Wall clock time and date at job start Tue Mar 31 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46974 * 181.11660 * 3 2 1 5 5 C 1.53004 * 112.84897 * 294.90157 * 4 3 2 6 6 N 1.46498 * 109.47050 * 301.51997 * 5 4 3 7 7 C 1.34775 * 119.99760 * 175.14998 * 6 5 4 8 8 O 1.21592 * 119.99984 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00151 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00251 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47398 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99592 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.37101 * 119.99937 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00133 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99876 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00216 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99858 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47309 * 89.99461 * 18 16 14 20 20 H 1.48499 * 109.46929 * 209.99488 * 18 16 14 21 21 H 1.48498 * 109.46913 * 329.99330 * 18 16 14 22 22 C 1.53786 * 113.61475 * 163.70790 * 4 3 2 23 23 C 1.53949 * 87.01810 * 220.04832 * 22 4 3 24 24 C 1.53778 * 113.61548 * 66.09844 * 4 3 2 25 25 H 1.08999 * 109.47119 * 59.99860 * 1 2 3 26 26 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46901 * 299.99563 * 1 2 3 28 28 H 1.08994 * 109.46970 * 239.99675 * 2 1 3 29 29 H 1.08998 * 109.46702 * 119.99804 * 2 1 3 30 30 H 1.08991 * 109.47260 * 301.11955 * 3 2 1 31 31 H 1.09006 * 109.46879 * 61.12240 * 3 2 1 32 32 H 1.08997 * 109.47036 * 61.52711 * 5 4 3 33 33 H 1.09002 * 109.46938 * 181.52191 * 5 4 3 34 34 H 0.96995 * 120.00475 * 355.15680 * 6 5 4 35 35 H 0.96995 * 120.00084 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47180 * 300.00151 * 10 9 7 37 37 H 1.09000 * 109.46938 * 60.00000 * 10 9 7 38 38 H 0.97003 * 120.00319 * 0.02562 * 13 11 10 39 39 H 0.96997 * 120.00177 * 179.97438 * 17 16 14 40 40 H 1.09003 * 113.60800 * 334.56476 * 22 4 3 41 41 H 1.08994 * 113.61677 * 105.46666 * 22 4 3 42 42 H 1.09001 * 113.53655 * 270.80917 * 23 22 4 43 43 H 1.09003 * 113.74363 * 139.93912 * 23 22 4 44 44 H 1.09001 * 113.61475 * 254.52911 * 24 4 3 45 45 H 1.09007 * 113.61058 * 25.34672 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4426 -0.0281 5 6 4.1872 0.8406 1.2358 6 7 3.7328 1.5935 2.4075 7 6 4.0718 1.1825 3.6455 8 8 4.7552 0.1872 3.7898 9 7 3.6534 1.8748 4.7235 10 6 4.0214 1.4278 6.0692 11 6 3.4326 2.3679 7.0894 12 8 2.7704 3.3175 6.7279 13 7 3.6412 2.1528 8.4034 14 6 3.1051 3.0077 9.3315 15 1 2.5161 3.8538 9.0096 16 6 3.3206 2.7863 10.6862 17 7 4.0377 1.7571 11.0779 18 14 2.5896 3.9507 11.9508 19 1 1.2389 3.4730 12.3412 20 1 3.4653 3.9929 13.1493 21 1 2.4836 5.3121 11.3671 22 6 4.1785 2.7976 -0.4259 23 6 5.2099 2.0025 -1.2468 24 6 4.1620 0.8801 -1.3311 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6604 1.9620 -0.8797 31 1 1.6931 1.9504 0.8999 32 1 3.8786 -0.2004 1.3306 33 1 5.2740 0.8928 1.1695 34 1 3.1879 2.3876 2.2924 35 1 3.1079 2.6686 4.6084 36 1 3.6357 0.4221 6.2362 37 1 5.1071 1.4213 6.1657 38 1 4.1705 1.3931 8.6926 39 1 4.1884 1.6027 12.0236 40 1 3.5155 3.4120 -1.0351 41 1 4.6128 3.3438 0.4114 42 1 6.0992 1.7277 -0.6796 43 1 5.4452 2.4533 -2.2109 44 1 4.5831 -0.1195 -1.2235 45 1 3.4939 0.9680 -2.1879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345254771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:08 Heat of formation + Delta-G solvation = -70.191924 kcal Electronic energy + Delta-G solvation = -23932.329769 eV Core-core repulsion = 20370.655279 eV Total energy + Delta-G solvation = -3561.674490 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53038 -39.34490 -38.10723 -34.64679 -34.40322 -34.01926 -33.59592 -31.35983 -29.15520 -27.72541 -26.19086 -25.87929 -24.29853 -23.11472 -21.31663 -20.57342 -19.56116 -18.92986 -18.21300 -17.76803 -16.31967 -15.93563 -15.68526 -15.33562 -15.19645 -14.94483 -14.64587 -14.31320 -14.09521 -13.84915 -13.65615 -13.51199 -13.08316 -12.93440 -12.63982 -12.29284 -12.15578 -12.06568 -11.83130 -11.62493 -11.61290 -11.26070 -11.11548 -10.95209 -10.66556 -10.45151 -10.37649 -10.30891 -10.19963 -9.98897 -9.62210 -9.08960 -8.60638 -8.54346 -8.08437 -6.50002 -3.92033 2.85638 3.12590 3.22858 3.28348 3.45298 3.77213 4.08853 4.18382 4.28684 4.30892 4.54582 4.58725 4.72489 4.87364 4.92782 4.99405 5.09862 5.18746 5.34540 5.39278 5.42420 5.47860 5.55756 5.61777 5.64974 5.66664 5.74244 5.79256 5.88500 5.95154 5.96738 6.03560 6.10523 6.12007 6.14022 6.19389 6.56557 6.79383 7.14981 7.47285 7.94014 8.28441 8.46947 8.84544 9.06151 9.41308 9.89249 10.66977 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.002533 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.668688 B =11050.257934 C =11368.292143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.096 4.096 5 C 0.166 3.834 6 N -0.745 5.745 7 C 0.704 3.296 8 O -0.599 6.599 9 N -0.725 5.725 10 C 0.129 3.871 11 C 0.429 3.571 12 O -0.598 6.598 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.124 4.124 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -1.940 -23.538 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.096 4.096 5 C 0.041 3.959 6 N -0.402 5.402 7 C 0.404 3.596 8 O -0.478 6.478 9 N -0.382 5.382 10 C 0.000 4.000 11 C 0.215 3.785 12 O -0.485 6.485 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.171 4.171 23 C -0.181 4.181 24 C -0.162 4.162 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.075 -2.296 -23.397 23.534 hybrid contribution -0.511 0.777 0.834 1.249 sum -1.586 -1.519 -22.563 22.670 Atomic orbital electron populations 1.21772 0.95998 1.01556 1.01673 1.21513 0.95651 0.96787 1.02222 1.21545 0.93197 0.97225 1.02033 1.22111 0.95407 0.97438 0.94690 1.20862 0.98209 0.95278 0.81539 1.44974 1.58594 1.32294 1.04293 1.15848 0.80363 0.83016 0.80385 1.90903 1.43760 1.27569 1.85617 1.44764 1.57282 1.31910 1.04283 1.20770 1.00442 0.97932 0.80819 1.19777 0.86663 0.88278 0.83790 1.90488 1.45020 1.33132 1.79835 1.41791 1.46070 1.26688 1.03917 1.19724 1.29979 1.07940 0.85745 0.87710 1.25322 0.96898 0.97379 0.98144 1.69616 1.38460 1.28075 1.17376 0.85816 0.78614 0.80224 0.79394 1.20282 1.20807 1.19338 1.23040 0.98278 0.95668 1.00133 1.22872 0.97357 0.97455 1.00374 1.22891 0.98045 0.98735 0.96499 0.93013 0.92887 0.92666 0.92054 0.91696 0.91770 0.91749 0.91149 0.91842 0.77015 0.75674 0.90064 0.90067 0.77010 0.91603 0.89944 0.91125 0.90029 0.91522 0.91201 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -0.99 5.59 -26.73 -0.15 -1.14 16 3 C -0.10 -0.77 4.50 -26.73 -0.12 -0.89 16 4 C -0.10 -0.74 0.51 -153.69 -0.08 -0.82 16 5 C 0.17 1.75 4.65 -4.04 -0.02 1.73 16 6 N -0.75 -9.01 5.24 -65.22 -0.34 -9.35 16 7 C 0.70 11.59 8.57 -86.92 -0.74 10.85 16 8 O -0.60 -11.92 16.34 5.28 0.09 -11.84 16 9 N -0.72 -12.37 5.53 -66.41 -0.37 -12.74 16 10 C 0.13 2.44 6.15 -5.20 -0.03 2.41 16 11 C 0.43 9.93 7.85 -10.99 -0.09 9.85 16 12 O -0.60 -15.36 15.24 5.55 0.08 -15.27 16 13 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 15 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 18 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.13 -0.97 7.23 -25.83 -0.19 -1.16 16 23 C -0.14 -0.99 7.74 -25.83 -0.20 -1.19 16 24 C -0.12 -0.83 6.53 -25.92 -0.17 -1.00 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 7.61 -51.93 -0.40 0.05 16 29 H 0.06 0.62 6.95 -51.93 -0.36 0.26 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.06 0.53 7.04 -51.93 -0.37 0.16 16 32 H 0.07 0.82 7.00 -51.93 -0.36 0.46 16 33 H 0.06 0.72 7.30 -51.93 -0.38 0.34 16 34 H 0.40 4.02 7.56 -40.82 -0.31 3.71 16 35 H 0.41 6.72 7.45 -40.82 -0.30 6.42 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.08 0.53 8.05 -51.93 -0.42 0.12 16 41 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.08 0.61 7.60 -51.93 -0.39 0.21 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 45 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -31.25 367.11 -8.36 -39.61 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -7.34 Total: 15.64 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -1.66 Total: 9.93 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.04 Total: -59.20 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.17 Total: -27.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.25 -8.36 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345254771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.580 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds