Wall clock time and date at job start Tue Mar 31 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 N 1.46509 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00011 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99941 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99689 * 180.02562 * 5 4 3 8 8 N 1.46501 * 109.46722 * 180.02562 * 7 5 4 9 9 C 1.46504 * 119.99618 * 269.99797 * 8 7 5 10 10 C 1.34771 * 120.00160 * 89.99867 * 8 7 5 11 11 O 1.21284 * 120.00253 * 359.97438 * 10 8 7 12 12 C 1.50707 * 120.00031 * 179.97438 * 10 8 7 13 13 N 1.46500 * 109.46992 * 180.02562 * 12 10 8 14 14 C 1.36936 * 119.99755 * 269.99789 * 13 12 10 15 15 H 1.08006 * 119.99636 * 192.36975 * 14 13 12 16 16 C 1.38809 * 120.00234 * 12.36902 * 14 13 12 17 17 N 1.31618 * 119.99851 * 25.58527 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 205.58568 * 16 14 13 19 19 H 1.48505 * 109.47338 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47207 * 119.99987 * 18 16 14 21 21 H 1.48498 * 109.47292 * 239.99990 * 18 16 14 22 22 C 1.46496 * 120.00127 * 90.00166 * 13 12 10 23 23 C 1.52997 * 117.50132 * 194.11958 * 22 13 12 24 24 C 1.52995 * 117.50130 * 125.45777 * 22 13 12 25 25 H 1.09000 * 109.46624 * 60.00253 * 1 2 3 26 26 H 1.08996 * 109.47035 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47478 * 300.00444 * 1 2 3 28 28 H 1.08999 * 109.47478 * 239.99556 * 2 1 3 29 29 H 1.09005 * 109.47311 * 119.99734 * 2 1 3 30 30 H 1.09001 * 109.47271 * 60.00026 * 3 2 1 31 31 H 1.09000 * 109.47216 * 299.99385 * 3 2 1 32 32 H 0.97001 * 119.99684 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.47124 * 59.99899 * 7 5 4 34 34 H 1.09000 * 109.46745 * 299.99637 * 7 5 4 35 35 H 1.09005 * 109.46972 * 270.00070 * 9 8 7 36 36 H 1.08989 * 109.47491 * 30.00014 * 9 8 7 37 37 H 1.09001 * 109.46664 * 150.00310 * 9 8 7 38 38 H 1.09000 * 109.46552 * 59.99934 * 12 10 8 39 39 H 1.09001 * 109.46945 * 299.99932 * 12 10 8 40 40 H 0.97005 * 120.00018 * 175.35083 * 17 16 14 41 41 H 1.09004 * 115.55153 * 339.79194 * 22 13 12 42 42 H 1.09005 * 117.49604 * 0.02562 * 23 22 13 43 43 H 1.09002 * 117.50115 * 145.01513 * 23 22 13 44 44 H 1.09003 * 117.50415 * 214.98067 * 24 22 13 45 45 H 1.09003 * 117.49987 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0012 6 8 3.5725 3.6601 0.0008 7 6 5.6859 2.6097 0.0013 8 7 6.1742 3.9910 0.0027 9 6 6.4184 4.6828 -1.2655 10 6 6.3987 4.6252 1.1704 11 8 6.1961 4.0527 2.2202 12 6 6.9016 6.0459 1.1718 13 7 7.0647 6.5048 2.5534 14 6 6.0230 7.1150 3.1997 15 1 6.1940 7.6293 4.1340 16 6 4.7474 7.0727 2.6541 17 7 4.4088 6.0891 1.8478 18 14 3.5112 8.4118 3.0642 19 1 4.1347 9.3958 3.9853 20 1 3.0934 9.0990 1.8157 21 1 2.3231 7.8057 3.7170 22 6 8.3423 6.3110 3.2436 23 6 8.3609 6.4998 4.7618 24 6 9.0109 7.5453 3.8522 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6025 0.0013 33 1 6.0493 2.0963 -0.8889 34 1 6.0491 2.0955 0.8911 35 1 7.4479 4.5118 -1.5802 36 1 5.7377 4.2994 -2.0255 37 1 6.2514 5.7519 -1.1341 38 1 6.1839 6.6858 0.6583 39 1 7.8619 6.0919 0.6582 40 1 3.4982 6.0221 1.5202 41 1 8.9915 5.5425 2.8241 42 1 7.4223 6.7678 5.2471 43 1 9.0224 5.8556 5.3411 44 1 10.0999 7.5886 3.8334 45 1 8.5004 8.5017 3.7386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355950381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:02 Heat of formation + Delta-G solvation = -4.179665 kcal Electronic energy + Delta-G solvation = -25395.764844 eV Core-core repulsion = 21836.952861 eV Total energy + Delta-G solvation = -3558.811983 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.42200 -38.11542 -36.67371 -35.50778 -34.14685 -33.22540 -32.44388 -30.41890 -28.89029 -26.48521 -26.04274 -24.69211 -23.38439 -21.66731 -21.33711 -20.27321 -19.73569 -18.41070 -16.71005 -16.28006 -16.01511 -15.85534 -15.57369 -15.48762 -14.59635 -14.25811 -14.05708 -14.02298 -13.69690 -13.16008 -12.72604 -12.58288 -12.46704 -12.22758 -12.12633 -12.03177 -11.72129 -11.59901 -11.27201 -11.21563 -11.09440 -10.92195 -10.69281 -10.60202 -10.37564 -10.19042 -9.85723 -9.65305 -9.34375 -9.28417 -8.69352 -8.44726 -8.17546 -7.66746 -6.65477 -5.63770 -2.93722 3.26419 3.40616 3.46539 3.54680 3.57686 4.04053 4.36195 4.61652 4.78237 4.86082 4.98787 5.09914 5.27432 5.33710 5.44021 5.54155 5.55543 5.56952 5.69472 5.71665 5.76711 5.91200 5.93694 6.00535 6.05362 6.12655 6.14701 6.23919 6.28152 6.32089 6.52336 6.60826 6.69318 6.78188 6.99604 7.15252 7.18158 7.35385 7.90298 7.95744 8.37417 8.56665 8.83388 9.28108 9.77302 9.97755 10.37895 11.43792 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.004666 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.487322 B = 5999.170834 C = 6889.295763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.122 3.878 4 N -0.746 5.746 5 C 0.485 3.515 6 O -0.491 6.491 7 C 0.108 3.892 8 N -0.617 5.617 9 C 0.097 3.903 10 C 0.538 3.462 11 O -0.521 6.521 12 C 0.172 3.828 13 N -0.537 5.537 14 C -0.270 4.270 15 H 0.079 0.921 16 C 0.007 3.993 17 N -0.868 5.868 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.295 1.295 22 C 0.134 3.866 23 C -0.201 4.201 24 C -0.224 4.224 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.393 0.607 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -11.077 -8.800 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.002 4.002 4 N -0.402 5.402 5 C 0.269 3.731 6 O -0.362 6.362 7 C -0.020 4.020 8 N -0.355 5.355 9 C -0.047 4.047 10 C 0.326 3.674 11 O -0.393 6.393 12 C 0.042 3.958 13 N -0.252 5.252 14 C -0.399 4.399 15 H 0.096 0.904 16 C -0.193 4.193 17 N -0.510 5.510 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.222 1.222 22 C 0.024 3.976 23 C -0.241 4.241 24 C -0.265 4.265 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.226 0.774 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.718 -10.508 -8.333 13.431 hybrid contribution -0.921 0.022 0.267 0.959 sum -0.203 -10.486 -8.066 13.231 Atomic orbital electron populations 1.21678 0.94891 1.01780 1.02376 1.21721 0.96729 0.96359 1.02364 1.21252 0.80564 0.96288 1.02107 1.46080 1.06703 1.08780 1.78600 1.21622 0.91395 0.83619 0.76496 1.90802 1.69611 1.30587 1.45197 1.20959 0.90247 0.87491 1.03338 1.47833 1.68473 1.11980 1.07234 1.21507 0.98762 0.98589 0.85883 1.22016 0.75102 0.88632 0.81634 1.90502 1.50904 1.66865 1.31072 1.20607 0.97187 0.91414 0.86615 1.43531 1.08044 1.64496 1.09147 1.19064 0.87184 1.26754 1.06848 0.90373 1.24836 0.96778 0.97554 1.00175 1.69725 1.18582 1.26791 1.35940 0.86302 0.81280 0.82307 0.77352 1.20530 1.21688 1.22200 1.20852 0.89890 0.95468 0.91428 1.23108 1.02234 1.03223 0.95496 1.23415 0.97716 0.96622 1.08785 0.92475 0.92452 0.92315 0.91612 0.91452 0.91858 0.92135 0.77430 0.89588 0.88222 0.94069 0.92856 0.90987 0.88408 0.94279 0.92652 0.89484 0.88558 0.90819 0.90821 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.24 6.05 -26.73 -0.16 -1.40 16 3 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 4 N -0.75 -10.29 5.56 -60.29 -0.33 -10.63 16 5 C 0.48 8.89 7.90 -10.98 -0.09 8.80 16 6 O -0.49 -11.57 16.43 5.56 0.09 -11.47 16 7 C 0.11 1.78 5.89 -5.19 -0.03 1.75 16 8 N -0.62 -11.99 2.36 -182.95 -0.43 -12.42 16 9 C 0.10 1.50 10.24 59.85 0.61 2.11 16 10 C 0.54 12.94 5.64 -10.98 -0.06 12.87 16 11 O -0.52 -14.78 15.44 5.55 0.09 -14.69 16 12 C 0.17 4.07 4.03 -5.19 -0.02 4.05 16 13 N -0.54 -13.80 2.38 -167.02 -0.40 -14.19 16 14 C -0.27 -7.59 8.90 -15.06 -0.13 -7.73 16 15 H 0.08 2.20 6.27 -52.48 -0.33 1.88 16 16 C 0.01 0.21 4.82 -17.43 -0.08 0.12 16 17 N -0.87 -25.67 8.87 55.49 0.49 -25.17 16 18 Si 0.90 22.85 29.63 -169.99 -5.04 17.81 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 22 C 0.13 2.98 6.60 -67.94 -0.45 2.53 16 23 C -0.20 -4.23 9.77 -26.70 -0.26 -4.49 16 24 C -0.22 -4.39 10.14 -26.70 -0.27 -4.66 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 4.00 8.47 -40.82 -0.35 3.66 16 33 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.10 1.71 7.42 -51.93 -0.39 1.32 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.07 1.20 6.44 -51.93 -0.33 0.87 16 38 H 0.10 2.50 5.86 -51.93 -0.30 2.19 16 39 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 40 H 0.26 8.01 8.32 -40.82 -0.34 7.67 16 41 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 42 H 0.10 2.23 6.43 -51.93 -0.33 1.90 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -36.52 368.66 -8.07 -44.60 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.50 Total: 5.97 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -0.60 Total: 14.64 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.67 Total: -62.41 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.18 Total: -26.17 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.04 Total: 17.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.52 -8.07 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355950381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.418 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds