Wall clock time and date at job start Tue Mar 31 2020 03:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47383 * 2 1 4 4 H 1.09000 * 108.44754 * 57.31206 * 3 2 1 5 5 C 1.52569 * 108.51625 * 175.00094 * 3 2 1 6 6 C 1.50877 * 109.36294 * 206.26559 * 5 3 2 7 7 C 1.53946 * 110.09646 * 268.11493 * 6 5 3 8 8 N 1.47605 * 112.14091 * 40.56976 * 7 6 5 9 9 C 1.34781 * 118.63837 * 222.12669 * 8 7 6 10 10 O 1.21581 * 120.00206 * 354.78957 * 9 8 7 11 11 N 1.34775 * 119.99531 * 174.78083 * 9 8 7 12 12 C 1.46504 * 119.99730 * 184.97497 * 11 9 8 13 13 C 1.50698 * 109.46800 * 180.02562 * 12 11 9 14 14 O 1.21286 * 120.00554 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99767 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99977 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00215 * 0.02562 * 16 15 13 18 18 C 1.38959 * 120.00228 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00296 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99676 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47160 * 89.99741 * 20 18 16 22 22 H 1.48498 * 109.47245 * 209.99738 * 20 18 16 23 23 H 1.48504 * 109.47513 * 330.00051 * 20 18 16 24 24 C 1.44575 * 122.71714 * 42.14746 * 8 7 6 25 25 C 1.47093 * 108.51822 * 299.77131 * 3 2 1 26 26 H 1.08997 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46549 * 299.99565 * 1 2 3 28 28 H 1.08997 * 109.47283 * 59.99842 * 1 2 3 29 29 H 1.09010 * 109.47261 * 240.00232 * 2 1 3 30 30 H 1.09003 * 109.47616 * 120.00781 * 2 1 3 31 31 H 1.09000 * 109.48997 * 326.23192 * 5 3 2 32 32 H 1.08999 * 109.49003 * 86.27769 * 5 3 2 33 33 H 1.08997 * 109.36798 * 28.31040 * 6 5 3 34 34 H 1.09001 * 109.36639 * 148.05113 * 6 5 3 35 35 H 1.09004 * 108.94664 * 161.24850 * 7 6 5 36 36 H 1.09001 * 108.94841 * 279.96819 * 7 6 5 37 37 H 0.96998 * 120.00382 * 4.97671 * 11 9 8 38 38 H 1.09004 * 109.46869 * 300.00010 * 12 11 9 39 39 H 1.08996 * 109.47424 * 60.00209 * 12 11 9 40 40 H 0.97003 * 120.00165 * 0.02562 * 15 13 12 41 41 H 0.96991 * 120.00490 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.44649 * 29.29129 * 24 8 7 43 43 H 1.09001 * 109.44721 * 149.23947 * 24 8 7 44 44 H 1.09002 * 109.32589 * 296.20345 * 25 3 2 45 45 H 1.09001 * 109.32617 * 55.67716 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6285 1.9538 0.8702 5 6 3.5603 1.4188 0.1261 6 6 4.0298 2.7051 0.7596 7 6 4.3573 3.7425 -0.3297 8 7 3.3733 3.7236 -1.4297 9 6 3.8201 3.8183 -2.6978 10 8 5.0008 4.0117 -2.9135 11 7 2.9578 3.6984 -3.7267 12 6 3.4573 3.6920 -5.1039 13 6 2.2992 3.5480 -6.0574 14 8 1.1680 3.4599 -5.6289 15 7 2.5205 3.5182 -7.3866 16 6 1.4671 3.3867 -8.2541 17 1 0.4598 3.3074 -7.8724 18 6 1.6952 3.3555 -9.6245 19 7 0.6854 3.2299 -10.4560 20 14 3.4372 3.4919 -10.2846 21 1 4.0282 2.1350 -10.4062 22 1 3.4113 4.1419 -11.6195 23 1 4.2573 4.3072 -9.3529 24 6 1.9501 3.6083 -1.2031 25 6 1.5428 2.1138 -1.2107 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8605 0.5760 0.7487 32 1 4.0057 1.3167 -0.8635 33 1 3.2453 3.0964 1.4073 34 1 4.9241 2.5110 1.3518 35 1 4.3674 4.7358 0.1191 36 1 5.3455 3.5283 -0.7367 37 1 2.0066 3.6163 -3.5553 38 1 3.9792 4.6275 -5.3054 39 1 4.1443 2.8565 -5.2374 40 1 3.4251 3.5891 -7.7295 41 1 0.8446 3.2077 -11.4125 42 1 1.6995 4.0479 -0.2377 43 1 1.4131 4.1348 -1.9921 44 1 1.9651 1.6292 -2.0911 45 1 0.4562 2.0362 -1.2457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358315780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:56 Heat of formation + Delta-G solvation = -72.471531 kcal Electronic energy + Delta-G solvation = -24930.797412 eV Core-core repulsion = 21369.024071 eV Total energy + Delta-G solvation = -3561.773341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64562 -38.76809 -38.06238 -35.17346 -34.62669 -33.91563 -32.85327 -31.77762 -30.68616 -28.13725 -26.76988 -25.24652 -24.25886 -22.96632 -21.32360 -20.31555 -19.68179 -19.36472 -18.68569 -17.83270 -16.48436 -15.94044 -15.66582 -15.19504 -14.94588 -14.88745 -14.82112 -14.50136 -14.06121 -13.89811 -13.52941 -13.11359 -13.05653 -12.94207 -12.59194 -12.41724 -12.36109 -12.13959 -12.03723 -11.81588 -11.48405 -11.22846 -11.17337 -11.01310 -10.63747 -10.63184 -10.51920 -10.42855 -10.05664 -9.93440 -9.68629 -8.93868 -8.75000 -8.43755 -8.29065 -6.39938 -3.92342 2.72274 3.00736 3.05392 3.13404 3.33627 3.59304 4.02325 4.05342 4.41366 4.55332 4.58575 4.62233 4.81145 4.94818 5.02257 5.11068 5.15294 5.21736 5.29441 5.35001 5.48541 5.55727 5.59740 5.66857 5.68349 5.78393 5.81512 5.83129 5.87252 5.88548 5.93275 5.94626 6.06659 6.08165 6.22710 6.33361 6.61706 6.69318 7.02609 7.46066 8.01393 8.14993 8.45618 8.75529 8.82780 9.31067 9.65009 10.72290 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.003495 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.023774 B = 8010.022895 C = 8915.537397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.082 4.082 4 H 0.064 0.936 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.131 3.869 8 N -0.622 5.622 9 C 0.703 3.297 10 O -0.599 6.599 11 N -0.725 5.725 12 C 0.124 3.876 13 C 0.439 3.561 14 O -0.579 6.579 15 N -0.577 5.577 16 C -0.310 4.310 17 H 0.121 0.879 18 C 0.045 3.955 19 N -0.875 5.875 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 C 0.111 3.889 25 C -0.141 4.141 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.408 0.592 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.374 0.626 41 H 0.275 0.725 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -2.684 21.986 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.100 4.100 4 H 0.083 0.917 5 C -0.149 4.149 6 C -0.169 4.169 7 C 0.008 3.992 8 N -0.359 5.359 9 C 0.404 3.596 10 O -0.478 6.478 11 N -0.385 5.385 12 C -0.005 4.005 13 C 0.225 3.775 14 O -0.463 6.463 15 N -0.214 5.214 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.514 5.514 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.014 4.014 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.248 0.752 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.177 -2.626 21.871 22.628 hybrid contribution 0.752 0.025 -0.695 1.024 sum 5.929 -2.600 21.176 22.144 Atomic orbital electron populations 1.21885 0.95925 1.01573 1.02044 1.21701 0.95952 0.96535 1.01817 1.20080 0.95318 0.96042 0.98584 0.91728 1.21126 0.95276 0.96979 1.01547 1.21783 1.01826 0.95712 0.97543 1.21653 0.92656 0.98283 0.86572 1.46816 1.06643 1.77838 1.04584 1.15880 0.84917 0.78082 0.80672 1.90875 1.15523 1.57340 1.84078 1.44967 1.10957 1.78174 1.04366 1.20804 0.95782 1.03090 0.80778 1.19664 0.89774 0.84895 0.83142 1.90526 1.23494 1.55557 1.76771 1.42116 1.09102 1.64940 1.05289 1.19437 0.89792 1.47918 0.86657 0.86101 1.25059 0.97977 0.97151 0.95699 1.69613 1.30432 1.47982 1.03384 0.86676 0.83999 0.79127 0.79735 1.19405 1.20006 1.19188 1.21534 0.80875 0.96451 1.02513 1.21491 1.01823 0.95735 0.98932 0.92984 0.92922 0.91965 0.92013 0.92309 0.91973 0.91490 0.91666 0.90769 0.92442 0.89306 0.75174 0.89911 0.90041 0.79241 0.91406 0.90373 0.90433 0.91198 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.52 37.16 0.35 -0.92 16 2 C -0.12 -1.03 5.25 -26.73 -0.14 -1.17 16 3 C -0.08 -0.70 1.71 -93.68 -0.16 -0.86 16 4 H 0.06 0.51 7.35 -51.93 -0.38 0.12 16 5 C -0.11 -0.99 4.93 -28.02 -0.14 -1.13 16 6 C -0.13 -1.02 5.71 -27.30 -0.16 -1.18 16 7 C 0.13 1.37 6.07 -2.94 -0.02 1.35 16 8 N -0.62 -7.71 2.24 -178.24 -0.40 -8.11 16 9 C 0.70 11.41 8.19 -86.92 -0.71 10.69 16 10 O -0.60 -11.49 15.66 5.29 0.08 -11.40 16 11 N -0.73 -12.09 5.36 -66.41 -0.36 -12.45 16 12 C 0.12 2.22 6.16 -5.19 -0.03 2.19 16 13 C 0.44 9.72 7.85 -10.98 -0.09 9.63 16 14 O -0.58 -14.57 15.24 5.55 0.08 -14.48 16 15 N -0.58 -13.46 5.09 -10.96 -0.06 -13.52 16 16 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16 17 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 18 C 0.05 1.21 5.50 -17.46 -0.10 1.12 16 19 N -0.88 -25.00 13.96 55.50 0.77 -24.22 16 20 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 24 C 0.11 1.14 5.08 -4.07 -0.02 1.12 16 25 C -0.14 -1.41 4.69 -28.56 -0.13 -1.54 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.54 6.27 -51.93 -0.33 0.22 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.45 7.95 -51.93 -0.41 0.04 16 31 H 0.06 0.49 7.72 -51.93 -0.40 0.09 16 32 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 33 H 0.06 0.45 7.32 -51.93 -0.38 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 37 H 0.41 6.73 5.09 -40.82 -0.21 6.52 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 41 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.08 0.87 6.39 -51.93 -0.33 0.54 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.75 5.97 -51.93 -0.31 0.44 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -32.04 350.07 -7.89 -39.94 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -7.10 Total: 14.01 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -1.49 Total: 10.61 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.04 Total: -58.30 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.17 Total: -25.89 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.04 -7.89 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.533 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds