Wall clock time and date at job start Tue Mar 31 2020 03:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47383 * 2 1 4 4 H 1.09000 * 108.44754 * 57.31206 * 3 2 1 5 5 C 1.52569 * 108.51625 * 175.00094 * 3 2 1 6 6 C 1.50877 * 109.36294 * 206.26559 * 5 3 2 7 7 C 1.53946 * 110.09646 * 268.11493 * 6 5 3 8 8 N 1.47605 * 112.14091 * 40.56976 * 7 6 5 9 9 C 1.34781 * 118.63837 * 222.12669 * 8 7 6 10 10 O 1.21581 * 120.00206 * 354.78957 * 9 8 7 11 11 N 1.34775 * 119.99531 * 174.78083 * 9 8 7 12 12 C 1.46504 * 119.99730 * 184.97497 * 11 9 8 13 13 C 1.50698 * 109.46800 * 180.02562 * 12 11 9 14 14 O 1.21286 * 120.00554 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99767 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99977 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00215 * 0.02562 * 16 15 13 18 18 C 1.38959 * 120.00228 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00296 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99676 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47160 * 89.99741 * 20 18 16 22 22 H 1.48498 * 109.47245 * 209.99738 * 20 18 16 23 23 H 1.48504 * 109.47513 * 330.00051 * 20 18 16 24 24 C 1.44575 * 122.71714 * 42.14746 * 8 7 6 25 25 C 1.47093 * 108.51822 * 299.77131 * 3 2 1 26 26 H 1.08997 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46549 * 299.99565 * 1 2 3 28 28 H 1.08997 * 109.47283 * 59.99842 * 1 2 3 29 29 H 1.09010 * 109.47261 * 240.00232 * 2 1 3 30 30 H 1.09003 * 109.47616 * 120.00781 * 2 1 3 31 31 H 1.09000 * 109.48997 * 326.23192 * 5 3 2 32 32 H 1.08999 * 109.49003 * 86.27769 * 5 3 2 33 33 H 1.08997 * 109.36798 * 28.31040 * 6 5 3 34 34 H 1.09001 * 109.36639 * 148.05113 * 6 5 3 35 35 H 1.09004 * 108.94664 * 161.24850 * 7 6 5 36 36 H 1.09001 * 108.94841 * 279.96819 * 7 6 5 37 37 H 0.96998 * 120.00382 * 4.97671 * 11 9 8 38 38 H 1.09004 * 109.46869 * 300.00010 * 12 11 9 39 39 H 1.08996 * 109.47424 * 60.00209 * 12 11 9 40 40 H 0.97003 * 120.00165 * 0.02562 * 15 13 12 41 41 H 0.96991 * 120.00490 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.44649 * 29.29129 * 24 8 7 43 43 H 1.09001 * 109.44721 * 149.23947 * 24 8 7 44 44 H 1.09002 * 109.32589 * 296.20345 * 25 3 2 45 45 H 1.09001 * 109.32617 * 55.67716 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6285 1.9538 0.8702 5 6 3.5603 1.4188 0.1261 6 6 4.0298 2.7051 0.7596 7 6 4.3573 3.7425 -0.3297 8 7 3.3733 3.7236 -1.4297 9 6 3.8201 3.8183 -2.6978 10 8 5.0008 4.0117 -2.9135 11 7 2.9578 3.6984 -3.7267 12 6 3.4573 3.6920 -5.1039 13 6 2.2992 3.5480 -6.0574 14 8 1.1680 3.4599 -5.6289 15 7 2.5205 3.5182 -7.3866 16 6 1.4671 3.3867 -8.2541 17 1 0.4598 3.3074 -7.8724 18 6 1.6952 3.3555 -9.6245 19 7 0.6854 3.2299 -10.4560 20 14 3.4372 3.4919 -10.2846 21 1 4.0282 2.1350 -10.4062 22 1 3.4113 4.1419 -11.6195 23 1 4.2573 4.3072 -9.3529 24 6 1.9501 3.6083 -1.2031 25 6 1.5428 2.1138 -1.2107 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8605 0.5760 0.7487 32 1 4.0057 1.3167 -0.8635 33 1 3.2453 3.0964 1.4073 34 1 4.9241 2.5110 1.3518 35 1 4.3674 4.7358 0.1191 36 1 5.3455 3.5283 -0.7367 37 1 2.0066 3.6163 -3.5553 38 1 3.9792 4.6275 -5.3054 39 1 4.1443 2.8565 -5.2374 40 1 3.4251 3.5891 -7.7295 41 1 0.8446 3.2077 -11.4125 42 1 1.6995 4.0479 -0.2377 43 1 1.4131 4.1348 -1.9921 44 1 1.9651 1.6292 -2.0911 45 1 0.4562 2.0362 -1.2457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358315780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:56 Heat of formation + Delta-G solvation = -94.156630 kcal Electronic energy + Delta-G solvation = -24931.737748 eV Core-core repulsion = 21369.024071 eV Total energy + Delta-G solvation = -3562.713677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76684 -40.37995 -39.23975 -36.34841 -36.08199 -35.51022 -33.90000 -33.69385 -31.47271 -29.57879 -27.80601 -26.31716 -25.81367 -23.84630 -22.23824 -21.48674 -21.06017 -20.73422 -20.28476 -19.12347 -17.71246 -17.33770 -17.07561 -16.78504 -16.22550 -15.93100 -15.92210 -15.60592 -15.26850 -15.08312 -14.92165 -14.46611 -14.21485 -13.99396 -13.93419 -13.71159 -13.60860 -13.24829 -13.06924 -12.96362 -12.67124 -12.45032 -12.24710 -12.00600 -11.86732 -11.76482 -11.58553 -11.39286 -11.30938 -11.20497 -11.04444 -10.65682 -10.34468 -10.25100 -9.47408 -8.45861 -6.07629 1.30892 1.33610 1.43231 1.57408 1.77935 2.09467 2.20105 2.70289 3.04249 3.10468 3.68105 3.81443 3.89312 3.97885 4.04695 4.20012 4.27140 4.37108 4.41469 4.43105 4.49196 4.55960 4.61336 4.74907 4.81580 4.89074 4.94779 5.00734 5.14518 5.18364 5.23267 5.25622 5.29940 5.33355 5.38665 5.48092 5.52257 5.59064 5.71205 5.87302 5.90648 6.48535 6.77530 6.90881 7.27767 7.49446 7.77389 8.70560 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.003495 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.023774 B = 8010.022895 C = 8915.537397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.079 4.079 4 H 0.085 0.915 5 C -0.110 4.110 6 C -0.121 4.121 7 C 0.126 3.874 8 N -0.613 5.613 9 C 0.700 3.300 10 O -0.630 6.630 11 N -0.729 5.729 12 C 0.136 3.864 13 C 0.446 3.554 14 O -0.613 6.613 15 N -0.577 5.577 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.234 1.234 24 C 0.108 3.892 25 C -0.135 4.135 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.392 0.608 41 H 0.281 0.719 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -2.366 24.093 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.097 4.097 4 H 0.103 0.897 5 C -0.147 4.147 6 C -0.159 4.159 7 C 0.004 3.996 8 N -0.348 5.348 9 C 0.401 3.599 10 O -0.512 6.512 11 N -0.388 5.388 12 C 0.007 3.993 13 C 0.234 3.766 14 O -0.498 6.498 15 N -0.217 5.217 16 C -0.460 4.460 17 H 0.082 0.918 18 C -0.207 4.207 19 N -0.565 5.565 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.157 1.157 24 C -0.016 4.016 25 C -0.174 4.174 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.248 0.752 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.227 0.773 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.219 -2.311 24.034 25.201 hybrid contribution -0.011 -0.100 -1.249 1.253 sum 7.208 -2.410 22.785 24.019 Atomic orbital electron populations 1.21878 0.95682 1.01711 1.02096 1.21683 0.96140 0.96476 1.01539 1.20068 0.95248 0.96050 0.98374 0.89680 1.21109 0.95196 0.98230 1.00211 1.21758 1.03298 0.94129 0.96682 1.21855 0.91182 1.00102 0.86416 1.46928 1.07867 1.76381 1.03666 1.16028 0.84309 0.77968 0.81593 1.90847 1.16687 1.58942 1.84753 1.44954 1.11085 1.78626 1.04179 1.20690 0.93699 1.04603 0.80264 1.20456 0.90477 0.82419 0.83280 1.90513 1.25583 1.56273 1.77471 1.41914 1.08880 1.65699 1.05232 1.19032 0.88861 1.50055 0.88043 0.91781 1.26041 1.03622 0.95748 0.95253 1.69771 1.33671 1.48988 1.04070 0.85461 0.77335 0.80158 0.79281 1.18092 1.19754 1.15716 1.21697 0.79459 0.96715 1.03700 1.21439 1.02050 0.95386 0.98515 0.92897 0.91600 0.93103 0.93852 0.91015 0.90697 0.94538 0.89652 0.89019 0.90948 0.91411 0.75161 0.88276 0.88285 0.77265 0.90906 0.87296 0.91548 0.94240 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.52 71.98 0.69 -1.65 16 2 C -0.12 -1.87 5.25 30.59 0.16 -1.71 16 3 C -0.08 -1.19 1.71 -12.78 -0.02 -1.22 16 4 H 0.08 1.00 7.35 -2.39 -0.02 0.98 16 5 C -0.11 -1.73 4.93 29.76 0.15 -1.58 16 6 C -0.12 -1.52 5.71 30.22 0.17 -1.35 16 7 C 0.13 2.39 6.07 86.49 0.53 2.92 16 8 N -0.61 -14.46 2.24 -836.10 -1.87 -16.34 16 9 C 0.70 22.30 8.19 179.05 1.47 23.77 16 10 O -0.63 -23.78 15.66 -3.97 -0.06 -23.84 16 11 N -0.73 -24.14 5.36 -482.30 -2.59 -26.73 16 12 C 0.14 4.73 6.16 85.63 0.53 5.26 16 13 C 0.45 19.88 7.85 87.66 0.69 20.57 16 14 O -0.61 -31.87 15.24 -3.05 -0.05 -31.91 16 15 N -0.58 -26.93 5.09 -306.98 -1.56 -28.49 16 16 C -0.33 -18.90 10.16 84.04 0.85 -18.04 16 17 H 0.06 4.31 7.39 -2.91 -0.02 4.28 16 18 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 19 N -0.93 -54.48 13.96 21.67 0.30 -54.18 16 20 Si 0.96 38.44 27.74 68.60 1.90 40.34 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 24 C 0.11 2.06 5.08 87.39 0.44 2.51 16 25 C -0.14 -2.60 4.69 29.41 0.14 -2.46 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.86 6.27 -2.39 -0.01 0.85 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.93 7.95 -2.39 -0.02 0.92 16 31 H 0.07 1.00 7.72 -2.39 -0.02 0.98 16 32 H 0.04 0.80 7.48 -2.39 -0.02 0.79 16 33 H 0.08 0.79 7.32 -2.39 -0.02 0.77 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.60 7.01 -2.39 -0.02 1.58 16 37 H 0.41 13.63 5.09 -92.71 -0.47 13.15 16 38 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.39 15.43 5.76 -92.71 -0.53 14.89 16 41 H 0.28 15.13 8.31 -92.72 -0.77 14.36 16 42 H 0.11 1.46 8.06 -2.39 -0.02 1.44 16 43 H 0.07 1.44 6.39 -2.39 -0.02 1.43 16 44 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 1.56 5.97 -2.39 -0.01 1.55 16 Total: -1.00 -73.33 350.07 2.27 -71.06 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.06 Total: 42.96 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 6.25 Total: 27.13 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -5.72 Total: -125.73 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -0.11 Total: -55.76 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.90 Total: 40.34 kcal Total: -73.33 2.27 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.097 kcal (2) G-P(sol) polarization free energy of solvation -73.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds