Wall clock time and date at job start Tue Mar 31 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.54764 * 2 1 4 4 C 1.52993 * 117.49959 * 145.67308 * 2 1 3 5 5 C 1.53002 * 117.49764 * 214.98314 * 4 2 1 6 6 N 1.46498 * 109.47325 * 71.55836 * 5 4 2 7 7 C 1.34784 * 119.99976 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34766 * 120.00094 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00124 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99761 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99996 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99855 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00219 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99813 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00201 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47598 * 59.99501 * 18 16 14 20 20 H 1.48510 * 109.47030 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47385 * 299.99317 * 18 16 14 22 22 C 1.52997 * 60.03377 * 107.47695 * 4 2 1 23 23 C 1.52997 * 117.49881 * 107.50173 * 22 4 2 24 24 C 1.52996 * 117.50025 * 252.52011 * 22 4 2 25 25 H 1.08998 * 109.47136 * 325.71891 * 1 2 3 26 26 H 1.09001 * 109.46719 * 85.72122 * 1 2 3 27 27 H 1.09001 * 109.46908 * 205.71653 * 1 2 3 28 28 H 1.08995 * 109.47107 * 154.27678 * 3 2 1 29 29 H 1.08994 * 109.47112 * 274.27972 * 3 2 1 30 30 H 1.08998 * 109.46889 * 34.27699 * 3 2 1 31 31 H 1.09005 * 117.49999 * 359.97161 * 4 2 1 32 32 H 1.09003 * 109.47011 * 311.55483 * 5 4 2 33 33 H 1.09002 * 109.47415 * 191.56312 * 5 4 2 34 34 H 0.96997 * 120.00203 * 359.97438 * 6 5 4 35 35 H 0.97004 * 120.00006 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.46999 * 299.99808 * 10 9 7 37 37 H 1.08995 * 109.47177 * 60.00433 * 10 9 7 38 38 H 0.96997 * 120.00092 * 359.97438 * 13 11 10 39 39 H 0.96998 * 119.99618 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.47413 * 172.93077 * 23 22 4 41 41 H 1.09008 * 109.46866 * 292.93000 * 23 22 4 42 42 H 1.09000 * 109.47523 * 52.92373 * 23 22 4 43 43 H 1.09007 * 109.47104 * 8.60719 * 24 22 4 44 44 H 1.09000 * 109.47589 * 128.60545 * 24 22 4 45 45 H 1.08996 * 109.47393 * 248.61007 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5490 -0.7754 1.4717 6 7 3.2693 0.0659 2.6379 7 6 4.2815 0.4958 3.4172 8 8 5.4268 0.1856 3.1519 9 7 4.0242 1.2692 4.4904 10 6 5.1245 1.7369 5.3370 11 6 4.5724 2.5776 6.4594 12 8 3.3773 2.7670 6.5440 13 7 5.4066 3.1189 7.3691 14 6 4.9043 3.8833 8.3904 15 1 3.8402 4.0519 8.4657 16 6 5.7643 4.4418 9.3279 17 7 7.0591 4.2370 9.2360 18 14 5.0800 5.4838 10.7191 19 1 4.1423 4.6691 11.5328 20 1 6.1954 5.9584 11.5770 21 1 4.3582 6.6520 10.1537 22 6 2.2367 -1.1221 -0.7647 23 6 3.5494 -0.7780 -1.4712 24 6 1.3589 -2.1576 -1.4704 25 1 -0.3633 0.8491 0.5788 26 1 -0.3633 0.0767 -1.0248 27 1 -0.3633 -0.9259 0.4459 28 1 3.1818 1.3090 0.4460 29 1 2.2774 1.7413 -1.0247 30 1 1.5804 2.0744 0.5788 31 1 1.6113 -1.8578 1.2692 32 1 4.2013 -0.2375 0.7837 33 1 4.0400 -1.6932 1.7951 34 1 2.3557 0.3142 2.8489 35 1 3.1104 1.5163 4.7022 36 1 5.6538 0.8791 5.7516 37 1 5.8130 2.3352 4.7404 38 1 6.3622 2.9672 7.3016 39 1 7.6594 4.6267 9.8908 40 1 3.4380 -0.9390 -2.5434 41 1 3.7996 0.2664 -1.2847 42 1 4.3461 -1.4162 -1.0888 43 1 0.7295 -2.6611 -0.7365 44 1 0.7296 -1.6588 -2.2075 45 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346248473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:10 Heat of formation + Delta-G solvation = -80.742750 kcal Electronic energy + Delta-G solvation = -23907.555216 eV Core-core repulsion = 20345.423208 eV Total energy + Delta-G solvation = -3562.132008 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42253 -40.58736 -39.85602 -36.25566 -35.49136 -35.24793 -33.36490 -32.02857 -30.49035 -29.51148 -28.73046 -27.07895 -26.56309 -25.45913 -21.97142 -21.36570 -20.63529 -20.09746 -19.32147 -18.59645 -17.44137 -17.36009 -17.07073 -16.48581 -16.35631 -15.92384 -15.75521 -15.55762 -15.23283 -15.12716 -14.82167 -14.19402 -13.93804 -13.82688 -13.54808 -13.53134 -13.24846 -13.19640 -13.06385 -12.89727 -12.88731 -12.73558 -12.63856 -12.46461 -12.13326 -12.01963 -11.63132 -11.55619 -11.49485 -10.55312 -10.51905 -10.40853 -10.18101 -10.09377 -9.75855 -8.50225 -6.00576 1.38654 1.42627 1.52543 1.59964 1.90645 2.13665 2.28814 2.65315 3.08553 3.16911 3.36528 3.56335 3.71504 3.82750 4.14538 4.21112 4.22258 4.29774 4.43547 4.46759 4.52834 4.60968 4.75516 4.77030 4.81159 4.94317 4.99398 5.07343 5.09132 5.11932 5.15438 5.18850 5.26509 5.32143 5.39050 5.41371 5.42861 5.51353 5.57544 5.92073 5.98056 6.48796 7.03908 7.05050 7.43525 7.55158 7.95088 8.66498 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035306 B = 0.002410 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.881340 B =11616.176224 C =12053.030484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.161 4.161 5 C 0.170 3.830 6 N -0.726 5.726 7 C 0.704 3.296 8 O -0.634 6.634 9 N -0.724 5.724 10 C 0.142 3.858 11 C 0.434 3.566 12 O -0.624 6.624 13 N -0.560 5.560 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.012 4.012 17 N -0.916 5.916 18 Si 0.998 3.002 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.102 4.102 23 C -0.126 4.126 24 C -0.111 4.111 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 -10.544 -20.596 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.179 4.179 4 C -0.179 4.179 5 C 0.046 3.954 6 N -0.381 5.381 7 C 0.403 3.597 8 O -0.516 6.516 9 N -0.382 5.382 10 C 0.013 3.987 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.195 5.195 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.102 4.102 23 C -0.183 4.183 24 C -0.168 4.168 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.244 0.756 35 H 0.247 0.753 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.126 -10.634 -20.653 25.341 hybrid contribution -0.179 0.680 1.088 1.295 sum -10.306 -9.954 -19.565 24.250 Atomic orbital electron populations 1.21346 0.90917 1.02338 1.02339 1.21782 0.95347 0.90646 1.03405 1.21430 1.00101 0.94430 1.01906 1.22902 0.97769 1.02878 0.94355 1.20689 0.96121 0.93348 0.85224 1.44932 1.08633 1.55356 1.29209 1.15961 0.84970 0.78895 0.79839 1.90877 1.21436 1.64322 1.74976 1.44679 1.11207 1.54417 1.27880 1.20571 0.89273 0.98261 0.90562 1.20405 0.86912 0.84998 0.85562 1.90464 1.16643 1.66252 1.77802 1.41834 1.09563 1.44325 1.23790 1.19702 0.94483 1.27768 1.04709 0.89538 1.26144 0.95296 0.98769 1.01007 1.69678 1.03011 1.45129 1.37821 0.84921 0.77791 0.78123 0.77105 1.19469 1.19658 1.19453 1.21788 0.98135 0.99439 0.90870 1.21464 0.94732 1.01515 1.00594 1.21336 0.98522 0.96841 1.00116 0.92141 0.91502 0.91789 0.93114 0.91765 0.92107 0.86448 0.91984 0.92372 0.75613 0.75270 0.89153 0.89154 0.76704 0.91068 0.90951 0.92514 0.92339 0.91941 0.91391 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 8.88 71.98 0.64 -0.65 16 2 C -0.11 -1.57 2.70 -52.16 -0.14 -1.71 16 3 C -0.12 -2.01 8.01 71.98 0.58 -1.43 16 4 C -0.16 -2.45 5.09 -10.80 -0.05 -2.51 16 5 C 0.17 3.59 4.58 86.38 0.40 3.99 16 6 N -0.73 -17.31 4.97 -478.53 -2.38 -19.69 16 7 C 0.70 22.93 8.57 179.06 1.53 24.47 16 8 O -0.63 -25.17 16.34 -3.98 -0.07 -25.24 16 9 N -0.72 -24.42 5.53 -482.31 -2.67 -27.09 16 10 C 0.14 5.34 6.15 85.64 0.53 5.86 16 11 C 0.43 20.22 7.85 87.66 0.69 20.91 16 12 O -0.62 -32.28 15.24 -3.06 -0.05 -32.33 16 13 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 14 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 15 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 16 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 17 N -0.92 -48.97 13.05 21.66 0.28 -48.68 16 18 Si 1.00 41.83 29.55 68.60 2.03 43.86 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 C -0.10 -1.36 2.70 -52.16 -0.14 -1.50 16 23 C -0.13 -1.77 8.28 71.98 0.60 -1.18 16 24 C -0.11 -1.12 8.80 71.98 0.63 -0.48 16 25 H 0.06 0.71 7.92 -2.39 -0.02 0.70 16 26 H 0.07 0.68 8.02 -2.39 -0.02 0.66 16 27 H 0.06 0.66 7.78 -2.39 -0.02 0.64 16 28 H 0.05 1.02 5.08 -2.39 -0.01 1.00 16 29 H 0.06 0.97 7.85 -2.39 -0.02 0.96 16 30 H 0.06 1.00 7.92 -2.39 -0.02 0.98 16 31 H 0.12 1.62 7.96 -2.38 -0.02 1.60 16 32 H 0.06 1.44 5.22 -2.39 -0.01 1.43 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.41 8.03 8.49 -92.71 -0.79 7.25 16 35 H 0.41 13.40 7.45 -92.71 -0.69 12.71 16 36 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 39 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.07 0.83 8.02 -2.39 -0.02 0.81 16 41 H 0.06 0.89 5.61 -2.38 -0.01 0.88 16 42 H 0.06 0.87 7.84 -2.39 -0.02 0.86 16 43 H 0.06 0.58 7.78 -2.38 -0.02 0.56 16 44 H 0.07 0.60 8.02 -2.39 -0.02 0.58 16 45 H 0.06 0.61 8.09 -2.39 -0.02 0.59 16 Total: -1.00 -66.15 364.91 0.88 -65.27 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -1.18 Total: 46.05 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 6.53 Total: 27.80 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -6.39 Total: -125.42 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -0.11 Total: -57.57 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -66.15 0.88 -65.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346248473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.471 kcal (2) G-P(sol) polarization free energy of solvation -66.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds