Wall clock time and date at job start Tue Mar 31 2020 03:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53000 * 109.46892 * 2 1
4 4 C 1.53003 * 109.46859 * 119.99969 * 2 1 3
5 5 N 1.46497 * 109.46766 * 240.00362 * 2 1 3
6 6 C 1.34776 * 120.00310 * 59.99849 * 5 2 1
7 7 O 1.21582 * 119.99817 * 355.08031 * 6 5 2
8 8 N 1.34777 * 119.99536 * 175.07287 * 6 5 2
9 9 C 1.46937 * 120.62559 * 184.94960 * 8 6 5
10 10 C 1.52762 * 109.00871 * 233.58662 * 9 8 6
11 11 C 1.53040 * 109.38174 * 305.59096 * 10 9 8
12 12 N 1.46501 * 109.44437 * 181.25288 * 11 10 9
13 13 C 1.34778 * 119.99707 * 84.94276 * 12 11 10
14 14 O 1.21682 * 120.00142 * 359.97438 * 13 12 11
15 15 C 1.46379 * 119.99537 * 179.97438 * 13 12 11
16 16 H 1.07991 * 120.00279 * 359.97438 * 15 13 12
17 17 C 1.40053 * 119.99616 * 179.97438 * 15 13 12
18 18 N 1.30666 * 120.00123 * 359.97438 * 17 15 13
19 19 Si 1.86803 * 119.99973 * 179.97438 * 17 15 13
20 20 H 1.48503 * 109.46979 * 359.97438 * 19 17 15
21 21 H 1.48503 * 109.47099 * 119.99327 * 19 17 15
22 22 H 1.48495 * 109.47062 * 239.99844 * 19 17 15
23 23 C 1.53033 * 109.54155 * 61.24186 * 11 10 9
24 24 C 1.46926 * 120.63489 * 5.23478 * 8 6 5
25 25 H 1.09002 * 109.47290 * 59.99788 * 1 2 3
26 26 H 1.08999 * 109.47039 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.47188 * 299.99844 * 1 2 3
28 28 H 1.09001 * 109.47077 * 60.00088 * 3 2 1
29 29 H 1.09004 * 109.46786 * 179.97438 * 3 2 1
30 30 H 1.09002 * 109.47327 * 300.00190 * 3 2 1
31 31 H 1.08999 * 109.46971 * 60.00355 * 4 2 1
32 32 H 1.08999 * 109.46389 * 179.97438 * 4 2 1
33 33 H 1.08989 * 109.47316 * 299.99758 * 4 2 1
34 34 H 0.97001 * 119.99694 * 239.99653 * 5 2 1
35 35 H 1.09003 * 109.58236 * 353.42216 * 9 8 6
36 36 H 1.09005 * 109.58214 * 113.84738 * 9 8 6
37 37 H 1.08991 * 109.56299 * 185.55271 * 10 9 8
38 38 H 1.09003 * 109.35662 * 65.50018 * 10 9 8
39 39 H 1.08998 * 109.46062 * 301.21788 * 11 10 9
40 40 H 0.96998 * 120.00196 * 264.93195 * 12 11 10
41 41 H 0.97003 * 120.00441 * 180.02562 * 18 17 15
42 42 H 1.08995 * 109.50368 * 178.68610 * 23 11 10
43 43 H 1.08998 * 109.52696 * 58.59781 * 23 11 10
44 44 H 1.09002 * 109.58516 * 246.14971 * 24 8 6
45 45 H 1.08993 * 109.58765 * 6.43429 * 24 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 2.0183 -0.6905 -1.1962
6 6 1.6927 -0.2301 -2.4203
7 8 0.9220 0.7035 -2.5334
8 7 2.2215 -0.8044 -3.5189
9 6 1.9623 -0.2469 -4.8534
10 6 1.4145 -1.3508 -5.7561
11 6 2.3787 -2.5392 -5.7473
12 7 1.8696 -3.5869 -6.6359
13 6 2.1399 -3.5412 -7.9555
14 8 2.8063 -2.6296 -8.4089
15 6 1.6317 -4.5883 -8.8433
16 1 1.0406 -5.3975 -8.4408
17 6 1.9121 -4.5406 -10.2146
18 7 2.6269 -3.5612 -10.7016
19 14 1.2642 -5.8771 -11.3475
20 1 0.4890 -6.8650 -10.5548
21 1 0.3846 -5.2691 -12.3780
22 1 2.4043 -6.5600 -12.0100
23 6 2.4983 -3.0909 -4.3249
24 6 3.0630 -2.0034 -3.4054
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5138 0.8900
28 1 1.6767 1.9563 0.8900
29 1 3.1300 1.4425 0.0005
30 1 1.6766 1.9564 -0.8900
31 1 1.6767 -1.7489 1.2492
32 1 3.1300 -0.7216 1.2490
33 1 1.6767 -0.2075 2.1392
34 1 2.5760 -1.4792 -1.1072
35 1 1.2309 0.5578 -4.7775
36 1 2.8907 0.1389 -5.2749
37 1 1.3117 -0.9731 -6.7733
38 1 0.4402 -1.6700 -5.3858
39 1 3.3594 -2.2137 -6.0942
40 1 1.3382 -4.3134 -6.2745
41 1 2.8208 -3.5279 -11.6515
42 1 3.1670 -3.9517 -4.3235
43 1 1.5141 -3.3942 -3.9678
44 1 4.0829 -1.7639 -3.7065
45 1 3.0597 -2.3559 -2.3741
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408321563.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:58
Heat of formation + Delta-G solvation = -72.994916 kcal
Electronic energy + Delta-G solvation = -24851.909264 eV
Core-core repulsion = 21290.113228 eV
Total energy + Delta-G solvation = -3561.796037 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.64 seconds
Orbital eigenvalues (eV)
-40.61435 -38.48345 -37.01858 -36.03881 -33.76034 -32.45958 -32.06845 -30.68010
-29.89926 -27.60964 -27.35910 -26.39331 -24.30743 -23.17321 -21.48308 -20.10631
-19.50216 -19.31030 -18.23229 -17.04962 -16.15295 -15.51919 -15.34383 -15.15914
-14.72727 -14.42140 -14.35334 -14.08205 -13.85348 -13.52455 -13.36246 -12.86515
-12.70641 -12.50318 -12.43209 -12.25400 -12.09590 -11.88246 -11.76574 -11.57631
-11.30479 -11.22685 -11.08291 -11.06668 -10.99423 -10.49665 -10.38440 -10.23413
-10.12101 -9.72237 -9.17652 -8.86855 -8.47648 -7.60957 -7.51552 -6.19246
-4.64721 2.64769 3.12260 3.20629 3.24119 3.25072 3.79180 4.09553
4.56748 4.57875 4.69008 4.72947 4.78771 4.88236 5.14636 5.23152
5.27700 5.40405 5.42364 5.49782 5.57944 5.60970 5.62438 5.66828
5.72212 5.78778 5.82624 5.84702 5.98112 6.03074 6.12205 6.21447
6.28131 6.32312 6.44467 6.57090 6.74831 6.83515 6.99738 7.42871
7.92423 7.97801 8.10296 8.32948 8.65247 9.02225 9.53114 10.59385
10.78216
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.040791 B = 0.002808 C = 0.002763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.260284 B = 9969.990001 C =10129.959384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.185 3.815
3 C -0.162 4.162
4 C -0.154 4.154
5 N -0.744 5.744
6 C 0.710 3.290
7 O -0.589 6.589
8 N -0.626 5.626
9 C 0.132 3.868
10 C -0.142 4.142
11 C 0.158 3.842
12 N -0.763 5.763
13 C 0.555 3.445
14 O -0.580 6.580
15 C -0.546 4.546
16 H 0.067 0.933
17 C 0.087 3.913
18 N -0.768 5.768
19 Si 0.906 3.094
20 H -0.264 1.264
21 H -0.276 1.276
22 H -0.276 1.276
23 C -0.140 4.140
24 C 0.118 3.882
25 H 0.084 0.916
26 H 0.051 0.949
27 H 0.058 0.942
28 H 0.060 0.940
29 H 0.052 0.948
30 H 0.078 0.922
31 H 0.061 0.939
32 H 0.060 0.940
33 H 0.073 0.927
34 H 0.393 0.607
35 H 0.090 0.910
36 H 0.066 0.934
37 H 0.083 0.917
38 H 0.058 0.942
39 H 0.076 0.924
40 H 0.379 0.621
41 H 0.267 0.733
42 H 0.078 0.922
43 H 0.066 0.934
44 H 0.071 0.929
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.092 3.096 21.761 21.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.099 3.901
3 C -0.220 4.220
4 C -0.212 4.212
5 N -0.402 5.402
6 C 0.412 3.588
7 O -0.467 6.467
8 N -0.363 5.363
9 C 0.009 3.991
10 C -0.182 4.182
11 C 0.052 3.948
12 N -0.417 5.417
13 C 0.359 3.641
14 O -0.462 6.462
15 C -0.583 4.583
16 H 0.085 0.915
17 C -0.132 4.132
18 N -0.396 5.396
19 Si 0.731 3.269
20 H -0.188 1.188
21 H -0.202 1.202
22 H -0.202 1.202
23 C -0.179 4.179
24 C -0.007 4.007
25 H 0.103 0.897
26 H 0.070 0.930
27 H 0.077 0.923
28 H 0.079 0.921
29 H 0.071 0.929
30 H 0.097 0.903
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.091 0.909
34 H 0.229 0.771
35 H 0.109 0.891
36 H 0.084 0.916
37 H 0.101 0.899
38 H 0.077 0.923
39 H 0.094 0.906
40 H 0.210 0.790
41 H 0.078 0.922
42 H 0.096 0.904
43 H 0.085 0.915
44 H 0.089 0.911
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -0.052 4.562 21.170 21.656
hybrid contribution -0.282 -1.581 -0.350 1.644
sum -0.334 2.981 20.819 21.034
Atomic orbital electron populations
1.22282 0.94353 1.02101 1.03582 1.20132 0.94338 0.92286 0.83327
1.22223 1.00726 0.95731 1.03358 1.22080 1.01499 1.00791 0.96828
1.45510 1.57166 1.33232 1.04285 1.15819 0.80435 0.82247 0.80285
1.90825 1.38852 1.31610 1.85451 1.47409 1.52910 1.29917 1.06098
1.21442 1.01278 0.96671 0.79699 1.22287 0.99375 0.96243 1.00264
1.20399 0.97812 0.88620 0.88004 1.46199 1.59477 1.27397 1.08634
1.18210 0.80010 0.86511 0.79325 1.90594 1.42995 1.37986 1.74667
1.20927 1.35545 1.09769 0.92040 0.91499 1.25702 0.93377 0.95566
0.98565 1.70024 1.28440 1.27850 1.13332 0.86341 0.79099 0.81271
0.80180 1.18828 1.20174 1.20193 1.22201 1.01846 0.97956 0.95915
1.21574 0.94598 0.85193 0.99286 0.89691 0.93003 0.92342 0.92119
0.92933 0.90333 0.92015 0.92048 0.90852 0.77070 0.89115 0.91609
0.89853 0.92273 0.90553 0.78999 0.92186 0.90370 0.91550 0.91065
0.90942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.68 8.40 37.16 0.31 -1.37 16
2 C 0.19 1.72 1.06 -131.82 -0.14 1.58 16
3 C -0.16 -1.59 8.40 37.16 0.31 -1.27 16
4 C -0.15 -0.97 8.59 37.16 0.32 -0.65 16
5 N -0.74 -7.67 5.01 -52.41 -0.26 -7.93 16
6 C 0.71 9.85 7.70 -86.92 -0.67 9.18 16
7 O -0.59 -9.97 11.99 5.29 0.06 -9.91 16
8 N -0.63 -8.39 2.98 -178.75 -0.53 -8.92 16
9 C 0.13 2.02 6.41 -3.93 -0.03 1.99 16
10 C -0.14 -2.48 5.63 -26.83 -0.15 -2.63 16
11 C 0.16 2.85 2.42 -67.89 -0.16 2.68 16
12 N -0.76 -16.38 5.07 -55.18 -0.28 -16.66 16
13 C 0.56 15.38 7.71 -12.98 -0.10 15.28 16
14 O -0.58 -18.25 14.68 5.20 0.08 -18.17 16
15 C -0.55 -15.22 9.54 -35.63 -0.34 -15.56 16
16 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16
17 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16
18 N -0.77 -22.85 11.83 55.55 0.66 -22.19 16
19 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16
20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16
21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
23 C -0.14 -1.82 5.55 -26.61 -0.15 -1.97 16
24 C 0.12 1.28 6.39 -3.71 -0.02 1.26 16
25 H 0.08 1.14 6.00 -51.93 -0.31 0.82 16
26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16
30 H 0.08 1.00 6.34 -51.93 -0.33 0.67 16
31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
33 H 0.07 0.39 8.14 -51.94 -0.42 -0.03 16
34 H 0.39 3.18 5.96 -40.82 -0.24 2.93 16
35 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16
36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
37 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16
38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
39 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16
40 H 0.38 7.23 8.58 -40.82 -0.35 6.88 16
41 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16
42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
45 H 0.07 0.58 5.64 -51.93 -0.29 0.29 16
LS Contribution 354.84 15.07 5.35 5.35
Total: -1.00 -34.93 354.84 -8.19 -43.12
By element:
Atomic # 1 Polarization: 16.79 SS G_CDS: -7.33 Total: 9.47 kcal
Atomic # 6 Polarization: 11.76 SS G_CDS: -0.91 Total: 10.85 kcal
Atomic # 7 Polarization: -55.29 SS G_CDS: -0.42 Total: -55.71 kcal
Atomic # 8 Polarization: -28.22 SS G_CDS: 0.14 Total: -28.08 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -34.93 -8.19 -43.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408321563.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.874 kcal
(2) G-P(sol) polarization free energy of solvation -34.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.64 seconds