Wall clock time and date at job start Tue Mar 31 2020 03:49:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47382 * 2 1
4 4 H 1.09001 * 109.46707 * 54.99548 * 3 2 1
5 5 C 1.53001 * 109.47100 * 294.99889 * 3 2 1
6 6 C 1.52995 * 109.47011 * 179.97438 * 5 3 2
7 7 C 1.52997 * 109.47423 * 59.99879 * 6 5 3
8 8 C 1.53001 * 109.47126 * 300.00050 * 7 6 5
9 9 C 1.52995 * 109.47011 * 59.99697 * 8 7 6
10 10 H 1.08998 * 109.47006 * 179.97438 * 9 8 7
11 11 N 1.46501 * 109.47414 * 60.00404 * 9 8 7
12 12 C 1.34779 * 120.00059 * 84.99402 * 11 9 8
13 13 O 1.21585 * 119.99998 * 0.02562 * 12 11 9
14 14 N 1.34778 * 119.99865 * 180.02562 * 12 11 9
15 15 C 1.46498 * 120.00064 * 180.02562 * 14 12 11
16 16 C 1.50702 * 109.47272 * 180.02562 * 15 14 12
17 17 O 1.21295 * 119.99886 * 359.97438 * 16 15 14
18 18 N 1.34774 * 120.00110 * 179.97438 * 16 15 14
19 19 C 1.37092 * 120.00310 * 179.97438 * 18 16 15
20 20 H 1.08005 * 119.99734 * 359.72414 * 19 18 16
21 21 C 1.38955 * 120.00445 * 180.02562 * 19 18 16
22 22 N 1.31411 * 120.00276 * 179.72381 * 21 19 18
23 23 Si 1.86803 * 119.99625 * 359.72096 * 21 19 18
24 24 H 1.48500 * 109.46986 * 90.00449 * 23 21 19
25 25 H 1.48496 * 109.47029 * 210.00465 * 23 21 19
26 26 H 1.48499 * 109.47352 * 330.00295 * 23 21 19
27 27 H 1.08999 * 109.47353 * 300.00680 * 1 2 3
28 28 H 1.09004 * 109.46691 * 60.00462 * 1 2 3
29 29 H 1.09000 * 109.47229 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.47588 * 239.99818 * 2 1 3
31 31 H 1.09009 * 109.47099 * 119.99783 * 2 1 3
32 32 H 1.09001 * 109.46760 * 299.99898 * 5 3 2
33 33 H 1.08998 * 109.47040 * 59.99318 * 5 3 2
34 34 H 1.09006 * 109.46696 * 179.97438 * 6 5 3
35 35 H 1.09001 * 109.47353 * 299.99630 * 6 5 3
36 36 H 1.09001 * 109.47060 * 59.99571 * 7 6 5
37 37 H 1.08997 * 109.47217 * 179.97438 * 7 6 5
38 38 H 1.09001 * 109.46760 * 299.99705 * 8 7 6
39 39 H 1.09007 * 109.47088 * 180.02562 * 8 7 6
40 40 H 0.97004 * 120.00124 * 264.99827 * 11 9 8
41 41 H 0.97004 * 120.00319 * 0.02562 * 14 12 11
42 42 H 1.08998 * 109.47084 * 59.99574 * 15 14 12
43 43 H 1.09001 * 109.46927 * 299.99804 * 15 14 12
44 44 H 0.97004 * 120.00041 * 0.02562 * 18 16 15
45 45 H 0.97000 * 119.99719 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9815 0.8418
5 6 1.6353 2.1266 -1.3074
6 6 2.1448 3.5692 -1.3071
7 6 3.6696 3.5716 -1.1810
8 6 4.0743 2.8875 0.1264
9 6 3.5648 1.4449 0.1261
10 1 3.8535 0.9575 1.0573
11 7 4.1495 0.7207 -1.0052
12 6 5.3667 0.1543 -0.8863
13 8 5.9793 0.2441 0.1601
14 7 5.9048 -0.5115 -1.9272
15 6 7.2276 -1.1276 -1.7978
16 6 7.5958 -1.8039 -3.0933
17 8 6.8284 -1.7745 -4.0322
18 7 8.7776 -2.4413 -3.2086
19 6 9.1124 -3.0569 -4.3869
20 1 8.4270 -3.0350 -5.2213
21 6 10.3307 -3.7146 -4.5056
22 7 10.6492 -4.3093 -5.6333
23 14 11.5158 -3.7531 -3.0622
24 1 11.2358 -4.9462 -2.2236
25 1 12.9102 -3.8199 -3.5683
26 1 11.3434 -2.5237 -2.2472
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8934 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 2.0700 1.5875 -2.1491
33 1 0.5490 2.1252 -1.3970
34 1 1.8569 4.0563 -2.2387
35 1 1.7098 4.1080 -0.4653
36 1 4.1046 3.0327 -2.0227
37 1 4.0326 4.5993 -1.1812
38 1 3.6393 3.4264 0.9681
39 1 5.1606 2.8896 0.2164
40 1 3.6606 0.6488 -1.8400
41 1 5.4162 -0.5828 -2.7622
42 1 7.2080 -1.8650 -0.9953
43 1 7.9653 -0.3591 -1.5671
44 1 9.3912 -2.4651 -2.4576
45 1 11.4998 -4.7681 -5.7163
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344353548.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:29
Heat of formation + Delta-G solvation = -114.330296 kcal
Electronic energy + Delta-G solvation = -24478.519855 eV
Core-core repulsion = 20914.931382 eV
Total energy + Delta-G solvation = -3563.588473 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.58305 -40.46335 -39.39572 -36.27791 -35.26658 -34.85032 -34.60268 -33.82659
-31.01327 -29.89190 -28.83129 -26.17050 -24.73435 -23.40106 -22.35826 -21.51096
-21.46483 -20.66270 -19.97636 -19.58107 -17.46956 -17.33653 -16.92906 -16.69383
-16.30566 -15.96384 -15.84927 -15.48085 -15.35567 -14.93516 -14.85461 -14.45561
-14.31071 -14.12667 -13.97838 -13.70640 -13.47704 -13.09847 -13.03270 -12.95032
-12.44979 -12.38540 -12.29927 -12.00404 -11.94487 -11.61144 -11.58119 -11.40472
-11.34070 -11.11704 -10.81952 -10.65075 -10.35367 -10.29065 -9.73535 -8.45841
-6.07698 1.31267 1.33984 1.43694 1.64960 1.78970 2.17178 2.20386
2.80491 3.10602 3.34009 3.66099 3.79242 3.86432 4.00095 4.17169
4.24013 4.37480 4.40331 4.44844 4.49526 4.54606 4.58830 4.69203
4.76066 4.81325 4.88842 5.02571 5.12297 5.19139 5.21768 5.29747
5.31271 5.34198 5.36883 5.42809 5.49085 5.52371 5.57935 5.70117
5.88124 5.99745 6.48873 6.77998 7.05494 7.28707 7.58084 7.78208
8.70672
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.025950 B = 0.002859 C = 0.002807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1078.749338 B = 9791.325782 C = 9971.121083
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.120 4.120
3 C -0.083 4.083
4 H 0.099 0.901
5 C -0.116 4.116
6 C -0.114 4.114
7 C -0.117 4.117
8 C -0.128 4.128
9 C 0.169 3.831
10 H 0.068 0.932
11 N -0.722 5.722
12 C 0.705 3.295
13 O -0.630 6.630
14 N -0.729 5.729
15 C 0.139 3.861
16 C 0.446 3.554
17 O -0.614 6.614
18 N -0.578 5.578
19 C -0.331 4.331
20 H 0.063 0.937
21 C -0.008 4.008
22 N -0.926 5.926
23 Si 0.958 3.042
24 H -0.256 1.256
25 H -0.273 1.273
26 H -0.233 1.233
27 H 0.061 0.939
28 H 0.064 0.936
29 H 0.049 0.951
30 H 0.054 0.946
31 H 0.052 0.948
32 H 0.056 0.944
33 H 0.082 0.918
34 H 0.067 0.933
35 H 0.073 0.927
36 H 0.048 0.952
37 H 0.063 0.937
38 H 0.086 0.914
39 H 0.041 0.959
40 H 0.404 0.596
41 H 0.408 0.592
42 H 0.101 0.899
43 H 0.099 0.901
44 H 0.392 0.608
45 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.996 14.686 14.925 27.610
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.157 4.157
3 C -0.102 4.102
4 H 0.117 0.883
5 C -0.153 4.153
6 C -0.152 4.152
7 C -0.155 4.155
8 C -0.166 4.166
9 C 0.064 3.936
10 H 0.086 0.914
11 N -0.378 5.378
12 C 0.405 3.595
13 O -0.511 6.511
14 N -0.387 5.387
15 C 0.011 3.989
16 C 0.234 3.766
17 O -0.500 6.500
18 N -0.218 5.218
19 C -0.460 4.460
20 H 0.082 0.918
21 C -0.208 4.208
22 N -0.566 5.566
23 Si 0.778 3.222
24 H -0.181 1.181
25 H -0.198 1.198
26 H -0.156 1.156
27 H 0.080 0.920
28 H 0.083 0.917
29 H 0.069 0.931
30 H 0.072 0.928
31 H 0.071 0.929
32 H 0.074 0.926
33 H 0.101 0.899
34 H 0.086 0.914
35 H 0.092 0.908
36 H 0.067 0.933
37 H 0.081 0.919
38 H 0.104 0.896
39 H 0.060 0.940
40 H 0.241 0.759
41 H 0.245 0.755
42 H 0.118 0.882
43 H 0.117 0.883
44 H 0.228 0.772
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -17.808 14.655 15.112 27.573
hybrid contribution 0.828 -0.615 -0.620 1.203
sum -16.981 14.040 14.492 26.372
Atomic orbital electron populations
1.21792 0.94633 1.01735 1.02510 1.21537 0.96739 0.95875 1.01574
1.21431 0.91914 0.96722 1.00118 0.88279 1.21653 1.01783 0.95509
0.96357 1.21521 0.94373 0.96709 1.02562 1.21479 0.96956 1.00124
0.96917 1.21901 1.00112 0.95441 0.99195 1.20907 0.93092 0.91363
0.88264 0.91385 1.45119 1.17099 1.57705 1.17917 1.15950 0.82111
0.78383 0.83029 1.90867 1.63441 1.67555 1.29285 1.44732 1.19810
1.57982 1.16159 1.20659 0.85604 0.98295 0.94363 1.20508 0.82619
0.83110 0.90398 1.90521 1.51905 1.65090 1.42475 1.41916 1.17228
1.48909 1.13740 1.19032 1.03739 1.31576 0.91673 0.91844 1.26059
0.98900 0.95118 1.00676 1.69779 1.24532 1.34788 1.27508 0.85450
0.77837 0.80788 0.78087 1.18054 1.19812 1.15644 0.92019 0.91743
0.93139 0.92770 0.92917 0.92558 0.89925 0.91421 0.90823 0.93313
0.91865 0.89573 0.94047 0.75935 0.75471 0.88161 0.88322 0.77240
0.90912
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.67 9.67 71.98 0.70 -0.97 16
2 C -0.12 -1.70 5.17 30.59 0.16 -1.54 16
3 C -0.08 -1.07 1.98 -10.79 -0.02 -1.09 16
4 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16
5 C -0.12 -1.28 4.79 30.59 0.15 -1.14 16
6 C -0.11 -1.28 5.92 30.59 0.18 -1.10 16
7 C -0.12 -1.83 5.77 30.59 0.18 -1.65 16
8 C -0.13 -2.31 5.60 30.59 0.17 -2.13 16
9 C 0.17 3.18 2.23 44.99 0.10 3.28 16
10 H 0.07 1.58 7.57 -2.39 -0.02 1.56 16
11 N -0.72 -15.90 3.62 -457.82 -1.66 -17.55 16
12 C 0.71 21.26 8.53 179.05 1.53 22.79 16
13 O -0.63 -22.95 16.00 -3.98 -0.06 -23.01 16
14 N -0.73 -22.92 5.53 -482.30 -2.67 -25.59 16
15 C 0.14 4.70 6.15 85.63 0.53 5.23 16
16 C 0.45 19.64 7.85 87.66 0.69 20.33 16
17 O -0.61 -31.76 15.24 -3.08 -0.05 -31.81 16
18 N -0.58 -26.79 5.09 -306.98 -1.56 -28.36 16
19 C -0.33 -18.89 10.16 84.04 0.85 -18.04 16
20 H 0.06 4.27 7.39 -2.91 -0.02 4.24 16
21 C -0.01 -0.41 5.50 84.93 0.47 0.05 16
22 N -0.93 -54.62 13.96 21.66 0.30 -54.32 16
23 Si 0.96 38.35 27.73 68.60 1.90 40.25 16
24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16
25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16
26 H -0.23 -8.00 6.53 99.48 0.65 -7.35 16
27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
28 H 0.06 0.62 6.57 -2.38 -0.02 0.61 16
29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
30 H 0.05 0.88 7.61 -2.39 -0.02 0.86 16
31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16
32 H 0.06 0.70 6.51 -2.39 -0.02 0.68 16
33 H 0.08 0.73 6.56 -2.39 -0.02 0.71 16
34 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16
35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
36 H 0.05 0.90 7.60 -2.39 -0.02 0.89 16
37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
39 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16
40 H 0.40 7.53 6.68 -92.71 -0.62 6.91 16
41 H 0.41 12.79 7.45 -92.71 -0.69 12.10 16
42 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16
43 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16
44 H 0.39 15.30 5.77 -92.71 -0.53 14.77 16
45 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16
Total: -1.00 -72.57 354.83 0.99 -71.58
By element:
Atomic # 1 Polarization: 45.69 SS G_CDS: -0.89 Total: 44.80 kcal
Atomic # 6 Polarization: 18.34 SS G_CDS: 5.67 Total: 24.01 kcal
Atomic # 7 Polarization: -120.23 SS G_CDS: -5.59 Total: -125.82 kcal
Atomic # 8 Polarization: -54.71 SS G_CDS: -0.11 Total: -54.82 kcal
Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.25 kcal
Total: -72.57 0.99 -71.58 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344353548.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.753 kcal
(2) G-P(sol) polarization free energy of solvation -72.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds