Wall clock time and date at job start Tue Mar 31 2020 03:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47049 * 2 1 4 4 H 1.08998 * 109.66343 * 55.29612 * 3 2 1 5 5 C 1.50074 * 109.41203 * 175.44861 * 3 2 1 6 6 O 1.21278 * 118.50240 * 287.26122 * 5 3 2 7 7 N 1.33376 * 123.01045 * 107.43130 * 5 3 2 8 8 C 1.46497 * 117.70784 * 184.14415 * 7 5 3 9 9 C 1.53002 * 109.47329 * 270.02457 * 8 7 5 10 10 C 1.45653 * 124.58941 * 4.17058 * 7 5 3 11 11 C 1.52998 * 110.77099 * 338.07586 * 10 7 5 12 12 N 1.47050 * 109.56781 * 294.99857 * 3 2 1 13 13 C 1.34777 * 121.35134 * 102.93615 * 12 3 2 14 14 O 1.21584 * 119.99867 * 184.68396 * 13 12 3 15 15 N 1.34774 * 120.00344 * 4.68494 * 13 12 3 16 16 C 1.46497 * 120.00309 * 174.70405 * 15 13 12 17 17 C 1.52997 * 109.47298 * 180.27541 * 16 15 13 18 18 C 1.50699 * 109.47289 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99901 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99961 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99875 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99766 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47053 * 59.99824 * 22 20 18 24 24 H 1.48500 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47170 * 299.99776 * 22 20 18 26 26 H 1.09002 * 109.47071 * 300.00419 * 1 2 3 27 27 H 1.09002 * 109.47104 * 60.00069 * 1 2 3 28 28 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47210 * 240.00336 * 2 1 3 30 30 H 1.09002 * 109.47481 * 119.99543 * 2 1 3 31 31 H 1.08997 * 109.46964 * 30.02649 * 8 7 5 32 32 H 1.09007 * 109.47213 * 150.02456 * 8 7 5 33 33 H 1.08997 * 109.46968 * 59.99888 * 9 8 7 34 34 H 1.08998 * 109.47139 * 179.97438 * 9 8 7 35 35 H 1.09007 * 109.46485 * 299.99968 * 9 8 7 36 36 H 1.09001 * 109.21958 * 217.74299 * 10 7 5 37 37 H 1.09001 * 109.18416 * 98.38105 * 10 7 5 38 38 H 1.08998 * 109.71609 * 287.04795 * 11 10 7 39 39 H 1.08997 * 109.71562 * 166.39833 * 11 10 7 40 40 H 0.97003 * 119.99709 * 354.97847 * 15 13 12 41 41 H 1.09004 * 109.46639 * 300.27051 * 16 15 13 42 42 H 1.08997 * 109.47467 * 60.27039 * 16 15 13 43 43 H 1.09001 * 109.47043 * 300.00117 * 17 16 15 44 44 H 1.09005 * 109.47124 * 59.99657 * 17 16 15 45 45 H 0.97003 * 119.99718 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6113 1.9832 0.8438 5 6 3.5365 1.4425 0.1123 6 8 4.0369 1.1533 1.1786 7 7 4.3416 1.7492 -0.9059 8 6 5.7857 1.6224 -0.6945 9 6 6.3420 2.9461 -0.1659 10 6 3.8858 2.2019 -2.2131 11 6 2.4365 1.7778 -2.4591 12 7 1.6521 2.1021 -1.2558 13 6 0.6239 2.9722 -1.3023 14 8 0.2698 3.4384 -2.3680 15 7 -0.0118 3.3256 -0.1677 16 6 -1.0514 4.3573 -0.2013 17 6 -1.6031 4.5716 1.2095 18 6 -2.6721 5.6332 1.1750 19 1 -2.9317 6.1080 0.2403 20 6 -3.3187 5.9985 2.3367 21 7 -3.0029 5.4200 3.4748 22 14 -4.6443 7.3140 2.2938 23 1 -5.7424 6.8809 1.3928 24 1 -5.1797 7.5221 3.6632 25 1 -4.0640 8.5852 1.7913 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9787 0.8318 0.0306 32 1 6.2709 1.3757 -1.6389 33 1 5.8568 3.1928 0.7785 34 1 7.4163 2.8516 -0.0082 35 1 6.1489 3.7367 -0.8910 36 1 4.5223 1.7689 -2.9848 37 1 3.9543 3.2887 -2.2597 38 1 2.3943 0.7051 -2.6478 39 1 2.0356 2.3186 -3.3164 40 1 0.2219 2.8997 0.6719 41 1 -0.6255 5.2903 -0.5705 42 1 -1.8576 4.0393 -0.8623 43 1 -2.0289 3.6386 1.5787 44 1 -0.7968 4.8896 1.8705 45 1 -3.4576 5.6773 4.2921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430326345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:08 Heat of formation + Delta-G solvation = -63.859548 kcal Electronic energy + Delta-G solvation = -25272.878847 eV Core-core repulsion = 21711.478950 eV Total energy + Delta-G solvation = -3561.399897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25673 -39.42692 -36.70233 -36.19435 -34.95293 -33.02897 -32.72875 -31.30676 -29.87698 -29.13340 -27.12186 -24.96197 -23.93212 -23.39585 -21.94174 -21.10208 -20.44787 -18.63484 -17.98809 -17.57833 -16.41120 -16.33523 -16.30065 -15.47201 -15.13800 -14.64590 -14.50739 -14.34895 -14.21335 -14.00782 -13.64483 -13.41843 -13.10270 -12.87573 -12.68460 -12.34711 -12.24654 -12.16247 -12.09284 -11.74226 -11.50348 -11.20946 -11.18909 -11.02959 -10.99499 -10.64601 -10.39505 -10.32224 -9.90410 -9.55635 -9.28182 -9.06288 -8.83700 -8.47571 -8.27536 -6.08100 -4.11134 2.33799 2.45593 2.82121 3.32024 3.36032 3.39108 3.40386 4.08235 4.10039 4.42446 4.49533 4.64430 4.70557 4.81117 4.83279 4.98687 5.03203 5.16219 5.23184 5.26624 5.28880 5.39534 5.49000 5.50452 5.65723 5.68129 5.83175 5.93860 5.95055 6.05987 6.16273 6.23266 6.37173 6.37970 6.74547 6.92103 6.98396 7.13697 7.54299 7.62619 7.86395 7.90170 8.17666 8.30997 8.82613 8.94900 9.53584 11.03444 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.003448 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.769320 B = 8117.866726 C = 8234.899205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.130 3.870 4 H 0.118 0.882 5 C 0.518 3.482 6 O -0.540 6.540 7 N -0.600 5.600 8 C 0.103 3.897 9 C -0.167 4.167 10 C 0.098 3.902 11 C 0.115 3.885 12 N -0.634 5.634 13 C 0.710 3.290 14 O -0.590 6.590 15 N -0.736 5.736 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.392 0.608 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.804 -11.732 -10.244 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.023 3.977 4 H 0.136 0.864 5 C 0.305 3.695 6 O -0.416 6.416 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.225 4.225 10 C -0.026 4.026 11 C -0.008 4.008 12 N -0.375 5.375 13 C 0.412 3.588 14 O -0.468 6.468 15 N -0.390 5.390 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.227 0.773 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.687 -11.469 -10.274 22.706 hybrid contribution -0.545 0.591 0.470 0.931 sum 16.142 -10.878 -9.804 21.795 Atomic orbital electron populations 1.21765 0.93892 1.02318 1.02969 1.21796 0.97610 0.93498 1.03328 1.21371 0.90887 0.96479 0.88980 0.86398 1.20094 0.89273 0.76535 0.83611 1.90743 1.75557 1.48910 1.26418 1.47305 1.07109 1.66015 1.12874 1.21550 0.79563 0.99051 1.01764 1.22092 1.01018 0.97357 1.02069 1.21895 0.96080 1.00561 0.84066 1.21751 0.88499 1.01374 0.89214 1.47448 1.34215 1.46903 1.08893 1.15827 0.79135 0.78812 0.85021 1.90890 1.67973 1.59241 1.28688 1.45733 1.41349 1.43680 1.08275 1.21639 0.87500 0.87793 1.01408 1.19322 0.96229 0.97670 0.89229 1.20992 1.19761 1.20986 0.94317 0.92271 1.24989 0.97197 0.96623 0.95413 1.69947 1.42205 1.42321 0.98743 0.86573 0.81888 0.82028 0.77041 1.20104 1.21260 1.20132 0.91859 0.92201 0.92031 0.91279 0.89767 0.89617 0.90530 0.91968 0.91609 0.92586 0.89408 0.91072 0.90739 0.86740 0.77291 0.92777 0.92496 0.95910 0.96033 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C -0.12 -1.27 5.49 -26.73 -0.15 -1.42 16 3 C 0.13 1.58 2.40 -69.08 -0.17 1.41 16 4 H 0.12 1.54 5.89 -51.93 -0.31 1.23 16 5 C 0.52 6.55 6.80 -11.91 -0.08 6.47 16 6 O -0.54 -8.36 16.25 5.56 0.09 -8.27 16 7 N -0.60 -6.03 2.81 -175.03 -0.49 -6.52 16 8 C 0.10 0.87 5.88 -4.04 -0.02 0.85 16 9 C -0.17 -1.45 10.23 37.16 0.38 -1.07 16 10 C 0.10 0.79 6.57 -4.50 -0.03 0.76 16 11 C 0.12 1.11 6.39 -3.63 -0.02 1.09 16 12 N -0.63 -8.12 2.26 -172.44 -0.39 -8.51 16 13 C 0.71 12.02 7.37 -86.92 -0.64 11.38 16 14 O -0.59 -11.88 15.84 5.29 0.08 -11.80 16 15 N -0.74 -13.02 5.46 -65.23 -0.36 -13.37 16 16 C 0.14 2.95 5.62 -4.04 -0.02 2.93 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 22 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.77 7.06 -51.93 -0.37 0.40 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.64 7.37 -51.93 -0.38 0.26 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.82 7.23 -51.93 -0.38 0.45 16 32 H 0.08 0.44 7.81 -51.93 -0.41 0.03 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.44 7.84 -51.93 -0.41 0.03 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 7.42 -51.93 -0.39 0.20 16 39 H 0.11 1.19 7.07 -51.93 -0.37 0.83 16 40 H 0.39 6.34 6.10 -40.82 -0.25 6.09 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -33.16 362.26 -8.27 -41.43 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.44 Total: 2.54 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.95 Total: 8.08 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.50 Total: -53.81 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.17 Total: -20.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.16 -8.27 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430326345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.431 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds