Wall clock time and date at job start Tue Mar 31 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 N 1.46509 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00011 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99941 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99689 * 180.02562 * 5 4 3 8 8 N 1.46501 * 109.46722 * 180.02562 * 7 5 4 9 9 C 1.46504 * 119.99618 * 269.99797 * 8 7 5 10 10 C 1.34771 * 120.00160 * 89.99867 * 8 7 5 11 11 O 1.21284 * 120.00253 * 359.97438 * 10 8 7 12 12 C 1.50707 * 120.00031 * 179.97438 * 10 8 7 13 13 N 1.46500 * 109.46992 * 180.02562 * 12 10 8 14 14 C 1.36936 * 119.99755 * 269.99789 * 13 12 10 15 15 H 1.08006 * 119.99636 * 192.36975 * 14 13 12 16 16 C 1.38809 * 120.00234 * 12.36902 * 14 13 12 17 17 N 1.31618 * 119.99851 * 25.58527 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 205.58568 * 16 14 13 19 19 H 1.48505 * 109.47338 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47207 * 119.99987 * 18 16 14 21 21 H 1.48498 * 109.47292 * 239.99990 * 18 16 14 22 22 C 1.46496 * 120.00127 * 90.00166 * 13 12 10 23 23 C 1.52997 * 117.50132 * 194.11958 * 22 13 12 24 24 C 1.52995 * 117.50130 * 125.45777 * 22 13 12 25 25 H 1.09000 * 109.46624 * 60.00253 * 1 2 3 26 26 H 1.08996 * 109.47035 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47478 * 300.00444 * 1 2 3 28 28 H 1.08999 * 109.47478 * 239.99556 * 2 1 3 29 29 H 1.09005 * 109.47311 * 119.99734 * 2 1 3 30 30 H 1.09001 * 109.47271 * 60.00026 * 3 2 1 31 31 H 1.09000 * 109.47216 * 299.99385 * 3 2 1 32 32 H 0.97001 * 119.99684 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.47124 * 59.99899 * 7 5 4 34 34 H 1.09000 * 109.46745 * 299.99637 * 7 5 4 35 35 H 1.09005 * 109.46972 * 270.00070 * 9 8 7 36 36 H 1.08989 * 109.47491 * 30.00014 * 9 8 7 37 37 H 1.09001 * 109.46664 * 150.00310 * 9 8 7 38 38 H 1.09000 * 109.46552 * 59.99934 * 12 10 8 39 39 H 1.09001 * 109.46945 * 299.99932 * 12 10 8 40 40 H 0.97005 * 120.00018 * 175.35083 * 17 16 14 41 41 H 1.09004 * 115.55153 * 339.79194 * 22 13 12 42 42 H 1.09005 * 117.49604 * 0.02562 * 23 22 13 43 43 H 1.09002 * 117.50115 * 145.01513 * 23 22 13 44 44 H 1.09003 * 117.50415 * 214.98067 * 24 22 13 45 45 H 1.09003 * 117.49987 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0012 6 8 3.5725 3.6601 0.0008 7 6 5.6859 2.6097 0.0013 8 7 6.1742 3.9910 0.0027 9 6 6.4184 4.6828 -1.2655 10 6 6.3987 4.6252 1.1704 11 8 6.1961 4.0527 2.2202 12 6 6.9016 6.0459 1.1718 13 7 7.0647 6.5048 2.5534 14 6 6.0230 7.1150 3.1997 15 1 6.1940 7.6293 4.1340 16 6 4.7474 7.0727 2.6541 17 7 4.4088 6.0891 1.8478 18 14 3.5112 8.4118 3.0642 19 1 4.1347 9.3958 3.9853 20 1 3.0934 9.0990 1.8157 21 1 2.3231 7.8057 3.7170 22 6 8.3423 6.3110 3.2436 23 6 8.3609 6.4998 4.7618 24 6 9.0109 7.5453 3.8522 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6025 0.0013 33 1 6.0493 2.0963 -0.8889 34 1 6.0491 2.0955 0.8911 35 1 7.4479 4.5118 -1.5802 36 1 5.7377 4.2994 -2.0255 37 1 6.2514 5.7519 -1.1341 38 1 6.1839 6.6858 0.6583 39 1 7.8619 6.0919 0.6582 40 1 3.4982 6.0221 1.5202 41 1 8.9915 5.5425 2.8241 42 1 7.4223 6.7678 5.2471 43 1 9.0224 5.8556 5.3411 44 1 10.0999 7.5886 3.8334 45 1 8.5004 8.5017 3.7386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355950381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:02 Heat of formation + Delta-G solvation = -29.797701 kcal Electronic energy + Delta-G solvation = -25396.875726 eV Core-core repulsion = 21836.952861 eV Total energy + Delta-G solvation = -3559.922865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92176 -39.77641 -38.38794 -36.71077 -35.77428 -35.16364 -33.53432 -32.40826 -30.30667 -28.22511 -27.23007 -26.26569 -25.12125 -22.96544 -22.58141 -21.78610 -21.47988 -20.03782 -18.23186 -18.03409 -17.66099 -17.40186 -17.17159 -16.61512 -16.19943 -15.90050 -15.83618 -15.39172 -15.32187 -14.49125 -14.26279 -13.92415 -13.82919 -13.71754 -13.51185 -13.33249 -13.11502 -13.06208 -12.91648 -12.71569 -12.59558 -12.36377 -12.22011 -12.05913 -12.05116 -11.82248 -11.76897 -11.65457 -10.97214 -10.87774 -10.38635 -10.18778 -9.98386 -9.21159 -8.61780 -7.78309 -5.07740 1.39645 1.42963 1.53033 1.85033 2.07524 2.46668 2.64770 2.73711 3.18085 3.49250 3.52712 3.91177 4.03654 4.07571 4.20928 4.28764 4.33769 4.43152 4.46054 4.47262 4.52858 4.61004 4.64655 4.73716 4.86578 4.90386 4.93966 4.96985 5.01682 5.02287 5.09786 5.21768 5.25063 5.33461 5.35136 5.53507 5.59648 5.75118 5.92752 6.30577 6.72357 6.86773 7.17750 7.50503 7.85896 8.09389 8.31170 9.23200 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.004666 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.487322 B = 5999.170834 C = 6889.295763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.121 3.879 4 N -0.726 5.726 5 C 0.477 3.523 6 O -0.553 6.553 7 C 0.107 3.893 8 N -0.618 5.618 9 C 0.093 3.907 10 C 0.538 3.462 11 O -0.576 6.576 12 C 0.173 3.827 13 N -0.558 5.558 14 C -0.267 4.267 15 H 0.071 0.929 16 C -0.045 4.045 17 N -0.880 5.880 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.309 1.309 22 C 0.107 3.893 23 C -0.206 4.206 24 C -0.193 4.193 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.144 0.856 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.243 0.757 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -12.469 -10.011 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.003 4.003 4 N -0.382 5.382 5 C 0.262 3.738 6 O -0.429 6.429 7 C -0.020 4.020 8 N -0.354 5.354 9 C -0.050 4.050 10 C 0.327 3.673 11 O -0.453 6.453 12 C 0.043 3.957 13 N -0.274 5.274 14 C -0.397 4.397 15 H 0.088 0.912 16 C -0.242 4.242 17 N -0.524 5.524 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.237 1.237 22 C -0.002 4.002 23 C -0.244 4.244 24 C -0.233 4.233 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.251 0.749 33 H 0.161 0.839 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.589 -11.946 -9.587 15.535 hybrid contribution -1.425 0.394 0.627 1.606 sum 1.164 -11.552 -8.960 14.666 Atomic orbital electron populations 1.21700 0.94340 1.02933 1.01845 1.21665 0.97086 0.93341 1.03811 1.21299 0.80107 0.98850 1.00025 1.45909 1.07094 1.08635 1.76536 1.22055 0.92348 0.83774 0.75578 1.90789 1.70835 1.32890 1.48387 1.21234 0.88956 0.86184 1.05658 1.47713 1.67172 1.13198 1.07272 1.21726 1.01612 0.97263 0.84381 1.21900 0.74607 0.88646 0.82127 1.90461 1.53455 1.68098 1.33280 1.20571 0.98171 0.90967 0.85972 1.43681 1.08539 1.65206 1.09947 1.19179 0.87964 1.26166 1.06364 0.91168 1.25441 0.98388 0.99185 1.01231 1.69941 1.17264 1.27890 1.37296 0.85453 0.78961 0.80417 0.77022 1.19367 1.21649 1.23725 1.21182 0.89186 0.97727 0.92081 1.23107 1.01826 1.04567 0.94947 1.23370 0.99577 0.94647 1.05700 0.92430 0.90380 0.93560 0.89242 0.90766 0.95383 0.92964 0.74945 0.83882 0.88895 0.89923 0.91310 0.92885 0.90946 0.90775 0.94702 0.87779 0.91580 0.88091 0.86866 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.12 -2.04 6.05 30.59 0.19 -1.85 16 3 C 0.12 3.23 5.67 86.38 0.49 3.72 16 4 N -0.73 -19.44 5.56 -463.03 -2.57 -22.01 16 5 C 0.48 17.49 7.90 87.66 0.69 18.18 16 6 O -0.55 -27.03 16.43 -3.03 -0.05 -27.08 16 7 C 0.11 3.36 5.89 85.63 0.50 3.86 16 8 N -0.62 -23.48 2.36 -851.11 -2.01 -25.49 16 9 C 0.09 2.71 10.24 127.77 1.31 4.01 16 10 C 0.54 26.10 5.64 87.66 0.49 26.60 16 11 O -0.58 -33.43 15.44 -3.04 -0.05 -33.48 16 12 C 0.17 8.23 4.03 85.64 0.35 8.57 16 13 N -0.56 -28.83 2.38 -682.34 -1.62 -30.45 16 14 C -0.27 -15.36 8.90 84.03 0.75 -14.61 16 15 H 0.07 4.06 6.27 -2.91 -0.02 4.04 16 16 C -0.04 -2.63 4.82 84.86 0.41 -2.22 16 17 N -0.88 -54.24 8.87 21.65 0.19 -54.05 16 18 Si 0.95 48.76 29.63 68.60 2.03 50.80 16 19 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 21 H -0.31 -16.42 7.11 99.48 0.71 -15.72 16 22 C 0.11 4.63 6.60 44.99 0.30 4.92 16 23 C -0.21 -8.39 9.77 30.62 0.30 -8.09 16 24 C -0.19 -7.07 10.14 30.62 0.31 -6.76 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.41 7.49 8.47 -92.71 -0.79 6.70 16 33 H 0.14 2.79 8.07 -2.39 -0.02 2.78 16 34 H 0.09 3.09 7.42 -2.39 -0.02 3.08 16 35 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 1.79 8.07 -2.39 -0.02 1.77 16 37 H 0.05 1.75 6.44 -2.39 -0.02 1.74 16 38 H 0.07 3.80 5.86 -2.39 -0.01 3.79 16 39 H 0.07 2.90 8.04 -2.39 -0.02 2.88 16 40 H 0.24 15.65 8.32 -92.70 -0.77 14.88 16 41 H 0.10 4.10 8.14 -2.38 -0.02 4.08 16 42 H 0.07 3.10 6.43 -2.38 -0.02 3.08 16 43 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -84.60 368.66 2.91 -81.69 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.19 Total: 25.40 kcal Atomic # 6 Polarization: 27.88 SS G_CDS: 6.80 Total: 34.67 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -6.01 Total: -132.00 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -0.10 Total: -60.56 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.80 kcal Total: -84.60 2.91 -81.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355950381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.889 kcal (2) G-P(sol) polarization free energy of solvation -84.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds