Wall clock time and date at job start Tue Mar 31 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 H 1.09001 * 108.31451 * 302.61773 * 3 2 1 5 5 C 1.52558 * 108.51628 * 185.00170 * 3 2 1 6 6 C 1.50871 * 109.35980 * 153.72771 * 5 3 2 7 7 C 1.53946 * 110.09703 * 91.88537 * 6 5 3 8 8 N 1.47605 * 112.14242 * 319.43737 * 7 6 5 9 9 C 1.34776 * 118.64038 * 137.86882 * 8 7 6 10 10 O 1.21588 * 120.00122 * 5.21100 * 9 8 7 11 11 N 1.34773 * 119.99939 * 185.21625 * 9 8 7 12 12 C 1.46501 * 120.00445 * 175.02705 * 11 9 8 13 13 C 1.50691 * 109.47615 * 179.97438 * 12 11 9 14 14 O 1.21299 * 120.00078 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00386 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00310 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99728 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00260 * 179.72705 * 16 15 13 19 19 N 1.31412 * 119.99488 * 0.26975 * 18 16 15 20 20 Si 1.86800 * 120.00168 * 180.27330 * 18 16 15 21 21 H 1.48504 * 109.46767 * 89.99846 * 20 18 16 22 22 H 1.48495 * 109.46827 * 209.99633 * 20 18 16 23 23 H 1.48489 * 109.47010 * 329.99872 * 20 18 16 24 24 C 1.44576 * 122.71445 * 318.14540 * 8 7 6 25 25 C 1.47098 * 108.51313 * 60.23013 * 3 2 1 26 26 H 1.09006 * 109.46754 * 299.99903 * 1 2 3 27 27 H 1.09003 * 109.47010 * 59.99656 * 1 2 3 28 28 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46696 * 240.00290 * 2 1 3 30 30 H 1.08998 * 109.47051 * 119.99853 * 2 1 3 31 31 H 1.08998 * 109.48948 * 33.75776 * 5 3 2 32 32 H 1.09000 * 109.50992 * 273.70719 * 5 3 2 33 33 H 1.09004 * 109.36797 * 331.69467 * 6 5 3 34 34 H 1.09000 * 109.36725 * 212.08044 * 6 5 3 35 35 H 1.09004 * 108.94878 * 198.75288 * 7 6 5 36 36 H 1.08998 * 108.94472 * 80.12850 * 7 6 5 37 37 H 0.96999 * 119.99904 * 355.02634 * 11 9 8 38 38 H 1.08999 * 109.46816 * 59.99570 * 12 11 9 39 39 H 1.08999 * 109.46779 * 300.00364 * 12 11 9 40 40 H 0.97000 * 119.99683 * 359.97438 * 15 13 12 41 41 H 0.97003 * 119.99368 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.44872 * 210.48334 * 24 8 7 43 43 H 1.09002 * 109.44907 * 330.40574 * 24 8 7 44 44 H 1.09007 * 109.33174 * 304.32417 * 25 3 2 45 45 H 1.09004 * 109.32335 * 63.97144 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6284 1.9514 -0.8716 5 6 3.5603 1.4189 -0.1261 6 6 4.0296 2.7051 -0.7598 7 6 4.3571 3.7426 0.3294 8 7 3.3733 3.7237 1.4296 9 6 3.8202 3.8185 2.6975 10 8 5.0011 4.0121 2.9130 11 7 2.9582 3.6986 3.7266 12 6 3.4577 3.6924 5.1038 13 6 2.3000 3.5484 6.0575 14 8 1.1686 3.4602 5.6291 15 7 2.5214 3.5187 7.3867 16 6 1.4681 3.3872 8.2544 17 1 0.4609 3.3078 7.8728 18 6 1.6969 3.3509 9.6244 19 7 2.9225 3.4480 10.0886 20 14 0.2625 3.1640 10.8063 21 1 0.0152 1.7219 11.0604 22 1 0.5842 3.8442 12.0866 23 1 -0.9520 3.7773 10.2115 24 6 1.9505 3.6019 1.2035 25 6 1.5429 2.1137 1.2108 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8605 0.5760 -0.7486 32 1 4.0061 1.3170 0.8633 33 1 3.2450 3.0964 -1.4074 34 1 4.9225 2.5106 -1.3539 35 1 4.3670 4.7359 -0.1195 36 1 5.3461 3.5296 0.7351 37 1 2.0070 3.6164 3.5554 38 1 3.9797 4.6278 5.3051 39 1 4.1450 2.8569 5.2372 40 1 3.4261 3.5897 7.7293 41 1 3.0822 3.4223 11.0450 42 1 1.4114 4.1249 1.9934 43 1 1.6973 4.0420 0.2389 44 1 0.4561 2.0361 1.2459 45 1 1.9676 1.6310 2.0910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358315779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:54 Heat of formation + Delta-G solvation = -99.408122 kcal Electronic energy + Delta-G solvation = -24881.778796 eV Core-core repulsion = 21318.837397 eV Total energy + Delta-G solvation = -3562.941399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76510 -40.24626 -39.23268 -36.30961 -36.07850 -35.48357 -33.79290 -33.33624 -31.49219 -29.45039 -27.78533 -26.42064 -25.86790 -23.85141 -22.26918 -21.40853 -21.00821 -20.55057 -20.04503 -19.15060 -17.66117 -17.36109 -17.06099 -16.58187 -16.16706 -16.05522 -15.88834 -15.64675 -15.34956 -15.13068 -15.00946 -14.36030 -13.96497 -13.89542 -13.70153 -13.60031 -13.52920 -13.23678 -13.06978 -12.90458 -12.67575 -12.45578 -12.24308 -12.12434 -11.86823 -11.76858 -11.57044 -11.39602 -11.30747 -11.19968 -11.04464 -10.55833 -10.27880 -10.09441 -9.47701 -8.50969 -6.01255 1.36358 1.42343 1.53724 1.60234 1.89016 2.09783 2.28213 2.86617 3.16171 3.16942 3.68165 3.82261 3.89137 4.04191 4.18185 4.20549 4.28221 4.39759 4.42194 4.44172 4.49329 4.57197 4.61615 4.74542 4.81737 4.89340 4.94963 5.00484 5.14787 5.18559 5.23075 5.25845 5.31538 5.33606 5.38683 5.38934 5.52097 5.59243 5.71245 5.89716 5.92356 6.47770 6.92206 7.03193 7.41526 7.51023 7.93837 8.66065 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003369 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.310326 B = 8308.752165 C = 9328.948371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.079 4.079 4 H 0.086 0.914 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.126 3.874 8 N -0.612 5.612 9 C 0.698 3.302 10 O -0.633 6.633 11 N -0.726 5.726 12 C 0.140 3.860 13 C 0.434 3.566 14 O -0.622 6.622 15 N -0.559 5.559 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.997 3.003 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.108 3.892 25 C -0.135 4.135 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.398 0.602 41 H 0.280 0.720 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -3.222 -22.473 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.097 4.097 4 H 0.105 0.895 5 C -0.148 4.148 6 C -0.158 4.158 7 C 0.004 3.996 8 N -0.348 5.348 9 C 0.399 3.601 10 O -0.515 6.515 11 N -0.385 5.385 12 C 0.011 3.989 13 C 0.221 3.779 14 O -0.510 6.510 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.557 5.557 20 Si 0.820 3.180 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.016 4.016 25 C -0.174 4.174 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.249 0.751 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.734 -3.146 -22.419 22.651 hybrid contribution -0.350 -0.151 1.307 1.361 sum -1.084 -3.296 -21.113 21.396 Atomic orbital electron populations 1.21878 0.95554 1.01734 1.02143 1.21686 0.96252 0.96432 1.01499 1.20071 0.95132 0.96133 0.98399 0.89549 1.21113 0.95331 0.98245 1.00128 1.21754 1.03355 0.94088 0.96619 1.21849 0.91161 1.00166 0.86425 1.46923 1.07956 1.76373 1.03542 1.16071 0.84311 0.77998 0.81681 1.90849 1.16863 1.59001 1.84798 1.44921 1.11036 1.78484 1.04073 1.20576 0.94105 1.03684 0.80529 1.20363 0.90274 0.83649 0.83599 1.90460 1.25083 1.57899 1.77586 1.41829 1.10272 1.62884 1.04409 1.19747 0.89439 1.49725 0.87710 0.89505 1.26139 1.00403 0.95845 0.98733 1.69689 1.21072 1.49119 1.15782 0.84861 0.77404 0.78693 0.76994 1.19546 1.19661 1.19353 1.21587 0.79393 0.96849 1.03745 1.21351 1.02158 0.95400 0.98481 0.93028 0.91556 0.92868 0.91030 0.93940 0.90651 0.94739 0.89512 0.89025 0.90903 0.91625 0.75098 0.89266 0.89374 0.76752 0.91071 0.91587 0.87193 0.89237 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.52 71.98 0.69 -1.61 16 2 C -0.12 -1.91 5.25 30.60 0.16 -1.75 16 3 C -0.08 -1.23 1.70 -12.78 -0.02 -1.25 16 4 H 0.09 1.03 7.36 -2.39 -0.02 1.01 16 5 C -0.11 -1.84 4.93 29.76 0.15 -1.70 16 6 C -0.12 -1.63 5.71 30.22 0.17 -1.46 16 7 C 0.13 2.56 6.07 86.49 0.53 3.09 16 8 N -0.61 -15.39 2.25 -837.32 -1.89 -17.28 16 9 C 0.70 23.92 8.20 179.06 1.47 25.38 16 10 O -0.63 -25.81 15.67 -3.99 -0.06 -25.87 16 11 N -0.73 -25.83 5.36 -482.32 -2.59 -28.42 16 12 C 0.14 5.43 6.16 85.63 0.53 5.96 16 13 C 0.43 20.55 7.85 87.65 0.69 21.23 16 14 O -0.62 -32.53 15.24 -3.09 -0.05 -32.57 16 15 N -0.56 -28.52 5.29 -306.98 -1.62 -30.14 16 16 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 17 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 19 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 20 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.11 2.15 5.03 87.18 0.44 2.59 16 25 C -0.14 -2.67 4.69 29.20 0.14 -2.53 16 26 H 0.05 0.86 6.27 -2.38 -0.01 0.84 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.95 7.95 -2.39 -0.02 0.93 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.07 7.72 -2.39 -0.02 1.05 16 32 H 0.03 0.81 7.48 -2.39 -0.02 0.79 16 33 H 0.09 0.86 7.32 -2.39 -0.02 0.84 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.07 1.66 7.02 -2.39 -0.02 1.65 16 37 H 0.41 14.31 5.08 -92.71 -0.47 13.84 16 38 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 41 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.07 1.49 6.38 -2.39 -0.02 1.47 16 43 H 0.11 1.53 8.06 -2.39 -0.02 1.51 16 44 H 0.09 1.61 5.97 -2.38 -0.01 1.60 16 45 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -67.48 353.14 2.11 -65.37 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.20 Total: 43.83 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: 6.21 Total: 29.97 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -5.81 Total: -124.68 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -0.11 Total: -58.45 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.48 2.11 -65.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.038 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds