Wall clock time and date at job start Tue Mar 31 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 H 1.09001 * 108.31451 * 302.61773 * 3 2 1 5 5 C 1.52558 * 108.51628 * 185.00170 * 3 2 1 6 6 C 1.50871 * 109.35980 * 153.72771 * 5 3 2 7 7 C 1.53946 * 110.09703 * 91.88537 * 6 5 3 8 8 N 1.47605 * 112.14242 * 319.43737 * 7 6 5 9 9 C 1.34776 * 118.64038 * 137.86882 * 8 7 6 10 10 O 1.21588 * 120.00122 * 5.21100 * 9 8 7 11 11 N 1.34773 * 119.99939 * 185.21625 * 9 8 7 12 12 C 1.46501 * 120.00445 * 175.02705 * 11 9 8 13 13 C 1.50691 * 109.47615 * 179.97438 * 12 11 9 14 14 O 1.21299 * 120.00078 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00386 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00310 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99728 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00260 * 179.72705 * 16 15 13 19 19 N 1.31412 * 119.99488 * 0.26975 * 18 16 15 20 20 Si 1.86800 * 120.00168 * 180.27330 * 18 16 15 21 21 H 1.48504 * 109.46767 * 89.99846 * 20 18 16 22 22 H 1.48495 * 109.46827 * 209.99633 * 20 18 16 23 23 H 1.48489 * 109.47010 * 329.99872 * 20 18 16 24 24 C 1.44576 * 122.71445 * 318.14540 * 8 7 6 25 25 C 1.47098 * 108.51313 * 60.23013 * 3 2 1 26 26 H 1.09006 * 109.46754 * 299.99903 * 1 2 3 27 27 H 1.09003 * 109.47010 * 59.99656 * 1 2 3 28 28 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46696 * 240.00290 * 2 1 3 30 30 H 1.08998 * 109.47051 * 119.99853 * 2 1 3 31 31 H 1.08998 * 109.48948 * 33.75776 * 5 3 2 32 32 H 1.09000 * 109.50992 * 273.70719 * 5 3 2 33 33 H 1.09004 * 109.36797 * 331.69467 * 6 5 3 34 34 H 1.09000 * 109.36725 * 212.08044 * 6 5 3 35 35 H 1.09004 * 108.94878 * 198.75288 * 7 6 5 36 36 H 1.08998 * 108.94472 * 80.12850 * 7 6 5 37 37 H 0.96999 * 119.99904 * 355.02634 * 11 9 8 38 38 H 1.08999 * 109.46816 * 59.99570 * 12 11 9 39 39 H 1.08999 * 109.46779 * 300.00364 * 12 11 9 40 40 H 0.97000 * 119.99683 * 359.97438 * 15 13 12 41 41 H 0.97003 * 119.99368 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.44872 * 210.48334 * 24 8 7 43 43 H 1.09002 * 109.44907 * 330.40574 * 24 8 7 44 44 H 1.09007 * 109.33174 * 304.32417 * 25 3 2 45 45 H 1.09004 * 109.32335 * 63.97144 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6284 1.9514 -0.8716 5 6 3.5603 1.4189 -0.1261 6 6 4.0296 2.7051 -0.7598 7 6 4.3571 3.7426 0.3294 8 7 3.3733 3.7237 1.4296 9 6 3.8202 3.8185 2.6975 10 8 5.0011 4.0121 2.9130 11 7 2.9582 3.6986 3.7266 12 6 3.4577 3.6924 5.1038 13 6 2.3000 3.5484 6.0575 14 8 1.1686 3.4602 5.6291 15 7 2.5214 3.5187 7.3867 16 6 1.4681 3.3872 8.2544 17 1 0.4609 3.3078 7.8728 18 6 1.6969 3.3509 9.6244 19 7 2.9225 3.4480 10.0886 20 14 0.2625 3.1640 10.8063 21 1 0.0152 1.7219 11.0604 22 1 0.5842 3.8442 12.0866 23 1 -0.9520 3.7773 10.2115 24 6 1.9505 3.6019 1.2035 25 6 1.5429 2.1137 1.2108 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8605 0.5760 -0.7486 32 1 4.0061 1.3170 0.8633 33 1 3.2450 3.0964 -1.4074 34 1 4.9225 2.5106 -1.3539 35 1 4.3670 4.7359 -0.1195 36 1 5.3461 3.5296 0.7351 37 1 2.0070 3.6164 3.5554 38 1 3.9797 4.6278 5.3051 39 1 4.1450 2.8569 5.2372 40 1 3.4261 3.5897 7.7293 41 1 3.0822 3.4223 11.0450 42 1 1.4114 4.1249 1.9934 43 1 1.6973 4.0420 0.2389 44 1 0.4561 2.0361 1.2459 45 1 1.9676 1.6310 2.0910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358315779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:54 Heat of formation + Delta-G solvation = -79.620814 kcal Electronic energy + Delta-G solvation = -24880.920754 eV Core-core repulsion = 21318.837397 eV Total energy + Delta-G solvation = -3562.083357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59251 -38.64402 -37.93827 -35.12378 -34.54581 -33.85143 -32.79436 -31.34491 -30.68147 -27.98059 -26.68406 -25.20962 -24.38564 -22.94756 -21.30817 -20.29574 -19.60706 -19.25717 -18.24452 -17.77524 -16.40803 -15.88751 -15.64214 -15.08187 -14.92856 -14.73820 -14.67140 -14.42855 -14.02758 -13.80800 -13.68724 -13.23073 -13.04897 -12.89701 -12.51909 -12.33303 -12.14101 -11.92234 -11.75346 -11.61677 -11.45149 -11.15647 -11.11385 -10.97496 -10.61484 -10.49499 -10.45093 -10.39974 -10.30350 -9.85770 -9.61974 -8.85304 -8.60074 -8.36832 -8.08090 -6.49872 -3.91770 2.79270 3.12583 3.22834 3.28223 3.41857 3.77313 4.04596 4.20183 4.45486 4.58359 4.62975 4.84338 4.91902 4.98227 5.04694 5.13827 5.18957 5.23907 5.31570 5.38286 5.51918 5.59052 5.62519 5.69822 5.80210 5.83608 5.89192 5.92843 5.96434 5.97782 6.04065 6.09125 6.10967 6.11794 6.24287 6.36053 6.67242 6.81613 7.09611 7.47422 7.94212 8.22828 8.47222 8.83289 9.06333 9.41571 9.89526 10.67106 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003369 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.310326 B = 8308.752165 C = 9328.948371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C -0.082 4.082 4 H 0.064 0.936 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.131 3.869 8 N -0.622 5.622 9 C 0.703 3.297 10 O -0.598 6.598 11 N -0.725 5.725 12 C 0.127 3.873 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.111 3.889 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -3.206 -20.698 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.100 4.100 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.169 4.169 7 C 0.008 3.992 8 N -0.359 5.359 9 C 0.404 3.596 10 O -0.478 6.478 11 N -0.384 5.384 12 C -0.002 4.002 13 C 0.215 3.785 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.013 4.013 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.247 0.753 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.026 -3.123 -20.600 20.836 hybrid contribution -0.603 -0.145 0.825 1.032 sum -0.577 -3.268 -19.775 20.052 Atomic orbital electron populations 1.21888 0.95968 1.01529 1.02019 1.21704 0.95913 0.96591 1.01818 1.20082 0.95344 0.96021 0.98557 0.91753 1.21123 0.95253 0.96983 1.01585 1.21779 1.01814 0.95721 0.97545 1.21635 0.92719 0.98229 0.86569 1.46812 1.06584 1.77926 1.04627 1.15898 0.84965 0.78131 0.80654 1.90879 1.15519 1.57305 1.84053 1.44985 1.10855 1.78030 1.04507 1.20781 0.95899 1.02998 0.80506 1.19771 0.89617 0.85451 0.83652 1.90485 1.23583 1.57254 1.77137 1.41787 1.10553 1.62185 1.03905 1.19723 0.89536 1.47554 0.86579 0.87706 1.25319 0.97760 0.96881 0.97764 1.69620 1.19586 1.49213 1.15087 0.85819 0.80681 0.78482 0.79086 1.20291 1.20815 1.19325 1.21394 0.81008 0.96441 1.02457 1.21400 1.01764 0.95892 0.98955 0.91991 0.92933 0.93011 0.92316 0.92009 0.91985 0.91456 0.91717 0.90780 0.92479 0.89300 0.75311 0.90042 0.90182 0.77029 0.91615 0.90511 0.90458 0.90125 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.52 37.16 0.35 -0.93 16 2 C -0.12 -1.06 5.25 -26.73 -0.14 -1.20 16 3 C -0.08 -0.72 1.70 -93.68 -0.16 -0.88 16 4 H 0.06 0.52 7.36 -51.93 -0.38 0.14 16 5 C -0.11 -1.03 4.93 -28.03 -0.14 -1.17 16 6 C -0.13 -1.07 5.71 -27.31 -0.16 -1.23 16 7 C 0.13 1.43 6.07 -2.94 -0.02 1.42 16 8 N -0.62 -8.06 2.25 -178.63 -0.40 -8.46 16 9 C 0.70 11.92 8.20 -86.92 -0.71 11.21 16 10 O -0.60 -12.01 15.67 5.29 0.08 -11.92 16 11 N -0.72 -12.69 5.36 -66.42 -0.36 -13.04 16 12 C 0.13 2.42 6.16 -5.20 -0.03 2.39 16 13 C 0.43 9.94 7.85 -10.99 -0.09 9.86 16 14 O -0.60 -15.28 15.24 5.54 0.08 -15.20 16 15 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 17 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.11 1.20 5.03 -4.39 -0.02 1.17 16 25 C -0.14 -1.46 4.69 -28.88 -0.14 -1.59 16 26 H 0.06 0.55 6.27 -51.93 -0.33 0.22 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.51 7.72 -51.93 -0.40 0.11 16 32 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 33 H 0.06 0.47 7.32 -51.93 -0.38 0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.13 7.02 -51.93 -0.36 0.77 16 37 H 0.41 6.99 5.08 -40.82 -0.21 6.78 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.40 9.54 7.90 -40.82 -0.32 9.21 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.08 0.89 6.38 -51.93 -0.33 0.56 16 43 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.08 0.77 5.97 -51.92 -0.31 0.46 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -31.01 353.14 -8.25 -39.26 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.14 Total: 14.37 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -1.49 Total: 11.18 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.09 Total: -58.55 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: 0.17 Total: -27.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.01 -8.25 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.366 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds