Wall clock time and date at job start Tue Mar 31 2020 03:52:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53002 * 109.47077 * 2 1
4 4 H 1.09001 * 109.46902 * 55.00178 * 3 2 1
5 5 N 1.46499 * 109.47412 * 295.00113 * 3 2 1
6 6 C 1.34770 * 119.99881 * 108.13129 * 5 3 2
7 7 O 1.21584 * 120.00433 * 0.02562 * 6 5 3
8 8 N 1.34781 * 119.99936 * 179.97438 * 6 5 3
9 9 C 1.46496 * 119.99937 * 180.02562 * 8 6 5
10 10 C 1.50700 * 109.47057 * 180.02562 * 9 8 6
11 11 O 1.21293 * 119.99795 * 0.02562 * 10 9 8
12 12 N 1.34781 * 120.00263 * 179.97438 * 10 9 8
13 13 C 1.37097 * 120.00048 * 180.02562 * 12 10 9
14 14 H 1.08000 * 120.00127 * 359.97438 * 13 12 10
15 15 C 1.38949 * 119.99779 * 179.97438 * 13 12 10
16 16 N 1.31409 * 119.99708 * 179.72045 * 15 13 12
17 17 Si 1.86796 * 120.00122 * 0.02562 * 15 13 12
18 18 H 1.48491 * 109.47445 * 89.99460 * 17 15 13
19 19 H 1.48501 * 109.46942 * 209.99656 * 17 15 13
20 20 H 1.48502 * 109.47059 * 329.99411 * 17 15 13
21 21 C 1.52994 * 109.46750 * 174.99752 * 3 2 1
22 22 H 1.09003 * 115.55919 * 331.46060 * 21 3 2
23 23 C 1.53007 * 117.49528 * 117.16454 * 21 3 2
24 24 C 1.53003 * 117.49916 * 185.78727 * 21 3 2
25 25 C 1.52997 * 117.49632 * 359.97438 * 24 21 3
26 26 C 1.53000 * 117.50151 * 145.02492 * 24 21 3
27 27 H 1.09002 * 109.47244 * 179.97438 * 1 2 3
28 28 H 1.08996 * 109.46920 * 300.00059 * 1 2 3
29 29 H 1.09005 * 109.46944 * 59.99660 * 1 2 3
30 30 H 1.09004 * 109.46992 * 240.00283 * 2 1 3
31 31 H 1.08991 * 109.46937 * 120.00394 * 2 1 3
32 32 H 0.96995 * 119.99695 * 288.13474 * 5 3 2
33 33 H 0.96995 * 119.99640 * 0.02562 * 8 6 5
34 34 H 1.08998 * 109.47569 * 60.00094 * 9 8 6
35 35 H 1.08999 * 109.47054 * 299.99659 * 9 8 6
36 36 H 0.96997 * 119.99600 * 0.02562 * 12 10 9
37 37 H 0.97000 * 119.99826 * 180.02562 * 16 15 13
38 38 H 1.09005 * 117.49759 * 214.97734 * 23 21 3
39 39 H 1.08999 * 117.49944 * 0.02562 * 23 21 3
40 40 H 1.09004 * 109.47021 * 60.00384 * 25 24 21
41 41 H 1.09004 * 109.47165 * 179.97438 * 25 24 21
42 42 H 1.09001 * 109.47549 * 300.00194 * 25 24 21
43 43 H 1.08999 * 109.47197 * 59.99826 * 26 24 21
44 44 H 1.09001 * 109.46992 * 180.02562 * 26 24 21
45 45 H 1.09006 * 109.46690 * 299.99952 * 26 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 7 1.6525 2.0976 -1.2518
6 6 0.6888 3.0397 -1.2490
7 8 0.1414 3.3465 -0.2076
8 7 0.3326 3.6428 -2.4005
9 6 -0.7145 4.6673 -2.3974
10 6 -0.9212 5.1785 -3.7999
11 8 -0.2593 4.7306 -4.7123
12 7 -1.8423 6.1326 -4.0406
13 6 -2.0307 6.5972 -5.3165
14 1 -1.4408 6.1991 -6.1289
15 6 -2.9807 7.5804 -5.5646
16 7 -3.1575 8.0297 -6.7868
17 14 -4.0005 8.2696 -4.1596
18 1 -3.3038 9.4411 -3.5703
19 1 -5.3292 8.6902 -4.6722
20 1 -4.1794 7.2253 -3.1191
21 6 3.5648 1.4443 0.1258
22 1 3.9938 0.5950 0.6576
23 6 4.3688 2.0294 -1.0371
24 6 4.2593 2.7987 0.2810
25 6 3.3759 4.0477 0.2978
26 6 5.5029 2.8572 1.1703
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 2.0894 1.8531 -2.0825
33 1 0.7696 3.3983 -3.2313
34 1 -0.4145 5.4916 -1.7505
35 1 -1.6444 4.2352 -2.0279
36 1 -2.3719 6.4904 -3.3109
37 1 -3.8204 8.7164 -6.9600
38 1 5.3269 1.5649 -1.2705
39 1 3.8115 2.4134 -1.8915
40 1 2.6754 3.9861 1.1308
41 1 4.0008 4.9333 0.4139
42 1 2.8219 4.1137 -0.6386
43 1 6.2651 2.1865 0.7737
44 1 5.8890 3.8764 1.1883
45 1 5.2403 2.5505 2.1828
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000416743811.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:09
Heat of formation + Delta-G solvation = -71.567295 kcal
Electronic energy + Delta-G solvation = -24617.531688 eV
Core-core repulsion = 21055.797558 eV
Total energy + Delta-G solvation = -3561.734130 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.58765 -40.43017 -39.34923 -36.37323 -36.06859 -35.22951 -33.84670 -33.14944
-30.43169 -29.31082 -28.37865 -27.37037 -26.05856 -22.97300 -22.34545 -21.46743
-21.00696 -20.56146 -20.01744 -19.32214 -17.52222 -17.26310 -17.01934 -16.76824
-16.26827 -16.00493 -15.65363 -15.35952 -15.11448 -14.87038 -14.69919 -14.57667
-14.29302 -14.06833 -13.96893 -13.62790 -13.38026 -13.17171 -13.00238 -12.96756
-12.64182 -12.45018 -12.27729 -12.12075 -12.00932 -11.99971 -11.76058 -11.58350
-11.34187 -10.76911 -10.65022 -10.45212 -10.33740 -10.23935 -9.72922 -8.45985
-6.07817 1.30830 1.33784 1.43348 1.64331 1.78989 2.20133 2.20201
2.75361 2.84723 3.10497 3.34947 3.57917 3.84889 3.95892 3.99863
4.17853 4.20901 4.28146 4.34746 4.40232 4.44980 4.64489 4.76073
4.76221 4.81200 4.93099 4.99339 5.06691 5.09089 5.11123 5.13426
5.17108 5.29328 5.31696 5.33806 5.43116 5.47411 5.49640 5.69698
5.88113 6.00756 6.48777 6.77961 7.06523 7.28708 7.60892 7.78189
8.70573
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.022171 B = 0.003129 C = 0.002996
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1262.601278 B = 8946.598753 C = 9344.400384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.123 4.123
3 C 0.188 3.812
4 H 0.080 0.920
5 N -0.725 5.725
6 C 0.710 3.290
7 O -0.623 6.623
8 N -0.731 5.731
9 C 0.141 3.859
10 C 0.446 3.554
11 O -0.614 6.614
12 N -0.578 5.578
13 C -0.331 4.331
14 H 0.063 0.937
15 C -0.008 4.008
16 N -0.926 5.926
17 Si 0.958 3.042
18 H -0.256 1.256
19 H -0.273 1.273
20 H -0.233 1.233
21 C -0.149 4.149
22 H 0.134 0.866
23 C -0.166 4.166
24 C -0.131 4.131
25 C -0.110 4.110
26 C -0.111 4.111
27 H 0.064 0.936
28 H 0.042 0.958
29 H 0.031 0.969
30 H 0.076 0.924
31 H 0.092 0.908
32 H 0.405 0.595
33 H 0.407 0.593
34 H 0.099 0.901
35 H 0.098 0.902
36 H 0.392 0.608
37 H 0.281 0.719
38 H 0.109 0.891
39 H 0.088 0.912
40 H 0.046 0.954
41 H 0.056 0.944
42 H 0.042 0.958
43 H 0.068 0.932
44 H 0.057 0.943
45 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.990 -14.208 18.856 26.947
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.161 4.161
3 C 0.083 3.917
4 H 0.099 0.901
5 N -0.381 5.381
6 C 0.410 3.590
7 O -0.504 6.504
8 N -0.389 5.389
9 C 0.012 3.988
10 C 0.233 3.767
11 O -0.500 6.500
12 N -0.218 5.218
13 C -0.460 4.460
14 H 0.081 0.919
15 C -0.208 4.208
16 N -0.566 5.566
17 Si 0.778 3.222
18 H -0.181 1.181
19 H -0.198 1.198
20 H -0.156 1.156
21 C -0.168 4.168
22 H 0.152 0.848
23 C -0.203 4.203
24 C -0.131 4.131
25 C -0.167 4.167
26 C -0.168 4.168
27 H 0.083 0.917
28 H 0.061 0.939
29 H 0.050 0.950
30 H 0.095 0.905
31 H 0.110 0.890
32 H 0.242 0.758
33 H 0.244 0.756
34 H 0.117 0.883
35 H 0.116 0.884
36 H 0.227 0.773
37 H 0.091 0.909
38 H 0.127 0.873
39 H 0.106 0.894
40 H 0.065 0.935
41 H 0.075 0.925
42 H 0.061 0.939
43 H 0.087 0.913
44 H 0.076 0.924
45 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 12.816 -14.078 19.035 26.921
hybrid contribution -0.586 0.698 -0.831 1.234
sum 12.230 -13.380 18.204 25.690
Atomic orbital electron populations
1.21667 0.96632 1.01282 1.00704 1.21870 0.95309 0.95149 1.03793
1.20410 0.92343 0.93157 0.85799 0.90146 1.45191 1.39794 1.41075
1.12077 1.15836 0.80483 0.79602 0.83074 1.90873 1.58930 1.68910
1.31660 1.44754 1.41817 1.42240 1.10065 1.20637 0.92921 0.92388
0.92866 1.20522 0.82598 0.82395 0.91135 1.90522 1.50472 1.61473
1.47509 1.41922 1.35147 1.35972 1.08785 1.19028 1.21151 1.20569
0.85241 0.91852 1.26054 0.98247 0.96348 1.00103 1.69779 1.35266
1.29541 1.22035 0.85452 0.78266 0.80091 0.78375 1.18082 1.19797
1.15639 1.22927 0.92468 0.97625 1.03803 0.84806 1.23287 1.01898
1.03368 0.91775 1.21596 0.98902 0.92481 1.00144 1.21275 0.98326
0.96156 1.00985 1.21336 0.94509 1.02243 0.98674 0.91733 0.93883
0.94984 0.90542 0.88982 0.75820 0.75556 0.88282 0.88364 0.77262
0.90917 0.87277 0.89411 0.93531 0.92537 0.93933 0.91325 0.92428
0.91825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.83 9.72 71.98 0.70 -2.13 16
2 C -0.12 -1.82 5.56 30.60 0.17 -1.65 16
3 C 0.19 3.42 1.92 44.99 0.09 3.50 16
4 H 0.08 1.93 6.57 -2.39 -0.02 1.91 16
5 N -0.73 -15.25 2.74 -457.83 -1.26 -16.51 16
6 C 0.71 20.41 6.41 179.05 1.15 21.55 16
7 O -0.62 -21.48 15.71 -3.98 -0.06 -21.54 16
8 N -0.73 -22.47 5.53 -482.31 -2.67 -25.14 16
9 C 0.14 4.68 6.15 85.63 0.53 5.21 16
10 C 0.45 19.54 7.85 87.66 0.69 20.22 16
11 O -0.61 -31.64 15.24 -3.07 -0.05 -31.69 16
12 N -0.58 -26.74 5.09 -306.98 -1.56 -28.30 16
13 C -0.33 -18.85 10.16 84.04 0.85 -18.00 16
14 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16
15 C -0.01 -0.41 5.50 84.93 0.47 0.05 16
16 N -0.93 -54.61 13.96 21.66 0.30 -54.31 16
17 Si 0.96 38.32 27.74 68.60 1.90 40.22 16
18 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16
19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16
20 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16
21 C -0.15 -2.12 5.46 -10.79 -0.06 -2.18 16
22 H 0.13 1.37 8.07 -2.39 -0.02 1.35 16
23 C -0.17 -2.42 9.01 30.60 0.28 -2.14 16
24 C -0.13 -2.18 2.70 -52.18 -0.14 -2.32 16
25 C -0.11 -2.44 8.63 71.98 0.62 -1.81 16
26 C -0.11 -1.44 9.85 71.98 0.71 -0.73 16
27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16
29 H 0.03 0.76 7.29 -2.38 -0.02 0.74 16
30 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16
31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
32 H 0.40 7.17 7.16 -92.71 -0.66 6.51 16
33 H 0.41 12.58 7.45 -92.71 -0.69 11.89 16
34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16
35 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16
36 H 0.39 15.27 5.76 -92.71 -0.53 14.73 16
37 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16
38 H 0.11 1.26 8.05 -2.38 -0.02 1.24 16
39 H 0.09 1.44 6.06 -2.39 -0.01 1.43 16
40 H 0.05 1.15 7.81 -2.38 -0.02 1.13 16
41 H 0.06 1.18 7.92 -2.39 -0.02 1.16 16
42 H 0.04 1.08 5.55 -2.39 -0.01 1.07 16
43 H 0.07 0.72 7.90 -2.39 -0.02 0.70 16
44 H 0.06 0.78 7.92 -2.39 -0.02 0.76 16
45 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16
Total: -1.00 -72.03 361.89 1.73 -70.30
By element:
Atomic # 1 Polarization: 48.30 SS G_CDS: -0.93 Total: 47.37 kcal
Atomic # 6 Polarization: 13.54 SS G_CDS: 6.05 Total: 19.59 kcal
Atomic # 7 Polarization: -119.07 SS G_CDS: -5.18 Total: -124.25 kcal
Atomic # 8 Polarization: -53.12 SS G_CDS: -0.11 Total: -53.23 kcal
Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal
Total: -72.03 1.73 -70.30 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000416743811.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.268 kcal
(2) G-P(sol) polarization free energy of solvation -72.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.294 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds