Wall clock time and date at job start Tue Mar 31 2020 03:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53000 * 109.46892 * 2 1
4 4 C 1.53003 * 109.46859 * 119.99969 * 2 1 3
5 5 N 1.46497 * 109.46766 * 240.00362 * 2 1 3
6 6 C 1.34776 * 120.00310 * 59.99849 * 5 2 1
7 7 O 1.21582 * 119.99817 * 355.08031 * 6 5 2
8 8 N 1.34777 * 119.99536 * 175.07287 * 6 5 2
9 9 C 1.46937 * 120.62559 * 184.94960 * 8 6 5
10 10 C 1.52762 * 109.00871 * 233.58662 * 9 8 6
11 11 C 1.53040 * 109.38174 * 305.59096 * 10 9 8
12 12 N 1.46501 * 109.44437 * 181.25288 * 11 10 9
13 13 C 1.34778 * 119.99707 * 84.94276 * 12 11 10
14 14 O 1.21682 * 120.00142 * 359.97438 * 13 12 11
15 15 C 1.46379 * 119.99537 * 179.97438 * 13 12 11
16 16 H 1.07991 * 120.00279 * 359.97438 * 15 13 12
17 17 C 1.40053 * 119.99616 * 179.97438 * 15 13 12
18 18 N 1.30666 * 120.00123 * 359.97438 * 17 15 13
19 19 Si 1.86803 * 119.99973 * 179.97438 * 17 15 13
20 20 H 1.48503 * 109.46979 * 359.97438 * 19 17 15
21 21 H 1.48503 * 109.47099 * 119.99327 * 19 17 15
22 22 H 1.48495 * 109.47062 * 239.99844 * 19 17 15
23 23 C 1.53033 * 109.54155 * 61.24186 * 11 10 9
24 24 C 1.46926 * 120.63489 * 5.23478 * 8 6 5
25 25 H 1.09002 * 109.47290 * 59.99788 * 1 2 3
26 26 H 1.08999 * 109.47039 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.47188 * 299.99844 * 1 2 3
28 28 H 1.09001 * 109.47077 * 60.00088 * 3 2 1
29 29 H 1.09004 * 109.46786 * 179.97438 * 3 2 1
30 30 H 1.09002 * 109.47327 * 300.00190 * 3 2 1
31 31 H 1.08999 * 109.46971 * 60.00355 * 4 2 1
32 32 H 1.08999 * 109.46389 * 179.97438 * 4 2 1
33 33 H 1.08989 * 109.47316 * 299.99758 * 4 2 1
34 34 H 0.97001 * 119.99694 * 239.99653 * 5 2 1
35 35 H 1.09003 * 109.58236 * 353.42216 * 9 8 6
36 36 H 1.09005 * 109.58214 * 113.84738 * 9 8 6
37 37 H 1.08991 * 109.56299 * 185.55271 * 10 9 8
38 38 H 1.09003 * 109.35662 * 65.50018 * 10 9 8
39 39 H 1.08998 * 109.46062 * 301.21788 * 11 10 9
40 40 H 0.96998 * 120.00196 * 264.93195 * 12 11 10
41 41 H 0.97003 * 120.00441 * 180.02562 * 18 17 15
42 42 H 1.08995 * 109.50368 * 178.68610 * 23 11 10
43 43 H 1.08998 * 109.52696 * 58.59781 * 23 11 10
44 44 H 1.09002 * 109.58516 * 246.14971 * 24 8 6
45 45 H 1.08993 * 109.58765 * 6.43429 * 24 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 2.0183 -0.6905 -1.1962
6 6 1.6927 -0.2301 -2.4203
7 8 0.9220 0.7035 -2.5334
8 7 2.2215 -0.8044 -3.5189
9 6 1.9623 -0.2469 -4.8534
10 6 1.4145 -1.3508 -5.7561
11 6 2.3787 -2.5392 -5.7473
12 7 1.8696 -3.5869 -6.6359
13 6 2.1399 -3.5412 -7.9555
14 8 2.8063 -2.6296 -8.4089
15 6 1.6317 -4.5883 -8.8433
16 1 1.0406 -5.3975 -8.4408
17 6 1.9121 -4.5406 -10.2146
18 7 2.6269 -3.5612 -10.7016
19 14 1.2642 -5.8771 -11.3475
20 1 0.4890 -6.8650 -10.5548
21 1 0.3846 -5.2691 -12.3780
22 1 2.4043 -6.5600 -12.0100
23 6 2.4983 -3.0909 -4.3249
24 6 3.0630 -2.0034 -3.4054
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5138 0.8900
28 1 1.6767 1.9563 0.8900
29 1 3.1300 1.4425 0.0005
30 1 1.6766 1.9564 -0.8900
31 1 1.6767 -1.7489 1.2492
32 1 3.1300 -0.7216 1.2490
33 1 1.6767 -0.2075 2.1392
34 1 2.5760 -1.4792 -1.1072
35 1 1.2309 0.5578 -4.7775
36 1 2.8907 0.1389 -5.2749
37 1 1.3117 -0.9731 -6.7733
38 1 0.4402 -1.6700 -5.3858
39 1 3.3594 -2.2137 -6.0942
40 1 1.3382 -4.3134 -6.2745
41 1 2.8208 -3.5279 -11.6515
42 1 3.1670 -3.9517 -4.3235
43 1 1.5141 -3.3942 -3.9678
44 1 4.0829 -1.7639 -3.7065
45 1 3.0597 -2.3559 -2.3741
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000408321563.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:58
Heat of formation + Delta-G solvation = -98.882175 kcal
Electronic energy + Delta-G solvation = -24853.031820 eV
Core-core repulsion = 21290.113228 eV
Total energy + Delta-G solvation = -3562.918592 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.67556 -39.94222 -38.51587 -37.23830 -35.34441 -34.48445 -33.31703 -31.92262
-31.28516 -28.38902 -28.19411 -28.14038 -25.68160 -24.38111 -22.72878 -21.60911
-21.01743 -20.30849 -19.47350 -18.82859 -17.43305 -17.10815 -16.60571 -16.48636
-16.06836 -15.83192 -15.50272 -15.14707 -15.02371 -14.75989 -14.54348 -14.41873
-14.04586 -13.93379 -13.51296 -13.25653 -13.05029 -12.98007 -12.91098 -12.80457
-12.68948 -12.59844 -12.47858 -12.25552 -12.06229 -11.99453 -11.98111 -11.78859
-11.58563 -10.93837 -10.81574 -10.15831 -9.85303 -9.51368 -9.41547 -8.27625
-6.83744 1.39965 1.40369 1.57801 1.63925 2.16379 2.25135 2.49178
2.89344 3.10409 3.61268 3.72658 3.89036 3.99141 4.06184 4.07741
4.17398 4.21293 4.31383 4.46225 4.51945 4.72840 4.73317 4.76200
4.77267 4.81824 4.87392 4.91011 4.96685 5.01403 5.05619 5.13504
5.25948 5.29086 5.33344 5.37896 5.46280 5.59263 5.73959 5.91001
5.99177 6.26765 6.33429 6.88722 7.03720 7.58879 7.61922 8.52441
8.69984
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.040791 B = 0.002808 C = 0.002763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.260284 B = 9969.990001 C =10129.959384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.179 3.821
3 C -0.159 4.159
4 C -0.146 4.146
5 N -0.728 5.728
6 C 0.705 3.295
7 O -0.624 6.624
8 N -0.627 5.627
9 C 0.144 3.856
10 C -0.130 4.130
11 C 0.155 3.845
12 N -0.751 5.751
13 C 0.541 3.459
14 O -0.629 6.629
15 C -0.574 4.574
16 H 0.085 0.915
17 C 0.028 3.972
18 N -0.822 5.822
19 Si 0.996 3.004
20 H -0.247 1.247
21 H -0.271 1.271
22 H -0.268 1.268
23 C -0.127 4.127
24 C 0.118 3.882
25 H 0.047 0.953
26 H 0.054 0.946
27 H 0.076 0.924
28 H 0.078 0.922
29 H 0.058 0.942
30 H 0.042 0.958
31 H 0.070 0.930
32 H 0.072 0.928
33 H 0.086 0.914
34 H 0.407 0.593
35 H 0.080 0.920
36 H 0.065 0.935
37 H 0.041 0.959
38 H 0.060 0.940
39 H 0.047 0.953
40 H 0.393 0.607
41 H 0.273 0.727
42 H 0.095 0.905
43 H 0.076 0.924
44 H 0.079 0.921
45 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.143 0.823 24.355 24.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.094 3.906
3 C -0.217 4.217
4 C -0.204 4.204
5 N -0.387 5.387
6 C 0.407 3.593
7 O -0.505 6.505
8 N -0.364 5.364
9 C 0.019 3.981
10 C -0.170 4.170
11 C 0.049 3.951
12 N -0.404 5.404
13 C 0.345 3.655
14 O -0.516 6.516
15 C -0.611 4.611
16 H 0.104 0.896
17 C -0.187 4.187
18 N -0.452 5.452
19 Si 0.815 3.185
20 H -0.170 1.170
21 H -0.196 1.196
22 H -0.193 1.193
23 C -0.165 4.165
24 C -0.004 4.004
25 H 0.066 0.934
26 H 0.073 0.927
27 H 0.094 0.906
28 H 0.097 0.903
29 H 0.077 0.923
30 H 0.061 0.939
31 H 0.089 0.911
32 H 0.091 0.909
33 H 0.105 0.895
34 H 0.246 0.754
35 H 0.098 0.902
36 H 0.083 0.917
37 H 0.060 0.940
38 H 0.079 0.921
39 H 0.065 0.935
40 H 0.227 0.773
41 H 0.083 0.917
42 H 0.113 0.887
43 H 0.095 0.905
44 H 0.098 0.902
45 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -0.102 2.247 23.859 23.964
hybrid contribution -0.284 -0.806 -1.082 1.379
sum -0.385 1.440 22.777 22.825
Atomic orbital electron populations
1.22232 0.95214 1.01940 1.02640 1.20346 0.93774 0.92405 0.84110
1.22181 1.01017 0.96063 1.02461 1.22034 1.02190 1.00953 0.95196
1.45439 1.56590 1.33363 1.03278 1.16018 0.80150 0.81970 0.81171
1.90821 1.40391 1.33219 1.86048 1.47368 1.53245 1.30698 1.05089
1.21123 1.00787 0.95476 0.80667 1.22099 0.99572 0.96854 0.98481
1.20577 0.96005 0.88069 0.90404 1.45878 1.58785 1.28355 1.07378
1.18541 0.79613 0.86064 0.81331 1.90552 1.45123 1.39679 1.76234
1.21472 1.36089 1.10465 0.93063 0.89647 1.26947 0.93046 0.98239
1.00432 1.70189 1.30206 1.30586 1.14189 0.85000 0.78571 0.77541
0.77341 1.17032 1.19608 1.19302 1.22105 1.03144 0.98978 0.92298
1.21769 0.94192 0.83390 1.01091 0.93365 0.92694 0.90551 0.90344
0.92325 0.93904 0.91059 0.90906 0.89493 0.75444 0.90177 0.91651
0.94017 0.92148 0.93468 0.77331 0.91678 0.88673 0.90514 0.90242
0.86825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.07 8.40 71.98 0.60 -2.47 16
2 C 0.18 2.90 1.06 3.61 0.00 2.90 16
3 C -0.16 -2.88 8.40 71.98 0.60 -2.28 16
4 C -0.15 -1.25 8.59 71.98 0.62 -0.63 16
5 N -0.73 -13.21 5.01 -438.01 -2.20 -15.41 16
6 C 0.71 18.89 7.70 179.05 1.38 20.27 16
7 O -0.62 -21.54 11.99 -3.97 -0.05 -21.59 16
8 N -0.63 -16.19 2.98 -837.70 -2.50 -18.69 16
9 C 0.14 4.54 6.41 86.22 0.55 5.10 16
10 C -0.13 -4.76 5.63 30.53 0.17 -4.59 16
11 C 0.16 5.66 2.42 45.02 0.11 5.77 16
12 N -0.75 -32.67 5.07 -446.70 -2.27 -34.93 16
13 C 0.54 30.94 7.71 86.36 0.67 31.60 16
14 O -0.63 -41.66 14.68 -4.29 -0.06 -41.73 16
15 C -0.57 -32.39 9.54 24.83 0.24 -32.15 16
16 H 0.09 4.33 7.85 -2.91 -0.02 4.31 16
17 C 0.03 1.58 5.50 85.31 0.47 2.05 16
18 N -0.82 -50.48 11.83 21.84 0.26 -50.22 16
19 Si 1.00 41.05 29.56 68.60 2.03 43.07 16
20 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16
21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16
22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16
23 C -0.13 -3.01 5.55 30.67 0.17 -2.84 16
24 C 0.12 2.27 6.39 86.37 0.55 2.82 16
25 H 0.05 1.30 6.00 -2.39 -0.01 1.28 16
26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
28 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16
29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.04 1.10 6.34 -2.39 -0.02 1.08 16
31 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16
32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16
34 H 0.41 4.94 5.96 -92.71 -0.55 4.39 16
35 H 0.08 2.71 6.99 -2.39 -0.02 2.69 16
36 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16
37 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16
38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
39 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16
40 H 0.39 14.74 8.58 -92.71 -0.80 13.95 16
41 H 0.27 15.19 8.29 -92.71 -0.77 14.43 16
42 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
45 H 0.11 1.29 5.64 -2.39 -0.01 1.27 16
Total: -1.00 -81.51 354.84 1.01 -80.50
By element:
Atomic # 1 Polarization: 33.79 SS G_CDS: -0.35 Total: 33.44 kcal
Atomic # 6 Polarization: 19.41 SS G_CDS: 6.14 Total: 25.55 kcal
Atomic # 7 Polarization: -112.55 SS G_CDS: -6.70 Total: -119.25 kcal
Atomic # 8 Polarization: -63.20 SS G_CDS: -0.11 Total: -63.31 kcal
Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal
Total: -81.51 1.01 -80.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408321563.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.378 kcal
(2) G-P(sol) polarization free energy of solvation -81.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.882 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds