Wall clock time and date at job start Tue Mar 31 2020 04:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46723 * 2 1 4 4 N 1.46500 * 109.47180 * 119.99601 * 2 1 3 5 5 C 1.46762 * 124.34823 * 120.00536 * 4 2 1 6 6 C 1.54479 * 105.47249 * 197.03616 * 5 4 2 7 7 C 1.54626 * 101.76629 * 334.58256 * 6 5 4 8 8 H 1.08998 * 110.60088 * 266.06453 * 7 6 5 9 9 N 1.46500 * 110.48581 * 143.47523 * 7 6 5 10 10 C 1.34777 * 119.99951 * 158.77444 * 9 7 6 11 11 O 1.21284 * 120.00069 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00049 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46959 * 319.99772 * 12 10 9 14 14 N 1.46899 * 109.47244 * 199.99894 * 12 10 9 15 15 C 1.52997 * 109.47078 * 79.99684 * 12 10 9 16 16 C 1.53004 * 109.47236 * 184.99974 * 15 12 10 17 17 C 1.50703 * 109.47376 * 180.02562 * 16 15 12 18 18 H 1.07998 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00099 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99882 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99917 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47230 * 89.99538 * 21 19 17 23 23 H 1.48498 * 109.47066 * 210.00161 * 21 19 17 24 24 H 1.48502 * 109.47115 * 329.99512 * 21 19 17 25 25 C 1.34423 * 124.35012 * 300.02716 * 4 2 1 26 26 O 1.21281 * 124.94269 * 359.53531 * 25 4 2 27 27 H 1.08995 * 109.47105 * 299.99672 * 1 2 3 28 28 H 1.08997 * 109.47450 * 60.00511 * 1 2 3 29 29 H 1.09007 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47726 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47101 * 179.97438 * 3 2 1 32 32 H 1.09010 * 109.47054 * 299.99831 * 3 2 1 33 33 H 1.09001 * 109.47378 * 59.99973 * 3 2 1 34 34 H 1.09002 * 110.24502 * 316.03979 * 5 4 2 35 35 H 1.09006 * 110.24687 * 78.03662 * 5 4 2 36 36 H 1.09006 * 110.96555 * 216.46628 * 6 5 4 37 37 H 1.09001 * 110.96722 * 92.70728 * 6 5 4 38 38 H 0.96998 * 119.99794 * 338.77176 * 9 7 6 39 39 H 1.00893 * 111.00096 * 176.04982 * 14 12 10 40 40 H 1.00903 * 110.99833 * 299.99603 * 14 12 10 41 41 H 1.09001 * 109.47630 * 305.00104 * 15 12 10 42 42 H 1.09004 * 109.47346 * 65.00234 * 15 12 10 43 43 H 1.09001 * 109.46917 * 300.00567 * 16 15 12 44 44 H 1.09004 * 109.46741 * 59.99889 * 16 15 12 45 45 H 0.97004 * 119.99997 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8657 -1.8886 1.1728 6 6 2.7606 -2.4954 2.5896 7 6 2.4033 -1.2536 3.4388 8 1 3.3032 -0.8039 3.8582 9 7 1.4667 -1.6145 4.5060 10 6 1.3524 -0.8300 5.5959 11 8 2.0251 0.1745 5.6934 12 6 0.3894 -1.2015 6.6940 13 1 -0.5316 -1.5852 6.2551 14 7 0.0881 -0.0134 7.5037 15 6 1.0184 -2.2774 7.5814 16 6 -0.0040 -2.7439 8.6197 17 6 0.6157 -3.8033 9.4943 18 1 1.6367 -4.1126 9.3266 19 6 -0.1206 -4.3769 10.5092 20 7 0.4201 -5.3017 11.2720 21 14 -1.8864 -3.8414 10.7997 22 1 -2.8001 -4.6900 9.9933 23 1 -2.2173 -3.9872 12.2399 24 1 -2.0456 -2.4210 10.3967 25 6 1.7476 -0.3084 2.4562 26 8 1.0760 0.6544 2.7610 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9564 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 2.4971 -2.5969 0.4308 35 1 3.8984 -1.6161 0.9549 36 1 3.7137 -2.9213 2.9031 37 1 1.9673 -3.2416 2.6364 38 1 0.9290 -2.4180 4.4281 39 1 -0.6047 -0.2214 8.2071 40 1 0.9265 0.3614 7.9218 41 1 1.3231 -3.1238 6.9658 42 1 1.8902 -1.8653 8.0897 43 1 -0.3087 -1.8975 9.2353 44 1 -0.8758 -3.1560 8.1115 45 1 -0.0980 -5.7055 11.9858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424126465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:50 Heat of formation + Delta-G solvation = -78.554176 kcal Electronic energy + Delta-G solvation = -24643.991650 eV Core-core repulsion = 21081.954546 eV Total energy + Delta-G solvation = -3562.037104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.02785 -39.29781 -36.57000 -36.01546 -35.36457 -33.45929 -32.78678 -30.29650 -29.73327 -27.79305 -27.46528 -26.36941 -23.82490 -22.75624 -22.05286 -20.60937 -19.90585 -19.06954 -17.63371 -17.07342 -16.88016 -16.58135 -15.88178 -15.15950 -14.90100 -14.61063 -14.26263 -14.17380 -14.10672 -13.91512 -13.83041 -13.33911 -13.25809 -13.02046 -12.73299 -12.67898 -12.37818 -12.31951 -12.12320 -11.81923 -11.56148 -11.54179 -11.39244 -11.35804 -10.96637 -10.35121 -10.19062 -10.06813 -9.88024 -9.38401 -9.31035 -8.96025 -8.86632 -8.61965 -8.25174 -6.11781 -4.11188 2.34540 2.63544 2.96888 3.25447 3.27271 3.34155 3.36024 4.06618 4.12768 4.38110 4.49701 4.53647 4.67870 4.76996 4.87595 4.93352 5.08603 5.09950 5.21587 5.25833 5.34450 5.36965 5.43662 5.49348 5.50769 5.57198 5.59579 5.63796 5.92652 5.98558 6.15550 6.32593 6.35138 6.43027 6.66858 6.90542 7.10492 7.22845 7.35779 7.61078 7.67751 7.83894 8.08179 8.43721 8.45590 8.92154 9.49754 11.01414 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.003021 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.736604 B = 9265.322277 C = 9540.010150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.154 3.846 3 C -0.169 4.169 4 N -0.622 5.622 5 C 0.105 3.895 6 C -0.138 4.138 7 C 0.117 3.883 8 H 0.121 0.879 9 N -0.720 5.720 10 C 0.531 3.469 11 O -0.522 6.522 12 C 0.075 3.925 13 H 0.096 0.904 14 N -0.829 5.829 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.505 3.495 26 O -0.501 6.501 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.404 0.596 39 H 0.350 0.650 40 H 0.348 0.652 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 5.682 -25.164 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 C -0.227 4.227 4 N -0.359 5.359 5 C -0.018 4.018 6 C -0.176 4.176 7 C 0.008 3.992 8 H 0.139 0.861 9 N -0.374 5.374 10 C 0.318 3.682 11 O -0.396 6.396 12 C -0.041 4.041 13 H 0.114 0.886 14 N -0.361 5.361 15 C -0.169 4.169 16 C -0.049 4.049 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.290 3.710 26 O -0.373 6.373 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.240 0.760 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.441 7.224 -25.488 26.714 hybrid contribution -0.738 -0.981 0.900 1.522 sum 2.703 6.243 -24.588 25.512 Atomic orbital electron populations 1.22185 0.94701 1.02353 1.03383 1.20918 0.94483 0.93134 0.86240 1.22194 1.01207 0.95882 1.03413 1.48453 1.51763 1.29604 1.06124 1.22068 0.95249 0.86693 0.97799 1.22926 1.04617 0.96711 0.93390 1.21502 0.94583 0.95368 0.87770 0.86138 1.45748 1.44033 1.28621 1.19009 1.20802 0.83033 0.82312 0.82083 1.90655 1.44986 1.25110 1.78843 1.21476 0.97567 0.91865 0.93144 0.88626 1.58693 1.16910 1.29812 1.30716 1.22210 1.00165 0.96686 0.97828 1.19582 0.94525 0.96698 0.94061 1.21068 1.00862 1.20047 1.14140 0.91059 1.25041 0.98317 0.94557 0.95541 1.69909 1.37301 1.26906 1.19869 0.86762 0.85204 0.79785 0.77418 1.20277 1.21353 1.18930 1.21292 0.80487 0.85600 0.83595 1.90734 1.37937 1.27613 1.81021 0.90910 0.91526 0.92520 0.89578 0.92532 0.91537 0.90845 0.90071 0.90793 0.88089 0.89059 0.76034 0.83485 0.83859 0.91896 0.92009 0.96557 0.96785 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.20 37.16 0.34 -1.11 16 2 C 0.15 1.24 3.48 -67.93 -0.24 1.00 16 3 C -0.17 -1.47 9.20 37.16 0.34 -1.13 16 4 N -0.62 -5.68 2.83 -164.84 -0.47 -6.15 16 5 C 0.11 0.59 7.30 -3.12 -0.02 0.56 16 6 C -0.14 -0.86 6.86 -25.10 -0.17 -1.03 16 7 C 0.12 1.31 3.23 -67.94 -0.22 1.09 16 8 H 0.12 1.49 7.66 -51.93 -0.40 1.09 16 9 N -0.72 -9.19 5.15 -53.82 -0.28 -9.47 16 10 C 0.53 8.93 7.03 -10.99 -0.08 8.85 16 11 O -0.52 -10.57 15.96 5.55 0.09 -10.48 16 12 C 0.07 1.25 3.21 -68.87 -0.22 1.03 16 13 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 14 N -0.83 -14.29 8.94 -5.66 -0.05 -14.34 16 15 C -0.13 -2.41 4.78 -26.73 -0.13 -2.54 16 16 C -0.01 -0.25 3.81 -27.88 -0.11 -0.36 16 17 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 21 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 25 C 0.51 6.58 7.04 -10.86 -0.08 6.50 16 26 O -0.50 -8.81 15.08 5.56 0.08 -8.72 16 27 H 0.07 0.87 6.80 -51.93 -0.35 0.51 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.88 6.77 -51.93 -0.35 0.53 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.49 7.80 -51.93 -0.41 0.08 16 38 H 0.40 4.14 8.38 -40.82 -0.34 3.80 16 39 H 0.35 5.79 7.55 -39.30 -0.30 5.50 16 40 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.36 5.93 -51.93 -0.31 0.06 16 44 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -36.03 363.23 -7.47 -43.50 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.42 Total: 10.34 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.01 Total: -0.09 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.02 Total: -56.49 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.17 Total: -19.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.03 -7.47 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.059 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds