Wall clock time and date at job start Tue Mar 31 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46974 * 181.11660 * 3 2 1 5 5 C 1.53004 * 112.84897 * 294.90157 * 4 3 2 6 6 N 1.46498 * 109.47050 * 301.51997 * 5 4 3 7 7 C 1.34775 * 119.99760 * 175.14998 * 6 5 4 8 8 O 1.21592 * 119.99984 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00151 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00251 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47398 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99592 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.37101 * 119.99937 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00133 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99876 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00216 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99858 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47309 * 89.99461 * 18 16 14 20 20 H 1.48499 * 109.46929 * 209.99488 * 18 16 14 21 21 H 1.48498 * 109.46913 * 329.99330 * 18 16 14 22 22 C 1.53786 * 113.61475 * 163.70790 * 4 3 2 23 23 C 1.53949 * 87.01810 * 220.04832 * 22 4 3 24 24 C 1.53778 * 113.61548 * 66.09844 * 4 3 2 25 25 H 1.08999 * 109.47119 * 59.99860 * 1 2 3 26 26 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46901 * 299.99563 * 1 2 3 28 28 H 1.08994 * 109.46970 * 239.99675 * 2 1 3 29 29 H 1.08998 * 109.46702 * 119.99804 * 2 1 3 30 30 H 1.08991 * 109.47260 * 301.11955 * 3 2 1 31 31 H 1.09006 * 109.46879 * 61.12240 * 3 2 1 32 32 H 1.08997 * 109.47036 * 61.52711 * 5 4 3 33 33 H 1.09002 * 109.46938 * 181.52191 * 5 4 3 34 34 H 0.96995 * 120.00475 * 355.15680 * 6 5 4 35 35 H 0.96995 * 120.00084 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47180 * 300.00151 * 10 9 7 37 37 H 1.09000 * 109.46938 * 60.00000 * 10 9 7 38 38 H 0.97003 * 120.00319 * 0.02562 * 13 11 10 39 39 H 0.96997 * 120.00177 * 179.97438 * 17 16 14 40 40 H 1.09003 * 113.60800 * 334.56476 * 22 4 3 41 41 H 1.08994 * 113.61677 * 105.46666 * 22 4 3 42 42 H 1.09001 * 113.53655 * 270.80917 * 23 22 4 43 43 H 1.09003 * 113.74363 * 139.93912 * 23 22 4 44 44 H 1.09001 * 113.61475 * 254.52911 * 24 4 3 45 45 H 1.09007 * 113.61058 * 25.34672 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4426 -0.0281 5 6 4.1872 0.8406 1.2358 6 7 3.7328 1.5935 2.4075 7 6 4.0718 1.1825 3.6455 8 8 4.7552 0.1872 3.7898 9 7 3.6534 1.8748 4.7235 10 6 4.0214 1.4278 6.0692 11 6 3.4326 2.3679 7.0894 12 8 2.7704 3.3175 6.7279 13 7 3.6412 2.1528 8.4034 14 6 3.1051 3.0077 9.3315 15 1 2.5161 3.8538 9.0096 16 6 3.3206 2.7863 10.6862 17 7 4.0377 1.7571 11.0779 18 14 2.5896 3.9507 11.9508 19 1 1.2389 3.4730 12.3412 20 1 3.4653 3.9929 13.1493 21 1 2.4836 5.3121 11.3671 22 6 4.1785 2.7976 -0.4259 23 6 5.2099 2.0025 -1.2468 24 6 4.1620 0.8801 -1.3311 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6604 1.9620 -0.8797 31 1 1.6931 1.9504 0.8999 32 1 3.8786 -0.2004 1.3306 33 1 5.2740 0.8928 1.1695 34 1 3.1879 2.3876 2.2924 35 1 3.1079 2.6686 4.6084 36 1 3.6357 0.4221 6.2362 37 1 5.1071 1.4213 6.1657 38 1 4.1705 1.3931 8.6926 39 1 4.1884 1.6027 12.0236 40 1 3.5155 3.4120 -1.0351 41 1 4.6128 3.3438 0.4114 42 1 6.0992 1.7277 -0.6796 43 1 5.4452 2.4533 -2.2109 44 1 4.5831 -0.1195 -1.2235 45 1 3.4939 0.9680 -2.1879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345254771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:08 Heat of formation + Delta-G solvation = -91.541036 kcal Electronic energy + Delta-G solvation = -23933.255536 eV Core-core repulsion = 20370.655279 eV Total energy + Delta-G solvation = -3562.600257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49518 -40.57361 -39.81605 -36.25121 -35.43831 -35.25367 -34.96165 -33.36537 -30.12811 -28.96541 -27.24067 -26.62040 -25.99746 -23.76401 -22.15371 -21.67016 -21.36466 -20.13278 -19.91513 -18.94290 -17.43779 -17.35910 -17.04290 -16.51310 -16.42578 -16.18849 -15.89983 -15.59357 -15.56783 -15.13774 -14.96728 -14.44311 -14.01008 -13.94848 -13.75086 -13.54057 -13.45365 -13.19244 -12.92753 -12.86738 -12.68997 -12.45414 -12.24383 -12.12462 -11.85581 -11.59688 -11.56685 -11.43119 -11.29967 -10.95258 -10.82681 -10.55325 -10.39945 -10.09901 -9.77886 -8.50711 -6.00988 1.36729 1.42640 1.54422 1.62906 1.90117 2.12855 2.28997 3.04485 3.16557 3.31163 3.60183 3.64793 3.72867 4.00867 4.05770 4.21464 4.24906 4.36317 4.43233 4.46165 4.49457 4.60027 4.70964 4.81462 4.89507 4.93560 5.00080 5.02342 5.04782 5.14649 5.18619 5.27978 5.31506 5.33625 5.39017 5.47956 5.49860 5.56435 5.59136 5.91771 5.96777 6.48402 7.03402 7.03728 7.43123 7.54215 7.94711 8.66330 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.002533 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.668688 B =11050.257934 C =11368.292143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.099 4.099 4 C -0.092 4.092 5 C 0.165 3.835 6 N -0.726 5.726 7 C 0.704 3.296 8 O -0.634 6.634 9 N -0.724 5.724 10 C 0.142 3.858 11 C 0.434 3.566 12 O -0.623 6.623 13 N -0.560 5.560 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.131 4.131 23 C -0.144 4.144 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -1.407 -24.774 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.137 4.137 4 C -0.093 4.093 5 C 0.041 3.959 6 N -0.382 5.382 7 C 0.403 3.597 8 O -0.516 6.516 9 N -0.382 5.382 10 C 0.013 3.987 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.195 5.195 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.820 3.180 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.168 4.168 23 C -0.181 4.181 24 C -0.155 4.155 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.244 0.756 35 H 0.247 0.753 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.528 -1.758 -24.673 24.783 hybrid contribution -0.364 0.587 1.136 1.329 sum -1.892 -1.171 -23.538 23.643 Atomic orbital electron populations 1.21770 0.95769 1.01628 1.01793 1.21491 0.95837 0.97035 1.01662 1.21534 0.92796 0.96916 1.02418 1.22024 0.95478 0.98040 0.93713 1.20958 0.98006 0.94833 0.82088 1.44882 1.57672 1.32404 1.03287 1.15953 0.80036 0.82498 0.81165 1.90880 1.45385 1.29087 1.86223 1.44677 1.57550 1.32141 1.03832 1.20572 1.00600 0.96984 0.80520 1.20400 0.85477 0.88111 0.83870 1.90465 1.45959 1.34416 1.80313 1.41838 1.46524 1.26735 1.04409 1.19739 1.31373 1.08513 0.86964 0.89544 1.26139 0.96845 0.98774 0.99421 1.69683 1.38838 1.29046 1.18130 0.84863 0.78141 0.77997 0.76959 1.19543 1.19663 1.19402 1.23059 0.98488 0.95270 1.00019 1.22869 0.97000 0.97488 1.00746 1.22904 0.97995 0.98537 0.96081 0.91782 0.92905 0.93613 0.91082 0.93788 0.90130 0.92534 0.92298 0.92569 0.75631 0.75282 0.89160 0.89141 0.76707 0.91067 0.88485 0.92196 0.90982 0.90360 0.91428 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.12 -1.81 5.59 30.59 0.17 -1.64 16 3 C -0.10 -1.31 4.50 30.59 0.14 -1.17 16 4 C -0.09 -1.28 0.51 -51.65 -0.03 -1.30 16 5 C 0.17 3.41 4.65 86.38 0.40 3.81 16 6 N -0.73 -17.16 5.24 -478.53 -2.51 -19.66 16 7 C 0.70 22.94 8.57 179.05 1.53 24.47 16 8 O -0.63 -25.20 16.34 -4.00 -0.07 -25.26 16 9 N -0.72 -24.44 5.53 -482.30 -2.67 -27.11 16 10 C 0.14 5.34 6.15 85.63 0.53 5.86 16 11 C 0.43 20.23 7.85 87.66 0.69 20.92 16 12 O -0.62 -32.28 15.24 -3.07 -0.05 -32.33 16 13 N -0.56 -28.33 5.29 -306.99 -1.62 -29.95 16 14 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 15 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 16 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 17 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 18 Si 1.00 41.85 29.55 68.60 2.03 43.87 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.13 -1.64 7.23 31.18 0.23 -1.42 16 23 C -0.14 -1.71 7.74 31.18 0.24 -1.47 16 24 C -0.12 -1.33 6.53 31.12 0.20 -1.12 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.91 7.61 -2.39 -0.02 0.89 16 29 H 0.04 0.83 6.95 -2.39 -0.02 0.81 16 30 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.06 0.84 7.04 -2.38 -0.02 0.82 16 32 H 0.06 1.38 7.00 -2.39 -0.02 1.36 16 33 H 0.06 1.26 7.30 -2.39 -0.02 1.25 16 34 H 0.41 7.87 7.56 -92.71 -0.70 7.17 16 35 H 0.41 13.39 7.45 -92.71 -0.69 12.70 16 36 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 39 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 41 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.07 1.00 7.60 -2.39 -0.02 0.98 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.81 8.10 -2.39 -0.02 0.80 16 45 H 0.10 0.87 8.10 -2.38 -0.02 0.85 16 Total: -1.00 -66.35 367.11 0.39 -65.97 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -1.11 Total: 45.63 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 6.10 Total: 27.56 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -6.51 Total: -125.45 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -0.11 Total: -57.59 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -66.35 0.39 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345254771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds