Wall clock time and date at job start Tue Mar 31 2020 03:52:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53002 * 109.47077 * 2 1
4 4 H 1.09001 * 109.46902 * 55.00178 * 3 2 1
5 5 N 1.46499 * 109.47412 * 295.00113 * 3 2 1
6 6 C 1.34770 * 119.99881 * 108.13129 * 5 3 2
7 7 O 1.21584 * 120.00433 * 0.02562 * 6 5 3
8 8 N 1.34781 * 119.99936 * 179.97438 * 6 5 3
9 9 C 1.46496 * 119.99937 * 180.02562 * 8 6 5
10 10 C 1.50700 * 109.47057 * 180.02562 * 9 8 6
11 11 O 1.21293 * 119.99795 * 0.02562 * 10 9 8
12 12 N 1.34781 * 120.00263 * 179.97438 * 10 9 8
13 13 C 1.37097 * 120.00048 * 180.02562 * 12 10 9
14 14 H 1.08000 * 120.00127 * 359.97438 * 13 12 10
15 15 C 1.38949 * 119.99779 * 179.97438 * 13 12 10
16 16 N 1.31409 * 119.99708 * 179.72045 * 15 13 12
17 17 Si 1.86796 * 120.00122 * 0.02562 * 15 13 12
18 18 H 1.48491 * 109.47445 * 89.99460 * 17 15 13
19 19 H 1.48501 * 109.46942 * 209.99656 * 17 15 13
20 20 H 1.48502 * 109.47059 * 329.99411 * 17 15 13
21 21 C 1.52994 * 109.46750 * 174.99752 * 3 2 1
22 22 H 1.09003 * 115.55919 * 331.46060 * 21 3 2
23 23 C 1.53007 * 117.49528 * 117.16454 * 21 3 2
24 24 C 1.53003 * 117.49916 * 185.78727 * 21 3 2
25 25 C 1.52997 * 117.49632 * 359.97438 * 24 21 3
26 26 C 1.53000 * 117.50151 * 145.02492 * 24 21 3
27 27 H 1.09002 * 109.47244 * 179.97438 * 1 2 3
28 28 H 1.08996 * 109.46920 * 300.00059 * 1 2 3
29 29 H 1.09005 * 109.46944 * 59.99660 * 1 2 3
30 30 H 1.09004 * 109.46992 * 240.00283 * 2 1 3
31 31 H 1.08991 * 109.46937 * 120.00394 * 2 1 3
32 32 H 0.96995 * 119.99695 * 288.13474 * 5 3 2
33 33 H 0.96995 * 119.99640 * 0.02562 * 8 6 5
34 34 H 1.08998 * 109.47569 * 60.00094 * 9 8 6
35 35 H 1.08999 * 109.47054 * 299.99659 * 9 8 6
36 36 H 0.96997 * 119.99600 * 0.02562 * 12 10 9
37 37 H 0.97000 * 119.99826 * 180.02562 * 16 15 13
38 38 H 1.09005 * 117.49759 * 214.97734 * 23 21 3
39 39 H 1.08999 * 117.49944 * 0.02562 * 23 21 3
40 40 H 1.09004 * 109.47021 * 60.00384 * 25 24 21
41 41 H 1.09004 * 109.47165 * 179.97438 * 25 24 21
42 42 H 1.09001 * 109.47549 * 300.00194 * 25 24 21
43 43 H 1.08999 * 109.47197 * 59.99826 * 26 24 21
44 44 H 1.09001 * 109.46992 * 180.02562 * 26 24 21
45 45 H 1.09006 * 109.46690 * 299.99952 * 26 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 7 1.6525 2.0976 -1.2518
6 6 0.6888 3.0397 -1.2490
7 8 0.1414 3.3465 -0.2076
8 7 0.3326 3.6428 -2.4005
9 6 -0.7145 4.6673 -2.3974
10 6 -0.9212 5.1785 -3.7999
11 8 -0.2593 4.7306 -4.7123
12 7 -1.8423 6.1326 -4.0406
13 6 -2.0307 6.5972 -5.3165
14 1 -1.4408 6.1991 -6.1289
15 6 -2.9807 7.5804 -5.5646
16 7 -3.1575 8.0297 -6.7868
17 14 -4.0005 8.2696 -4.1596
18 1 -3.3038 9.4411 -3.5703
19 1 -5.3292 8.6902 -4.6722
20 1 -4.1794 7.2253 -3.1191
21 6 3.5648 1.4443 0.1258
22 1 3.9938 0.5950 0.6576
23 6 4.3688 2.0294 -1.0371
24 6 4.2593 2.7987 0.2810
25 6 3.3759 4.0477 0.2978
26 6 5.5029 2.8572 1.1703
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 2.0894 1.8531 -2.0825
33 1 0.7696 3.3983 -3.2313
34 1 -0.4145 5.4916 -1.7505
35 1 -1.6444 4.2352 -2.0279
36 1 -2.3719 6.4904 -3.3109
37 1 -3.8204 8.7164 -6.9600
38 1 5.3269 1.5649 -1.2705
39 1 3.8115 2.4134 -1.8915
40 1 2.6754 3.9861 1.1308
41 1 4.0008 4.9333 0.4139
42 1 2.8219 4.1137 -0.6386
43 1 6.2651 2.1865 0.7737
44 1 5.8890 3.8764 1.1883
45 1 5.2403 2.5505 2.1828
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000416743811.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:10
Heat of formation + Delta-G solvation = -49.332605 kcal
Electronic energy + Delta-G solvation = -24616.567519 eV
Core-core repulsion = 21055.797558 eV
Total energy + Delta-G solvation = -3560.769962 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.53741 -38.92584 -38.11430 -35.32567 -34.42972 -33.71403 -32.22846 -31.77200
-29.64704 -27.95698 -27.51898 -26.41887 -24.25472 -22.24430 -21.23648 -20.13097
-19.62625 -19.20357 -18.79743 -17.99172 -16.27212 -15.96978 -15.61882 -15.23175
-15.00192 -14.71753 -14.55135 -14.11056 -13.95618 -13.90649 -13.61712 -13.27086
-13.12652 -12.62708 -12.48403 -12.36149 -12.23769 -12.15971 -12.10710 -11.95218
-11.46435 -11.40586 -11.24304 -11.19277 -10.98934 -10.63914 -10.26154 -10.06154
-9.89559 -9.69495 -9.68296 -9.11379 -8.76101 -8.66088 -8.30064 -6.40623
-3.93142 2.77423 3.00056 3.04709 3.12862 3.35520 3.50584 3.58655
4.03813 4.26718 4.34419 4.57283 4.62633 4.66558 4.90787 4.94465
5.01311 5.08388 5.14608 5.36693 5.45997 5.47109 5.59986 5.64197
5.67237 5.71840 5.75051 5.80829 5.85109 5.85433 5.86487 5.89658
5.93008 6.04415 6.05824 6.24344 6.28640 6.59779 6.66820 7.08256
7.45462 8.00763 8.20356 8.44902 8.77355 8.82145 9.30273 9.64152
10.71631
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.022171 B = 0.003129 C = 0.002996
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1262.601278 B = 8946.598753 C = 9344.400384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.129 4.129
3 C 0.189 3.811
4 H 0.105 0.895
5 N -0.740 5.740
6 C 0.707 3.293
7 O -0.595 6.595
8 N -0.727 5.727
9 C 0.127 3.873
10 C 0.439 3.561
11 O -0.579 6.579
12 N -0.577 5.577
13 C -0.310 4.310
14 H 0.121 0.879
15 C 0.045 3.955
16 N -0.875 5.875
17 Si 0.879 3.121
18 H -0.269 1.269
19 H -0.275 1.275
20 H -0.267 1.267
21 C -0.160 4.160
22 H 0.111 0.889
23 C -0.170 4.170
24 C -0.119 4.119
25 C -0.114 4.114
26 C -0.114 4.114
27 H 0.049 0.951
28 H 0.056 0.944
29 H 0.054 0.946
30 H 0.063 0.937
31 H 0.070 0.930
32 H 0.395 0.605
33 H 0.407 0.593
34 H 0.082 0.918
35 H 0.082 0.918
36 H 0.374 0.626
37 H 0.275 0.725
38 H 0.092 0.908
39 H 0.097 0.903
40 H 0.061 0.939
41 H 0.054 0.946
42 H 0.061 0.939
43 H 0.054 0.946
44 H 0.060 0.940
45 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.463 -13.047 16.166 24.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.168 4.168
3 C 0.083 3.917
4 H 0.122 0.878
5 N -0.396 5.396
6 C 0.407 3.593
7 O -0.474 6.474
8 N -0.385 5.385
9 C -0.001 4.001
10 C 0.224 3.776
11 O -0.464 6.464
12 N -0.214 5.214
13 C -0.438 4.438
14 H 0.139 0.861
15 C -0.159 4.159
16 N -0.514 5.514
17 Si 0.705 3.295
18 H -0.194 1.194
19 H -0.200 1.200
20 H -0.192 1.192
21 C -0.179 4.179
22 H 0.129 0.871
23 C -0.207 4.207
24 C -0.119 4.119
25 C -0.171 4.171
26 C -0.171 4.171
27 H 0.068 0.932
28 H 0.075 0.925
29 H 0.073 0.927
30 H 0.082 0.918
31 H 0.088 0.912
32 H 0.231 0.769
33 H 0.244 0.756
34 H 0.100 0.900
35 H 0.100 0.900
36 H 0.208 0.792
37 H 0.086 0.914
38 H 0.110 0.890
39 H 0.115 0.885
40 H 0.080 0.920
41 H 0.073 0.927
42 H 0.080 0.920
43 H 0.073 0.927
44 H 0.079 0.921
45 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 12.251 -12.875 16.331 24.137
hybrid contribution -0.518 0.408 0.069 0.663
sum 11.733 -12.467 16.400 23.708
Atomic orbital electron populations
1.21691 0.95208 1.00954 1.02602 1.21892 0.96728 0.96052 1.02134
1.20324 0.91151 0.92788 0.87417 0.87750 1.45250 1.41096 1.42302
1.10997 1.15812 0.80150 0.79327 0.83999 1.90891 1.57745 1.67890
1.30893 1.44783 1.41881 1.42189 1.09621 1.20776 0.91507 0.91387
0.96479 1.19679 0.84361 0.83901 0.89609 1.90534 1.49561 1.60705
1.45570 1.42117 1.34151 1.35298 1.09880 1.19436 1.20568 1.19229
0.84596 0.86114 1.25062 0.97362 0.96741 0.96741 1.69618 1.34123
1.28617 1.19049 0.86670 0.80846 0.80038 0.81952 1.19387 1.20002
1.19195 1.22934 0.93843 0.97402 1.03738 0.87081 1.23247 1.01257
1.03840 0.92396 1.21561 0.98341 0.93078 0.98913 1.21358 0.98390
0.94621 1.02764 1.21354 0.95080 1.01981 0.98710 0.93165 0.92477
0.92660 0.91798 0.91178 0.76932 0.75602 0.89979 0.89994 0.79244
0.91396 0.88968 0.88512 0.91987 0.92701 0.92035 0.92655 0.92142
0.92307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.53 9.72 37.16 0.36 -1.17 16
2 C -0.13 -1.12 5.56 -26.73 -0.15 -1.27 16
3 C 0.19 1.87 1.92 -67.93 -0.13 1.74 16
4 H 0.10 1.28 6.57 -51.93 -0.34 0.94 16
5 N -0.74 -8.14 2.74 -58.68 -0.16 -8.30 16
6 C 0.71 10.38 6.41 -86.92 -0.56 9.82 16
7 O -0.60 -10.42 15.71 5.29 0.08 -10.34 16
8 N -0.73 -11.38 5.53 -66.42 -0.37 -11.75 16
9 C 0.13 2.20 6.15 -5.20 -0.03 2.17 16
10 C 0.44 9.59 7.85 -10.98 -0.09 9.51 16
11 O -0.58 -14.53 15.24 5.55 0.08 -14.45 16
12 N -0.58 -13.39 5.09 -10.96 -0.06 -13.45 16
13 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16
14 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16
15 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16
16 N -0.88 -25.01 13.96 55.50 0.77 -24.24 16
17 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16
18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
19 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16
20 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16
21 C -0.16 -1.34 5.46 -90.62 -0.49 -1.84 16
22 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16
23 C -0.17 -1.44 9.01 -26.72 -0.24 -1.68 16
24 C -0.12 -1.09 2.70 -154.50 -0.42 -1.51 16
25 C -0.11 -1.29 8.63 37.16 0.32 -0.96 16
26 C -0.11 -0.88 9.85 37.16 0.37 -0.51 16
27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.40 3.74 7.16 -40.82 -0.29 3.45 16
33 H 0.41 6.31 7.45 -40.82 -0.30 6.00 16
34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
36 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16
37 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16
38 H 0.09 0.68 8.05 -51.93 -0.42 0.27 16
39 H 0.10 0.87 6.06 -51.93 -0.31 0.56 16
40 H 0.06 0.76 7.81 -51.93 -0.41 0.36 16
41 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16
42 H 0.06 0.79 5.55 -51.93 -0.29 0.50 16
43 H 0.05 0.38 7.90 -51.93 -0.41 -0.03 16
44 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16
45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 361.89 15.07 5.45 5.45
Total: -1.00 -31.49 361.89 -7.35 -38.84
By element:
Atomic # 1 Polarization: 24.34 SS G_CDS: -7.14 Total: 17.19 kcal
Atomic # 6 Polarization: 8.03 SS G_CDS: -1.31 Total: 6.72 kcal
Atomic # 7 Polarization: -57.93 SS G_CDS: 0.19 Total: -57.74 kcal
Atomic # 8 Polarization: -24.95 SS G_CDS: 0.17 Total: -24.79 kcal
Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -31.49 -7.35 -38.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000416743811.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.488 kcal
(2) G-P(sol) polarization free energy of solvation -31.489 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.978 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds