Wall clock time and date at job start Tue Mar 31 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.54764 * 2 1 4 4 C 1.52993 * 117.49959 * 145.67308 * 2 1 3 5 5 C 1.53002 * 117.49764 * 214.98314 * 4 2 1 6 6 N 1.46498 * 109.47325 * 71.55836 * 5 4 2 7 7 C 1.34784 * 119.99976 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34766 * 120.00094 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00124 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99761 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99996 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99855 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00219 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99813 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00201 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47598 * 59.99501 * 18 16 14 20 20 H 1.48510 * 109.47030 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47385 * 299.99317 * 18 16 14 22 22 C 1.52997 * 60.03377 * 107.47695 * 4 2 1 23 23 C 1.52997 * 117.49881 * 107.50173 * 22 4 2 24 24 C 1.52996 * 117.50025 * 252.52011 * 22 4 2 25 25 H 1.08998 * 109.47136 * 325.71891 * 1 2 3 26 26 H 1.09001 * 109.46719 * 85.72122 * 1 2 3 27 27 H 1.09001 * 109.46908 * 205.71653 * 1 2 3 28 28 H 1.08995 * 109.47107 * 154.27678 * 3 2 1 29 29 H 1.08994 * 109.47112 * 274.27972 * 3 2 1 30 30 H 1.08998 * 109.46889 * 34.27699 * 3 2 1 31 31 H 1.09005 * 117.49999 * 359.97161 * 4 2 1 32 32 H 1.09003 * 109.47011 * 311.55483 * 5 4 2 33 33 H 1.09002 * 109.47415 * 191.56312 * 5 4 2 34 34 H 0.96997 * 120.00203 * 359.97438 * 6 5 4 35 35 H 0.97004 * 120.00006 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.46999 * 299.99808 * 10 9 7 37 37 H 1.08995 * 109.47177 * 60.00433 * 10 9 7 38 38 H 0.96997 * 120.00092 * 359.97438 * 13 11 10 39 39 H 0.96998 * 119.99618 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.47413 * 172.93077 * 23 22 4 41 41 H 1.09008 * 109.46866 * 292.93000 * 23 22 4 42 42 H 1.09000 * 109.47523 * 52.92373 * 23 22 4 43 43 H 1.09007 * 109.47104 * 8.60719 * 24 22 4 44 44 H 1.09000 * 109.47589 * 128.60545 * 24 22 4 45 45 H 1.08996 * 109.47393 * 248.61007 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5490 -0.7754 1.4717 6 7 3.2693 0.0659 2.6379 7 6 4.2815 0.4958 3.4172 8 8 5.4268 0.1856 3.1519 9 7 4.0242 1.2692 4.4904 10 6 5.1245 1.7369 5.3370 11 6 4.5724 2.5776 6.4594 12 8 3.3773 2.7670 6.5440 13 7 5.4066 3.1189 7.3691 14 6 4.9043 3.8833 8.3904 15 1 3.8402 4.0519 8.4657 16 6 5.7643 4.4418 9.3279 17 7 7.0591 4.2370 9.2360 18 14 5.0800 5.4838 10.7191 19 1 4.1423 4.6691 11.5328 20 1 6.1954 5.9584 11.5770 21 1 4.3582 6.6520 10.1537 22 6 2.2367 -1.1221 -0.7647 23 6 3.5494 -0.7780 -1.4712 24 6 1.3589 -2.1576 -1.4704 25 1 -0.3633 0.8491 0.5788 26 1 -0.3633 0.0767 -1.0248 27 1 -0.3633 -0.9259 0.4459 28 1 3.1818 1.3090 0.4460 29 1 2.2774 1.7413 -1.0247 30 1 1.5804 2.0744 0.5788 31 1 1.6113 -1.8578 1.2692 32 1 4.2013 -0.2375 0.7837 33 1 4.0400 -1.6932 1.7951 34 1 2.3557 0.3142 2.8489 35 1 3.1104 1.5163 4.7022 36 1 5.6538 0.8791 5.7516 37 1 5.8130 2.3352 4.7404 38 1 6.3622 2.9672 7.3016 39 1 7.6594 4.6267 9.8908 40 1 3.4380 -0.9390 -2.5434 41 1 3.7996 0.2664 -1.2847 42 1 4.3461 -1.4162 -1.0888 43 1 0.7295 -2.6611 -0.7365 44 1 0.7296 -1.6588 -2.2075 45 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346248473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:10 Heat of formation + Delta-G solvation = -59.163275 kcal Electronic energy + Delta-G solvation = -23906.619459 eV Core-core repulsion = 20345.423208 eV Total energy + Delta-G solvation = -3561.196252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.43047 -39.39760 -38.12076 -34.52771 -34.24464 -33.59539 -31.44058 -31.35995 -29.55940 -28.78573 -27.34338 -26.50535 -25.14143 -24.11011 -20.65554 -19.80378 -19.55453 -18.30866 -17.99633 -17.81014 -16.22286 -15.92047 -15.57574 -15.22049 -14.97301 -14.67232 -14.48796 -14.29192 -13.95795 -13.83775 -13.51486 -13.36664 -13.01923 -12.68423 -12.62682 -12.46658 -12.24893 -12.16544 -12.13996 -12.03693 -11.83552 -11.61434 -11.28074 -11.09066 -11.02958 -10.49688 -10.30321 -10.15101 -9.75512 -9.60920 -9.57233 -9.07013 -8.60154 -8.53045 -8.08110 -6.49579 -3.91620 2.75975 3.14890 3.22418 3.26150 3.40418 3.46240 3.77697 4.10505 4.22725 4.32318 4.37668 4.63190 4.77265 4.83033 4.93533 5.02068 5.17124 5.19081 5.28130 5.29656 5.39605 5.52137 5.57080 5.63182 5.65267 5.69889 5.71807 5.75137 5.77288 5.88629 5.95216 6.01162 6.04012 6.07257 6.11109 6.18867 6.57895 6.80317 7.17509 7.47414 7.94172 8.30223 8.47415 8.85692 9.06406 9.41648 9.89713 10.67304 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035306 B = 0.002410 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.881340 B =11616.176224 C =12053.030484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.158 4.158 5 C 0.168 3.832 6 N -0.744 5.744 7 C 0.704 3.296 8 O -0.600 6.600 9 N -0.725 5.725 10 C 0.129 3.871 11 C 0.429 3.571 12 O -0.598 6.598 13 N -0.550 5.550 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 -10.195 -19.950 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.180 4.180 4 C -0.177 4.177 5 C 0.044 3.956 6 N -0.401 5.401 7 C 0.403 3.597 8 O -0.479 6.479 9 N -0.382 5.382 10 C 0.000 4.000 11 C 0.215 3.785 12 O -0.485 6.485 13 N -0.184 5.184 14 C -0.435 4.435 15 H 0.122 0.878 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.108 4.108 23 C -0.181 4.181 24 C -0.170 4.170 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.020 -10.266 -19.977 24.204 hybrid contribution -0.511 0.603 0.972 1.253 sum -9.531 -9.663 -19.004 23.353 Atomic orbital electron populations 1.21348 0.92035 1.02015 1.01769 1.21751 0.94625 0.91293 1.03645 1.21465 1.01083 0.93721 1.01748 1.22977 0.98862 1.02109 0.93748 1.20636 0.94652 0.94311 0.85965 1.45017 1.08955 1.56302 1.29783 1.15865 0.84762 0.79162 0.79882 1.90900 1.19800 1.63065 1.74160 1.44767 1.11598 1.54111 1.27757 1.20768 0.88858 0.98616 0.91717 1.19779 0.87426 0.85835 0.85486 1.90487 1.15416 1.65496 1.77082 1.41783 1.09271 1.43880 1.23515 1.19673 0.94919 1.25862 1.02997 0.87765 1.25323 0.95068 0.98173 0.99182 1.69608 1.02188 1.44698 1.37025 0.85873 0.78156 0.79832 0.80092 1.19800 1.20868 1.19795 1.21685 0.98085 0.99389 0.91628 1.21450 0.94740 1.02163 0.99777 1.21324 0.98583 0.97143 0.99952 0.92008 0.92262 0.92471 0.91347 0.92298 0.92004 0.87375 0.91193 0.91480 0.76953 0.75653 0.90073 0.90084 0.77010 0.91552 0.92150 0.91662 0.91843 0.92422 0.92147 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 8.88 37.16 0.33 -0.45 16 2 C -0.11 -0.89 2.70 -154.47 -0.42 -1.30 16 3 C -0.12 -1.07 8.01 37.16 0.30 -0.77 16 4 C -0.16 -1.32 5.09 -90.62 -0.46 -1.79 16 5 C 0.17 1.83 4.58 -4.04 -0.02 1.81 16 6 N -0.74 -9.14 4.97 -65.22 -0.32 -9.47 16 7 C 0.70 11.63 8.57 -86.92 -0.74 10.89 16 8 O -0.60 -11.96 16.34 5.29 0.09 -11.87 16 9 N -0.72 -12.41 5.53 -66.42 -0.37 -12.78 16 10 C 0.13 2.45 6.15 -5.19 -0.03 2.41 16 11 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 12 O -0.60 -15.38 15.24 5.55 0.08 -15.30 16 13 N -0.55 -13.76 5.29 -10.96 -0.06 -13.81 16 14 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 18 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 22 C -0.11 -0.81 2.70 -154.48 -0.42 -1.22 16 23 C -0.12 -0.94 8.28 37.16 0.31 -0.63 16 24 C -0.11 -0.70 8.80 37.16 0.33 -0.38 16 25 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 26 H 0.06 0.37 8.02 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 7.78 -51.93 -0.40 -0.04 16 28 H 0.07 0.70 5.08 -51.93 -0.26 0.43 16 29 H 0.06 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.06 0.54 7.92 -51.93 -0.41 0.12 16 31 H 0.11 0.86 7.96 -51.93 -0.41 0.45 16 32 H 0.07 0.81 5.22 -51.93 -0.27 0.54 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.14 8.49 -40.82 -0.35 3.79 16 35 H 0.41 6.76 7.45 -40.82 -0.30 6.46 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.40 9.55 7.90 -40.82 -0.32 9.22 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.06 0.39 8.02 -51.93 -0.42 -0.02 16 41 H 0.06 0.53 5.61 -51.92 -0.29 0.24 16 42 H 0.06 0.49 7.84 -51.93 -0.41 0.09 16 43 H 0.06 0.34 7.78 -51.92 -0.40 -0.06 16 44 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 45 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -31.32 364.91 -7.64 -38.96 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.11 Total: 15.97 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -1.16 Total: 10.52 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.03 Total: -59.38 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: 0.17 Total: -27.17 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.32 -7.64 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346248473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.208 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds