Wall clock time and date at job start Tue Mar 31 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.52998 * 109.47436 * 175.07627 * 3 2 1 5 5 H 1.08995 * 109.58508 * 59.70283 * 4 3 2 6 6 C 1.53199 * 109.58423 * 299.27970 * 4 3 2 7 7 C 1.53042 * 109.30863 * 185.57733 * 6 4 3 8 8 C 1.53043 * 109.53983 * 61.36725 * 7 6 4 9 9 C 1.53621 * 109.23705 * 298.50780 * 8 7 6 10 10 N 1.46919 * 108.54830 * 54.85715 * 9 8 7 11 11 C 1.34774 * 120.63336 * 126.36552 * 10 9 8 12 12 O 1.21583 * 120.00227 * 185.34554 * 11 10 9 13 13 N 1.34781 * 119.99841 * 5.34181 * 11 10 9 14 14 C 1.46504 * 119.99963 * 175.01083 * 13 11 10 15 15 C 1.50697 * 109.46843 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00160 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99644 * 179.72606 * 15 14 13 18 18 C 1.37101 * 119.99539 * 180.27817 * 17 15 14 19 19 H 1.07994 * 120.00429 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99662 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46770 * 90.00530 * 22 20 18 24 24 H 1.48494 * 109.46859 * 209.99984 * 22 20 18 25 25 H 1.48496 * 109.47048 * 330.00164 * 22 20 18 26 26 H 1.08992 * 109.47348 * 300.00043 * 1 2 3 27 27 H 1.08999 * 109.47313 * 60.00568 * 1 2 3 28 28 H 1.09006 * 109.47023 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47807 * 240.00088 * 2 1 3 30 30 H 1.09005 * 109.47182 * 119.99870 * 2 1 3 31 31 H 1.08999 * 109.46959 * 55.07322 * 3 2 1 32 32 H 1.09000 * 109.47139 * 295.07575 * 3 2 1 33 33 H 1.09000 * 109.49904 * 305.52435 * 6 4 3 34 34 H 1.08999 * 109.50055 * 65.59188 * 6 4 3 35 35 H 1.09001 * 109.45530 * 181.38560 * 7 6 4 36 36 H 1.08993 * 109.46352 * 301.35340 * 7 6 4 37 37 H 1.08993 * 109.49842 * 58.58246 * 8 7 6 38 38 H 1.09004 * 109.49427 * 178.64878 * 8 7 6 39 39 H 1.09003 * 109.74008 * 295.11471 * 9 8 7 40 40 H 1.09002 * 109.66407 * 174.55585 * 9 8 7 41 41 H 0.97003 * 120.00019 * 355.01427 * 13 11 10 42 42 H 1.09008 * 109.46824 * 60.00560 * 14 13 11 43 43 H 1.08994 * 109.47072 * 300.00327 * 14 13 11 44 44 H 0.97001 * 120.00115 * 0.27461 * 17 15 14 45 45 H 0.96995 * 119.99864 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5649 1.4444 0.1238 5 1 4.0002 0.9016 -0.7152 6 6 3.9741 0.7754 1.4399 7 6 5.4880 0.9040 1.6236 8 6 5.8711 2.3840 1.6945 9 6 5.4845 3.0707 0.3759 10 7 4.0574 2.8286 0.1238 11 6 3.2171 3.8564 -0.1085 12 8 2.0236 3.6528 -0.2192 13 7 3.6999 5.1100 -0.2181 14 6 2.8034 6.2113 -0.5786 15 6 3.5858 7.4980 -0.6343 16 8 4.7753 7.4954 -0.3968 17 7 2.9649 8.6508 -0.9540 18 6 3.6778 9.8205 -1.0103 19 1 4.7369 9.8182 -0.7989 20 6 3.0379 11.0089 -1.3404 21 7 1.7493 11.0117 -1.5982 22 14 4.0090 12.6028 -1.4164 23 1 4.5377 12.7952 -2.7907 24 1 3.1219 13.7402 -1.0637 25 1 5.1393 12.5400 -0.4554 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6063 1.9811 0.8426 32 1 1.7504 1.9302 -0.9308 33 1 3.4641 1.2638 2.2702 34 1 3.6986 -0.2788 1.4132 35 1 5.7851 0.4073 2.5473 36 1 5.9971 0.4373 0.7804 37 1 5.3432 2.8572 2.5224 38 1 6.9463 2.4744 1.8494 39 1 6.0752 2.6572 -0.4416 40 1 5.6651 4.1428 0.4539 41 1 4.6409 5.2831 -0.0583 42 1 2.0147 6.2972 0.1689 43 1 2.3595 6.0138 -1.5542 44 1 2.0138 8.6528 -1.1443 45 1 1.3025 11.8413 -1.8283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358278605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:14 Heat of formation + Delta-G solvation = -87.959537 kcal Electronic energy + Delta-G solvation = -24666.783985 eV Core-core repulsion = 21104.339034 eV Total energy + Delta-G solvation = -3562.444951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80568 -40.25067 -38.57445 -36.56989 -36.04612 -34.96357 -33.75442 -33.34432 -31.85980 -29.27887 -27.76123 -26.42426 -25.37382 -23.77845 -22.08665 -21.89808 -21.22871 -20.63923 -20.05022 -18.90230 -17.50340 -17.25538 -17.04630 -16.49618 -16.18906 -15.96736 -15.79616 -15.41206 -15.33002 -15.16999 -14.68237 -14.56596 -14.21477 -14.12278 -13.79727 -13.54659 -13.51392 -13.42491 -12.91211 -12.76794 -12.50439 -12.46176 -12.29367 -12.12675 -11.95946 -11.80396 -11.65339 -11.57518 -11.34993 -11.26386 -10.56329 -10.28093 -10.13861 -10.06483 -9.42819 -8.51411 -6.01753 1.36047 1.41996 1.53308 1.59706 1.89006 2.13086 2.27742 2.83513 3.15285 3.15846 3.76594 3.85799 3.94185 4.08161 4.19790 4.20712 4.27456 4.32785 4.40265 4.41476 4.45720 4.57960 4.60329 4.76190 4.83382 4.91987 5.02598 5.06805 5.08303 5.11359 5.17700 5.23728 5.29808 5.36809 5.41067 5.43484 5.54395 5.55600 5.81678 5.91936 5.93655 6.47431 6.94350 7.02828 7.42021 7.56922 7.93663 8.65611 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.003062 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.877620 B = 9143.008937 C =10201.989586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.097 4.097 4 C 0.159 3.841 5 H 0.082 0.918 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.131 4.131 9 C 0.103 3.897 10 N -0.624 5.624 11 C 0.700 3.300 12 O -0.613 6.613 13 N -0.731 5.731 14 C 0.143 3.857 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.337 4.337 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.405 0.595 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.399 0.601 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -22.128 4.521 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.135 4.135 4 C 0.057 3.943 5 H 0.100 0.900 6 C -0.165 4.165 7 C -0.152 4.152 8 C -0.169 4.169 9 C -0.020 4.020 10 N -0.361 5.361 11 C 0.402 3.598 12 O -0.494 6.494 13 N -0.391 5.391 14 C 0.014 3.986 15 C 0.221 3.779 16 O -0.513 6.513 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.233 0.767 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.958 -22.093 4.526 22.896 hybrid contribution 0.023 1.413 -0.147 1.421 sum 3.980 -20.679 4.379 21.509 Atomic orbital electron populations 1.21713 0.96147 1.01703 1.01071 1.21721 0.95951 0.96134 1.02634 1.21913 0.93217 0.95665 1.02685 1.21352 0.94894 0.79327 0.98749 0.89988 1.22038 0.96956 1.01565 0.95936 1.21517 0.94992 0.95392 1.03304 1.21978 1.02475 0.96624 0.95856 1.21955 0.80125 1.00812 0.99075 1.47402 1.08675 1.05425 1.74605 1.16042 0.85028 0.80625 0.78086 1.90940 1.14984 1.83380 1.60096 1.45081 1.13530 1.05504 1.74980 1.20543 0.91918 0.83757 1.02377 1.20411 0.88197 0.85823 0.83501 1.90457 1.16933 1.86790 1.57084 1.41834 1.11666 1.06179 1.59731 1.19743 0.94792 0.85355 1.46773 0.89561 1.26143 0.96835 1.02492 0.95663 1.69682 1.09755 1.30132 1.46065 0.84861 0.77795 0.76401 0.78892 1.19503 1.19637 1.19414 0.93724 0.93954 0.91400 0.91357 0.90587 0.93419 0.92542 0.93083 0.88501 0.90239 0.90418 0.92921 0.88770 0.89516 0.91206 0.75449 0.89381 0.89213 0.76727 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.91 71.98 0.71 -2.09 16 2 C -0.13 -2.27 5.73 30.59 0.18 -2.09 16 3 C -0.10 -2.42 3.14 30.59 0.10 -2.33 16 4 C 0.16 3.35 3.01 44.98 0.14 3.49 16 5 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 6 C -0.13 -2.00 4.87 30.67 0.15 -1.85 16 7 C -0.11 -1.45 5.88 30.62 0.18 -1.27 16 8 C -0.13 -2.07 6.10 30.82 0.19 -1.89 16 9 C 0.10 2.09 6.41 86.51 0.55 2.65 16 10 N -0.62 -16.02 2.97 -812.07 -2.41 -18.43 16 11 C 0.70 23.58 8.21 179.05 1.47 25.05 16 12 O -0.61 -23.51 11.75 -3.98 -0.05 -23.55 16 13 N -0.73 -25.80 5.44 -482.29 -2.62 -28.43 16 14 C 0.14 5.49 6.16 85.63 0.53 6.01 16 15 C 0.43 20.50 7.85 87.66 0.69 21.19 16 16 O -0.62 -32.77 15.24 -3.08 -0.05 -32.81 16 17 N -0.56 -28.52 5.29 -306.98 -1.62 -30.14 16 18 C -0.34 -18.75 9.68 84.04 0.81 -17.94 16 19 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -49.09 13.05 21.67 0.28 -48.81 16 22 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.10 6.33 -2.38 -0.02 1.09 16 31 H 0.05 1.46 7.03 -2.39 -0.02 1.44 16 32 H 0.06 1.77 6.45 -2.39 -0.02 1.75 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.12 6.66 -2.39 -0.02 1.11 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.62 5.65 -2.39 -0.01 1.61 16 41 H 0.41 14.16 4.93 -92.71 -0.46 13.70 16 42 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 43 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 45 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -66.19 353.32 1.53 -64.66 By element: Atomic # 1 Polarization: 44.89 SS G_CDS: -0.19 Total: 44.71 kcal Atomic # 6 Polarization: 22.67 SS G_CDS: 6.16 Total: 28.83 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -6.37 Total: -125.80 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.09 Total: -56.37 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -66.19 1.53 -64.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.300 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds