Wall clock time and date at job start Tue Mar 31 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46769 * 2 1 4 4 H 1.08994 * 109.46974 * 304.99320 * 3 2 1 5 5 C 1.52994 * 109.47337 * 64.99945 * 3 2 1 6 6 C 1.52999 * 109.47024 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47278 * 299.99839 * 6 5 3 8 8 C 1.53003 * 109.47127 * 60.00039 * 7 6 5 9 9 C 1.52999 * 109.47010 * 300.00125 * 8 7 6 10 10 H 1.08995 * 109.47098 * 299.99700 * 9 8 7 11 11 N 1.46498 * 109.47257 * 179.97438 * 9 8 7 12 12 C 1.34777 * 119.99828 * 84.72116 * 11 9 8 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 9 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47138 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99626 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00072 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00087 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00187 * 179.97438 * 19 18 16 22 22 N 1.31420 * 119.99963 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 90.00215 * 23 21 19 25 25 H 1.48503 * 109.47230 * 209.99835 * 23 21 19 26 26 H 1.48496 * 109.47428 * 330.00370 * 23 21 19 27 27 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47355 * 299.99965 * 1 2 3 29 29 H 1.09005 * 109.47378 * 60.00326 * 1 2 3 30 30 H 1.09001 * 109.47355 * 240.00034 * 2 1 3 31 31 H 1.08997 * 109.46801 * 119.99500 * 2 1 3 32 32 H 1.08996 * 109.47083 * 299.99873 * 5 3 2 33 33 H 1.09003 * 109.47213 * 60.00194 * 5 3 2 34 34 H 1.08995 * 109.47098 * 60.00107 * 6 5 3 35 35 H 1.09003 * 109.47054 * 179.97438 * 6 5 3 36 36 H 1.08996 * 109.47253 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47446 * 299.99911 * 7 6 5 38 38 H 1.08996 * 109.47248 * 179.97438 * 8 7 6 39 39 H 1.08995 * 109.46945 * 59.99919 * 8 7 6 40 40 H 0.97001 * 120.00384 * 265.00562 * 11 9 8 41 41 H 0.97000 * 119.99549 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.47602 * 299.99940 * 15 14 12 43 43 H 1.09006 * 109.46868 * 59.99976 * 15 14 12 44 44 H 0.97002 * 120.00040 * 0.02562 * 18 16 15 45 45 H 0.96997 * 119.99818 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 2.1456 3.5689 1.3075 7 6 3.6704 3.5703 1.1821 8 6 4.0753 2.8862 -0.1252 9 6 3.5648 1.4438 -0.1254 10 1 3.9991 0.9046 0.7164 11 7 3.9519 0.7890 -1.3774 12 6 5.1710 0.2266 -1.4948 13 8 5.9478 0.2583 -0.5598 14 7 5.5293 -0.3710 -2.6485 15 6 6.8543 -0.9828 -2.7759 16 6 7.0026 -1.5779 -4.1525 17 8 6.0912 -1.4984 -4.9489 18 7 8.1482 -2.1976 -4.4989 19 6 8.2829 -2.7395 -5.7510 20 1 7.4711 -2.6695 -6.4599 21 6 9.4641 -3.3779 -6.1084 22 7 10.4520 -3.4628 -5.2459 23 14 9.6478 -4.1157 -7.8147 24 1 10.2109 -3.0967 -8.7365 25 1 10.5608 -5.2852 -7.7526 26 1 8.3180 -4.5515 -8.3114 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5137 0.8900 32 1 0.5489 2.1253 1.3968 33 1 2.0698 1.5876 2.1491 34 1 1.7113 4.1081 0.4657 35 1 1.8568 4.0564 2.2387 36 1 4.0341 4.5977 1.1827 37 1 4.1048 3.0310 2.0240 38 1 5.1616 2.8875 -0.2148 39 1 3.6410 3.4254 -0.9671 40 1 3.3323 0.7637 -2.1233 41 1 4.9095 -0.3966 -3.3942 42 1 7.6214 -0.2235 -2.6235 43 1 6.9658 -1.7673 -2.0273 44 1 8.8771 -2.2609 -3.8621 45 1 11.2765 -3.9088 -5.4953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344353550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:31 Heat of formation + Delta-G solvation = -101.818852 kcal Electronic energy + Delta-G solvation = -24123.978567 eV Core-core repulsion = 20560.932631 eV Total energy + Delta-G solvation = -3563.045936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30152 -38.87188 -37.98171 -34.41603 -34.26434 -33.95677 -33.58917 -31.36300 -29.87292 -29.03908 -27.13844 -24.47236 -24.14571 -22.49894 -20.91778 -20.53845 -20.14004 -19.55295 -18.29729 -17.89597 -16.59004 -15.61061 -15.40413 -15.13166 -15.07081 -14.69519 -14.36362 -14.27522 -14.23404 -13.86213 -13.62757 -13.54206 -13.40125 -12.90756 -12.76117 -12.15394 -12.03274 -11.80328 -11.70608 -11.61855 -11.50335 -11.29618 -11.11517 -11.00205 -10.72428 -10.53716 -10.45178 -10.30892 -10.27259 -9.91499 -9.62230 -9.04572 -8.60573 -8.54624 -8.08424 -6.50057 -3.92063 2.87183 3.12541 3.22803 3.28317 3.45791 3.77238 4.10051 4.33654 4.40077 4.49072 4.65203 4.81249 4.92525 4.95427 5.03532 5.11808 5.18734 5.21882 5.25596 5.30339 5.37956 5.48926 5.51520 5.75266 5.77224 5.79598 5.87758 5.89811 5.95387 5.98017 6.01636 6.03778 6.09741 6.10676 6.17922 6.26844 6.64653 6.80306 7.17272 7.47275 7.94020 8.30111 8.46963 8.86353 9.06153 9.41314 9.89277 10.66936 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.002551 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.498027 B =10971.756730 C =11501.511059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.171 3.829 10 H 0.087 0.913 11 N -0.744 5.744 12 C 0.705 3.295 13 O -0.598 6.598 14 N -0.726 5.726 15 C 0.129 3.871 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.395 0.605 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.537 11.176 12.667 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.113 4.113 4 H 0.093 0.907 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.066 3.934 10 H 0.105 0.895 11 N -0.399 5.399 12 C 0.404 3.596 13 O -0.477 6.477 14 N -0.383 5.383 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.185 5.185 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.243 0.757 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.189 11.122 12.956 23.529 hybrid contribution 0.160 -0.461 -1.201 1.296 sum -16.029 10.661 11.755 22.556 Atomic orbital electron populations 1.21820 0.95883 1.01594 1.01697 1.21576 0.95674 0.95938 1.02703 1.21461 0.94261 0.96612 0.98919 0.90727 1.21589 1.00825 0.95583 0.96934 1.21574 0.95928 0.96669 1.01698 1.21493 0.95617 1.00523 0.97836 1.21964 1.01895 0.95476 0.97695 1.20780 0.93458 0.92579 0.86583 0.89498 1.45146 1.15856 1.61714 1.17176 1.15875 0.82126 0.78417 0.83134 1.90897 1.51981 1.65609 1.39222 1.44786 1.18136 1.60320 1.15052 1.20766 0.84255 0.98055 0.96875 1.19783 0.84701 0.85151 0.88875 1.90488 1.40869 1.64283 1.52842 1.41791 1.13636 1.48196 1.14849 1.19720 1.01193 1.32143 0.90325 0.87715 1.25324 0.95098 0.97442 0.99896 1.69619 1.05345 1.43160 1.35410 0.85815 0.78442 0.78429 0.81348 1.20281 1.20804 1.19339 0.92844 0.92622 0.92818 0.91525 0.91864 0.91371 0.91671 0.92007 0.92010 0.91912 0.91744 0.91153 0.92008 0.77176 0.75692 0.90091 0.90097 0.77015 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -1.01 5.32 -26.73 -0.14 -1.15 16 3 C -0.09 -0.75 1.77 -90.62 -0.16 -0.91 16 4 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.11 -0.78 4.96 -26.73 -0.13 -0.91 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.13 -1.35 5.49 -26.73 -0.15 -1.50 16 9 C 0.17 1.82 1.90 -67.93 -0.13 1.69 16 10 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 11 N -0.74 -8.96 4.31 -58.68 -0.25 -9.21 16 12 C 0.70 11.50 8.53 -86.92 -0.74 10.76 16 13 O -0.60 -11.74 16.01 5.28 0.08 -11.65 16 14 N -0.73 -12.34 5.53 -66.41 -0.37 -12.71 16 15 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 16 C 0.43 9.94 7.85 -10.98 -0.09 9.85 16 17 O -0.60 -15.37 15.24 5.55 0.08 -15.29 16 18 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 19 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 20 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 23 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.35 6.57 -51.93 -0.34 0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.39 3.93 8.41 -40.82 -0.34 3.59 16 41 H 0.41 6.71 7.45 -40.82 -0.30 6.40 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -31.15 362.04 -8.55 -39.70 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -7.43 Total: 15.71 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.77 Total: 9.53 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.05 Total: -59.07 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.17 Total: -26.94 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.15 -8.55 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344353550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.120 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds