53 -66.41 -0.37 -12.07 16
15 C 0.13 2.24 6.15 -5.19 -0.03 2.20 16
16 C 0.44 9.69 7.85 -10.99 -0.09 9.61 16
17 O -0.58 -14.64 15.24 5.54 0.08 -14.55 16
18 N -0.58 -13.48 5.09 -10.96 -0.06 -13.54 16
19 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16
20 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16
21 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16
22 N -0.88 -25.07 13.96 55.50 0.77 -24.30 16
23 Si 0.88 19.09 27.73 -169.99 -4.71 14.38 16
24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16
26 H -0.27 -5.31 6.53 56.52 0.37 -4.94 16
27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
28 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16
29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.06 0.56 7.61 -51.93 -0.40 0.17 16
31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16
32 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16
33 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16
34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
36 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16
37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
40 H 0.39 3.85 6.68 -40.82 -0.27 3.57 16
41 H 0.41 6.43 7.45 -40.82 -0.30 6.13 16
42 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16
43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
44 H 0.37 7.74 5.77 -40.82 -0.24 7.51 16
45 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16
LS Contribution 354.83 15.07 5.35 5.35
Total: -1.00 -32.02 354.83 -8.09 -40.10
By element:
Atomic # 1 Polarization: 22.72 SS G_CDS: -7.22 Total: 15.50 kcal
Atomic # 6 Polarization: 10.59 SS G_CDS: -1.81 Total: 8.78 kcal
Atomic # 7 Polarization: -58.64 SS G_CDS: 0.14 Total: -58.50 kcal
Atomic # 8 Polarization: -25.78 SS G_CDS: 0.17 Total: -25.61 kcal
Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -32.02 -8.09 -40.10 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344353548.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.593 kcal
(2) G-P(sol) polarization free energy of solvation -32.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds