Wall clock time and date at job start Tue Mar 31 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46769 * 2 1 4 4 H 1.08994 * 109.46974 * 304.99320 * 3 2 1 5 5 C 1.52994 * 109.47337 * 64.99945 * 3 2 1 6 6 C 1.52999 * 109.47024 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47278 * 299.99839 * 6 5 3 8 8 C 1.53003 * 109.47127 * 60.00039 * 7 6 5 9 9 C 1.52999 * 109.47010 * 300.00125 * 8 7 6 10 10 H 1.08995 * 109.47098 * 299.99700 * 9 8 7 11 11 N 1.46498 * 109.47257 * 179.97438 * 9 8 7 12 12 C 1.34777 * 119.99828 * 84.72116 * 11 9 8 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 9 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 9 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47138 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99626 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00072 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00087 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00187 * 179.97438 * 19 18 16 22 22 N 1.31420 * 119.99963 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47136 * 90.00215 * 23 21 19 25 25 H 1.48503 * 109.47230 * 209.99835 * 23 21 19 26 26 H 1.48496 * 109.47428 * 330.00370 * 23 21 19 27 27 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47355 * 299.99965 * 1 2 3 29 29 H 1.09005 * 109.47378 * 60.00326 * 1 2 3 30 30 H 1.09001 * 109.47355 * 240.00034 * 2 1 3 31 31 H 1.08997 * 109.46801 * 119.99500 * 2 1 3 32 32 H 1.08996 * 109.47083 * 299.99873 * 5 3 2 33 33 H 1.09003 * 109.47213 * 60.00194 * 5 3 2 34 34 H 1.08995 * 109.47098 * 60.00107 * 6 5 3 35 35 H 1.09003 * 109.47054 * 179.97438 * 6 5 3 36 36 H 1.08996 * 109.47253 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47446 * 299.99911 * 7 6 5 38 38 H 1.08996 * 109.47248 * 179.97438 * 8 7 6 39 39 H 1.08995 * 109.46945 * 59.99919 * 8 7 6 40 40 H 0.97001 * 120.00384 * 265.00562 * 11 9 8 41 41 H 0.97000 * 119.99549 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.47602 * 299.99940 * 15 14 12 43 43 H 1.09006 * 109.46868 * 59.99976 * 15 14 12 44 44 H 0.97002 * 120.00040 * 0.02562 * 18 16 15 45 45 H 0.96997 * 119.99818 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 2.1456 3.5689 1.3075 7 6 3.6704 3.5703 1.1821 8 6 4.0753 2.8862 -0.1252 9 6 3.5648 1.4438 -0.1254 10 1 3.9991 0.9046 0.7164 11 7 3.9519 0.7890 -1.3774 12 6 5.1710 0.2266 -1.4948 13 8 5.9478 0.2583 -0.5598 14 7 5.5293 -0.3710 -2.6485 15 6 6.8543 -0.9828 -2.7759 16 6 7.0026 -1.5779 -4.1525 17 8 6.0912 -1.4984 -4.9489 18 7 8.1482 -2.1976 -4.4989 19 6 8.2829 -2.7395 -5.7510 20 1 7.4711 -2.6695 -6.4599 21 6 9.4641 -3.3779 -6.1084 22 7 10.4520 -3.4628 -5.2459 23 14 9.6478 -4.1157 -7.8147 24 1 10.2109 -3.0967 -8.7365 25 1 10.5608 -5.2852 -7.7526 26 1 8.3180 -4.5515 -8.3114 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5137 0.8900 32 1 0.5489 2.1253 1.3968 33 1 2.0698 1.5876 2.1491 34 1 1.7113 4.1081 0.4657 35 1 1.8568 4.0564 2.2387 36 1 4.0341 4.5977 1.1827 37 1 4.1048 3.0310 2.0240 38 1 5.1616 2.8875 -0.2148 39 1 3.6410 3.4254 -0.9671 40 1 3.3323 0.7637 -2.1233 41 1 4.9095 -0.3966 -3.3942 42 1 7.6214 -0.2235 -2.6235 43 1 6.9658 -1.7673 -2.0273 44 1 8.8771 -2.2609 -3.8621 45 1 11.2765 -3.9088 -5.4953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344353550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:31 Heat of formation + Delta-G solvation = -123.044849 kcal Electronic energy + Delta-G solvation = -24124.898995 eV Core-core repulsion = 20560.932631 eV Total energy + Delta-G solvation = -3563.966365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45995 -40.30004 -39.40039 -36.24229 -35.26693 -35.13558 -34.79140 -33.36996 -30.76218 -29.85709 -28.62330 -26.33475 -24.79784 -23.40878 -21.79024 -21.55008 -21.36113 -20.95480 -20.09851 -19.38862 -17.71222 -17.40164 -16.82977 -16.52022 -16.24473 -15.85170 -15.75947 -15.62946 -15.21877 -15.10862 -14.76751 -14.65047 -14.13581 -13.94334 -13.74353 -13.63534 -13.53982 -13.37369 -12.90958 -12.55463 -12.45821 -12.33237 -12.22228 -12.12663 -11.98751 -11.65770 -11.57070 -11.49316 -11.34028 -11.16535 -10.93897 -10.55709 -10.34070 -10.10100 -9.75784 -8.51083 -6.01420 1.36414 1.42372 1.54408 1.64050 1.89735 2.14532 2.28743 3.04763 3.16149 3.33401 3.61749 3.78070 3.94558 4.16071 4.21004 4.26299 4.36670 4.41674 4.45601 4.47115 4.51835 4.56014 4.59424 4.74204 4.85612 4.90868 5.04774 5.12382 5.19983 5.20176 5.28481 5.31845 5.33506 5.35350 5.38574 5.39139 5.51436 5.57418 5.66901 5.91802 5.99808 6.47973 7.03298 7.06028 7.42998 7.56791 7.94224 8.65974 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.002551 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.498027 B =10971.756730 C =11501.511059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.083 4.083 4 H 0.088 0.912 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.170 3.830 10 H 0.062 0.938 11 N -0.727 5.727 12 C 0.704 3.296 13 O -0.632 6.632 14 N -0.725 5.725 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.623 6.623 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.408 0.592 41 H 0.409 0.591 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.399 0.601 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.025 11.916 12.694 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.102 4.102 4 H 0.106 0.894 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.167 4.167 9 C 0.065 3.935 10 H 0.080 0.920 11 N -0.382 5.382 12 C 0.404 3.596 13 O -0.514 6.514 14 N -0.383 5.383 15 C 0.014 3.986 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.243 0.757 41 H 0.247 0.753 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.233 0.767 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.714 11.884 12.997 24.978 hybrid contribution 0.593 -0.658 -1.154 1.455 sum -17.121 11.225 11.843 23.652 Atomic orbital electron populations 1.21790 0.94462 1.01792 1.02556 1.21559 0.96883 0.95836 1.01610 1.21416 0.91764 0.96809 1.00260 0.89382 1.21600 1.01847 0.95450 0.95822 1.21554 0.94313 0.96699 1.02815 1.21489 0.97105 1.00482 0.96209 1.21913 0.99912 0.95448 0.99390 1.20921 0.95437 0.92273 0.84863 0.91956 1.45081 1.14470 1.60412 1.18187 1.15982 0.82957 0.78356 0.82292 1.90875 1.53360 1.66931 1.40228 1.44700 1.17502 1.60557 1.15521 1.20560 0.85633 0.98391 0.94057 1.20402 0.83622 0.83826 0.90001 1.90464 1.41567 1.64922 1.54199 1.41840 1.14345 1.48834 1.14500 1.19737 1.01512 1.34119 0.91213 0.89543 1.26144 0.94336 0.97183 1.03543 1.69687 1.05715 1.43346 1.36962 0.84860 0.78367 0.77922 0.76788 1.19532 1.19648 1.19403 0.93063 0.91525 0.92139 0.92752 0.92920 0.89606 0.92261 0.91130 0.90648 0.91160 0.92593 0.94261 0.90975 0.75653 0.75295 0.89243 0.89238 0.76720 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 71.98 0.70 -1.07 16 2 C -0.12 -1.86 5.32 30.59 0.16 -1.70 16 3 C -0.08 -1.19 1.77 -10.79 -0.02 -1.21 16 4 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.11 -1.27 4.96 30.59 0.15 -1.11 16 6 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 7 C -0.11 -1.77 5.92 30.59 0.18 -1.59 16 8 C -0.13 -2.56 5.49 30.60 0.17 -2.39 16 9 C 0.17 3.54 1.90 44.99 0.09 3.62 16 10 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 11 N -0.73 -17.17 4.31 -457.81 -1.97 -19.15 16 12 C 0.70 23.00 8.53 179.05 1.53 24.53 16 13 O -0.63 -25.16 16.01 -4.01 -0.06 -25.23 16 14 N -0.73 -24.55 5.53 -482.28 -2.67 -27.22 16 15 C 0.14 5.38 6.15 85.63 0.53 5.91 16 16 C 0.43 20.31 7.85 87.66 0.69 21.00 16 17 O -0.62 -32.37 15.24 -3.07 -0.05 -32.42 16 18 N -0.56 -28.43 5.29 -306.99 -1.62 -30.05 16 19 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 20 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 21 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 22 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 23 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.65 6.57 -2.39 -0.02 0.63 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.05 0.96 7.30 -2.39 -0.02 0.94 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.75 6.56 -2.39 -0.02 0.73 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.41 7.66 8.41 -92.71 -0.78 6.88 16 41 H 0.41 13.41 7.45 -92.71 -0.69 12.71 16 42 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 44 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.92 362.04 0.37 -66.55 By element: Atomic # 1 Polarization: 46.68 SS G_CDS: -1.19 Total: 45.49 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 5.63 Total: 26.91 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.98 Total: -125.25 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -0.11 Total: -57.64 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -66.92 0.37 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344353550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.494 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds