Wall clock time and date at job start Tue Mar 31 2020 04:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46723 * 2 1 4 4 N 1.46500 * 109.47180 * 119.99601 * 2 1 3 5 5 C 1.46762 * 124.34823 * 120.00536 * 4 2 1 6 6 C 1.54479 * 105.47249 * 197.03616 * 5 4 2 7 7 C 1.54626 * 101.76629 * 334.58256 * 6 5 4 8 8 H 1.08998 * 110.60088 * 266.06453 * 7 6 5 9 9 N 1.46500 * 110.48581 * 143.47523 * 7 6 5 10 10 C 1.34777 * 119.99951 * 158.77444 * 9 7 6 11 11 O 1.21284 * 120.00069 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00049 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46959 * 319.99772 * 12 10 9 14 14 N 1.46899 * 109.47244 * 199.99894 * 12 10 9 15 15 C 1.52997 * 109.47078 * 79.99684 * 12 10 9 16 16 C 1.53004 * 109.47236 * 184.99974 * 15 12 10 17 17 C 1.50703 * 109.47376 * 180.02562 * 16 15 12 18 18 H 1.07998 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00099 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99882 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99917 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47230 * 89.99538 * 21 19 17 23 23 H 1.48498 * 109.47066 * 210.00161 * 21 19 17 24 24 H 1.48502 * 109.47115 * 329.99512 * 21 19 17 25 25 C 1.34423 * 124.35012 * 300.02716 * 4 2 1 26 26 O 1.21281 * 124.94269 * 359.53531 * 25 4 2 27 27 H 1.08995 * 109.47105 * 299.99672 * 1 2 3 28 28 H 1.08997 * 109.47450 * 60.00511 * 1 2 3 29 29 H 1.09007 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47726 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47101 * 179.97438 * 3 2 1 32 32 H 1.09010 * 109.47054 * 299.99831 * 3 2 1 33 33 H 1.09001 * 109.47378 * 59.99973 * 3 2 1 34 34 H 1.09002 * 110.24502 * 316.03979 * 5 4 2 35 35 H 1.09006 * 110.24687 * 78.03662 * 5 4 2 36 36 H 1.09006 * 110.96555 * 216.46628 * 6 5 4 37 37 H 1.09001 * 110.96722 * 92.70728 * 6 5 4 38 38 H 0.96998 * 119.99794 * 338.77176 * 9 7 6 39 39 H 1.00893 * 111.00096 * 176.04982 * 14 12 10 40 40 H 1.00903 * 110.99833 * 299.99603 * 14 12 10 41 41 H 1.09001 * 109.47630 * 305.00104 * 15 12 10 42 42 H 1.09004 * 109.47346 * 65.00234 * 15 12 10 43 43 H 1.09001 * 109.46917 * 300.00567 * 16 15 12 44 44 H 1.09004 * 109.46741 * 59.99889 * 16 15 12 45 45 H 0.97004 * 119.99997 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8657 -1.8886 1.1728 6 6 2.7606 -2.4954 2.5896 7 6 2.4033 -1.2536 3.4388 8 1 3.3032 -0.8039 3.8582 9 7 1.4667 -1.6145 4.5060 10 6 1.3524 -0.8300 5.5959 11 8 2.0251 0.1745 5.6934 12 6 0.3894 -1.2015 6.6940 13 1 -0.5316 -1.5852 6.2551 14 7 0.0881 -0.0134 7.5037 15 6 1.0184 -2.2774 7.5814 16 6 -0.0040 -2.7439 8.6197 17 6 0.6157 -3.8033 9.4943 18 1 1.6367 -4.1126 9.3266 19 6 -0.1206 -4.3769 10.5092 20 7 0.4201 -5.3017 11.2720 21 14 -1.8864 -3.8414 10.7997 22 1 -2.8001 -4.6900 9.9933 23 1 -2.2173 -3.9872 12.2399 24 1 -2.0456 -2.4210 10.3967 25 6 1.7476 -0.3084 2.4562 26 8 1.0760 0.6544 2.7610 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9564 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 2.4971 -2.5969 0.4308 35 1 3.8984 -1.6161 0.9549 36 1 3.7137 -2.9213 2.9031 37 1 1.9673 -3.2416 2.6364 38 1 0.9290 -2.4180 4.4281 39 1 -0.6047 -0.2214 8.2071 40 1 0.9265 0.3614 7.9218 41 1 1.3231 -3.1238 6.9658 42 1 1.8902 -1.8653 8.0897 43 1 -0.3087 -1.8975 9.2353 44 1 -0.8758 -3.1560 8.1115 45 1 -0.0980 -5.7055 11.9858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424126465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:49 Heat of formation + Delta-G solvation = -107.598367 kcal Electronic energy + Delta-G solvation = -24645.251101 eV Core-core repulsion = 21081.954546 eV Total energy + Delta-G solvation = -3563.296555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92151 -40.52366 -37.51293 -37.25390 -36.53201 -34.81049 -34.38702 -32.08205 -30.51952 -28.85371 -28.15113 -27.71869 -25.39583 -23.45656 -22.87870 -22.20055 -21.24462 -19.92436 -19.17192 -18.44205 -18.00048 -17.64372 -16.76412 -16.32645 -16.07115 -16.01110 -15.89440 -15.47020 -15.08340 -14.80984 -14.66192 -14.63803 -14.62154 -14.26084 -13.98343 -13.73807 -13.51373 -13.08541 -13.04915 -12.96631 -12.76211 -12.69769 -12.27897 -12.20559 -12.11088 -11.97287 -11.85472 -11.68711 -11.39784 -11.23233 -10.80664 -10.76569 -9.92694 -9.69479 -9.64510 -8.29368 -6.34303 1.37101 1.38015 1.40621 1.51360 1.61077 1.96061 2.28102 2.36490 3.06366 3.34551 3.44891 3.70747 3.78645 3.90289 4.00239 4.04524 4.10492 4.10596 4.16872 4.29319 4.51362 4.59877 4.65987 4.68354 4.73063 4.80380 4.84885 4.87411 4.96148 4.98406 5.05612 5.21635 5.27706 5.35352 5.37773 5.47255 5.63231 5.72507 6.04977 6.13905 6.26054 6.45910 6.48983 6.74023 7.16677 7.24925 7.30500 8.87239 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.003021 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.736604 B = 9265.322277 C = 9540.010150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.614 5.614 5 C 0.102 3.898 6 C -0.125 4.125 7 C 0.108 3.892 8 H 0.104 0.896 9 N -0.705 5.705 10 C 0.527 3.473 11 O -0.564 6.564 12 C 0.082 3.918 13 H 0.115 0.885 14 N -0.834 5.834 15 C -0.115 4.115 16 C -0.007 4.007 17 C -0.532 4.532 18 H 0.030 0.970 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.951 3.049 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.242 1.242 25 C 0.493 3.507 26 O -0.560 6.560 27 H 0.031 0.969 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.418 0.582 39 H 0.354 0.646 40 H 0.345 0.655 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.022 0.978 44 H 0.030 0.970 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 4.801 -28.001 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C -0.224 4.224 4 N -0.349 5.349 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.001 4.001 8 H 0.121 0.879 9 N -0.359 5.359 10 C 0.314 3.686 11 O -0.441 6.441 12 C -0.033 4.033 13 H 0.133 0.867 14 N -0.366 5.366 15 C -0.155 4.155 16 C -0.045 4.045 17 C -0.570 4.570 18 H 0.048 0.952 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.165 1.165 25 C 0.279 3.721 26 O -0.437 6.437 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.256 0.744 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.579 6.288 -28.404 29.205 hybrid contribution -0.349 -0.740 1.704 1.890 sum 2.230 5.548 -26.700 27.361 Atomic orbital electron populations 1.22140 0.95313 1.02434 1.02283 1.21159 0.94088 0.93011 0.87036 1.22159 1.01410 0.96485 1.02320 1.48594 1.50930 1.30168 1.05176 1.22417 0.95841 0.85699 0.98031 1.23010 1.06169 0.94632 0.92456 1.21724 0.93222 0.97721 0.87439 0.87866 1.45629 1.43880 1.28136 1.18262 1.20837 0.82560 0.82186 0.83066 1.90637 1.46558 1.27014 1.79926 1.21425 0.98140 0.90901 0.92820 0.86687 1.58708 1.16925 1.30005 1.30950 1.22006 0.98619 0.97563 0.97327 1.19514 0.95501 0.95243 0.94220 1.21426 0.99406 1.21115 1.15052 0.95158 1.26032 1.03482 0.94537 0.95248 1.70070 1.39486 1.28746 1.20942 0.85643 0.79000 0.80673 0.77244 1.18912 1.21595 1.16513 1.21629 0.80069 0.85121 0.85265 1.90703 1.40767 1.30044 1.82184 0.94960 0.89659 0.91767 0.85484 0.92061 0.89551 0.94990 0.86807 0.88868 0.85968 0.87507 0.74403 0.83021 0.84198 0.90987 0.93850 0.95964 0.95184 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.20 71.98 0.66 -1.95 16 2 C 0.15 2.04 3.48 44.99 0.16 2.19 16 3 C -0.17 -2.75 9.20 71.98 0.66 -2.09 16 4 N -0.61 -9.92 2.83 -794.02 -2.25 -12.17 16 5 C 0.10 0.72 7.30 86.83 0.63 1.35 16 6 C -0.12 -1.14 6.86 31.65 0.22 -0.92 16 7 C 0.11 2.32 3.23 44.98 0.15 2.46 16 8 H 0.10 2.59 7.66 -2.39 -0.02 2.57 16 9 N -0.70 -17.40 5.15 -442.57 -2.28 -19.68 16 10 C 0.53 17.71 7.03 87.66 0.62 18.32 16 11 O -0.56 -23.53 15.96 -3.04 -0.05 -23.57 16 12 C 0.08 2.67 3.21 44.17 0.14 2.81 16 13 H 0.12 3.29 8.14 -2.39 -0.02 3.28 16 14 N -0.83 -28.26 8.94 -171.81 -1.54 -29.79 16 15 C -0.12 -4.24 4.78 30.59 0.15 -4.09 16 16 C -0.01 -0.32 3.81 29.85 0.11 -0.20 16 17 C -0.53 -29.65 9.66 25.60 0.25 -29.40 16 18 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 19 C 0.00 0.22 5.47 84.66 0.46 0.68 16 20 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 21 Si 0.95 42.82 27.47 68.60 1.88 44.70 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 25 C 0.49 12.80 7.04 87.90 0.62 13.42 16 26 O -0.56 -20.70 15.08 -3.03 -0.05 -20.75 16 27 H 0.03 0.79 6.80 -2.39 -0.02 0.77 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.13 0.78 8.07 -2.39 -0.02 0.76 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.03 0.80 6.77 -2.39 -0.02 0.79 16 34 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.11 0.70 7.80 -2.39 -0.02 0.68 16 38 H 0.42 7.74 8.38 -92.71 -0.78 6.96 16 39 H 0.35 11.22 7.55 -89.70 -0.68 10.54 16 40 H 0.34 12.12 8.58 -89.69 -0.77 11.35 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.02 0.94 5.93 -2.39 -0.01 0.93 16 44 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -83.66 363.23 -0.42 -84.08 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -1.27 Total: 33.20 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 4.82 Total: 2.58 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.76 Total: -120.24 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.09 Total: -44.32 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.70 kcal Total: -83.66 -0.42 -84.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.518 kcal (2) G-P(sol) polarization free energy of solvation -83.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds