Wall clock time and date at job start Tue Mar 31 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00126 * 2 1 4 4 O 1.21277 * 120.00251 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99847 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47249 * 60.00424 * 5 3 2 7 7 C 1.53004 * 109.47425 * 300.00209 * 5 3 2 8 8 C 1.53005 * 109.47332 * 180.02562 * 5 3 2 9 9 N 1.46497 * 109.47373 * 180.02562 * 8 5 3 10 10 C 1.34770 * 120.00007 * 180.02562 * 9 8 5 11 11 O 1.21588 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00458 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00453 * 180.27639 * 12 10 9 14 14 C 1.52999 * 109.47238 * 178.20984 * 13 12 10 15 15 C 1.50706 * 115.55242 * 65.12157 * 14 13 12 16 16 H 1.08004 * 119.99710 * 265.41242 * 15 14 13 17 17 C 1.37870 * 119.99833 * 85.41175 * 15 14 13 18 18 N 1.31511 * 120.00288 * 353.55860 * 17 15 14 19 19 Si 1.86798 * 120.00127 * 173.55930 * 17 15 14 20 20 H 1.48502 * 109.46883 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47175 * 119.99719 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00200 * 19 17 15 23 23 C 1.53004 * 117.49443 * 279.45489 * 14 13 12 24 24 C 1.53001 * 117.50051 * 210.79740 * 14 13 12 25 25 H 1.09004 * 109.46733 * 59.99662 * 1 2 3 26 26 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47029 * 299.99861 * 1 2 3 28 28 H 0.97001 * 119.99545 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.46869 * 299.99808 * 6 5 3 31 31 H 1.08994 * 109.47027 * 59.99950 * 6 5 3 32 32 H 1.09001 * 109.47141 * 300.00071 * 7 5 3 33 33 H 1.08996 * 109.46603 * 60.00104 * 7 5 3 34 34 H 1.08995 * 109.46914 * 179.97438 * 7 5 3 35 35 H 1.09001 * 109.47005 * 60.00069 * 8 5 3 36 36 H 1.08998 * 109.46862 * 300.00874 * 8 5 3 37 37 H 0.97005 * 119.99716 * 359.97438 * 9 8 5 38 38 H 0.97005 * 119.99265 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46765 * 298.20448 * 13 12 10 40 40 H 1.08998 * 109.47048 * 58.20610 * 13 12 10 41 41 H 0.97003 * 120.00760 * 185.05299 * 18 17 15 42 42 H 1.08989 * 117.50087 * 359.97438 * 23 14 13 43 43 H 1.09005 * 117.49510 * 145.02428 * 23 14 13 44 44 H 1.09001 * 117.49885 * 214.98054 * 24 14 13 45 45 H 1.08999 * 117.49630 * 359.96996 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1564 0.4456 -1.2484 7 6 4.1555 0.4460 1.2502 8 6 4.1561 2.6096 0.0011 9 7 5.6210 2.6095 0.0011 10 6 6.2949 3.7766 0.0020 11 8 5.6870 4.8297 0.0024 12 7 7.6427 3.7767 0.0025 13 6 8.3752 5.0454 0.0096 14 6 9.8788 4.7659 0.0537 15 6 10.4469 4.0722 -1.1577 16 1 10.5529 2.9974 -1.1642 17 6 10.8310 4.8096 -2.2574 18 7 10.5862 6.1010 -2.3014 19 14 11.6993 3.9746 -3.6850 20 1 11.8541 2.5270 -3.3918 21 1 10.8952 4.1453 -4.9217 22 1 13.0384 4.5872 -3.8767 23 6 10.4955 4.4313 1.4134 24 6 10.7673 5.7900 0.7627 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 5.2464 0.4452 -1.2477 30 1 3.7930 -0.5820 -1.2483 31 1 3.7935 0.9593 -2.1385 32 1 3.7919 0.9600 2.1399 33 1 3.7921 -0.5816 1.2501 34 1 5.2454 0.4456 1.2503 35 1 3.7924 3.1232 0.8911 36 1 3.7930 3.1236 -0.8888 37 1 6.1060 1.7694 0.0011 38 1 8.1276 2.9366 0.0025 39 1 8.1366 5.6077 -0.8931 40 1 8.0877 5.6260 0.8861 41 1 10.7897 6.6063 -3.1041 42 1 9.8302 4.4107 2.2764 43 1 11.3125 3.7098 1.4316 44 1 11.7627 5.9618 0.3532 45 1 10.2806 6.6631 1.1974 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430915126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:15 Heat of formation + Delta-G solvation = -52.610017 kcal Electronic energy + Delta-G solvation = -24406.270812 eV Core-core repulsion = 20845.358731 eV Total energy + Delta-G solvation = -3560.912081 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58137 -39.22257 -36.93542 -36.19056 -34.96077 -33.23334 -32.62569 -31.94276 -27.69796 -27.40850 -26.90640 -25.74886 -24.79929 -22.46571 -21.17885 -20.31252 -19.73866 -19.34608 -18.05447 -16.82567 -16.50438 -16.00851 -15.71635 -15.35290 -15.06021 -14.65023 -14.31929 -14.20327 -14.06303 -13.80247 -13.47934 -13.21511 -12.99146 -12.65537 -12.61898 -12.51672 -12.44352 -12.20186 -11.69324 -11.54942 -11.29609 -11.12741 -11.01497 -10.89094 -10.51399 -10.24892 -9.97090 -9.69101 -9.47651 -9.45898 -8.94128 -8.77064 -8.48306 -8.22615 -7.92031 -6.05991 -4.14651 2.38430 2.76746 3.25411 3.34306 3.35710 3.38035 3.87564 4.25013 4.36004 4.40545 4.54500 4.73790 4.88369 4.92073 5.15492 5.21131 5.22231 5.38097 5.38429 5.40556 5.45517 5.51030 5.76417 5.80751 5.95836 6.00674 6.05728 6.10465 6.37260 6.50465 6.63726 6.71838 6.80032 6.89435 7.11045 7.12098 7.37918 7.44281 7.50981 7.63727 7.82967 7.93274 8.36179 8.71400 8.86253 9.27452 9.51972 11.01891 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.003118 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.260672 B = 8979.101736 C = 9488.670133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.735 5.735 3 C 0.527 3.473 4 O -0.529 6.529 5 C -0.095 4.095 6 C -0.142 4.142 7 C -0.141 4.141 8 C 0.167 3.833 9 N -0.753 5.753 10 C 0.698 3.302 11 O -0.600 6.600 12 N -0.720 5.720 13 C 0.182 3.818 14 C 0.028 3.972 15 C -0.499 4.499 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.873 5.873 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.401 0.599 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.391 0.609 38 H 0.395 0.605 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 -16.912 5.151 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.387 5.387 3 C 0.312 3.688 4 O -0.404 6.404 5 C -0.098 4.098 6 C -0.199 4.199 7 C -0.198 4.198 8 C 0.041 3.959 9 N -0.411 5.411 10 C 0.397 3.603 11 O -0.479 6.479 12 N -0.373 5.373 13 C 0.059 3.941 14 C 0.028 3.972 15 C -0.537 4.537 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.509 5.509 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.225 0.775 38 H 0.228 0.772 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.037 -14.931 5.050 21.785 hybrid contribution 1.109 -1.571 -0.900 2.123 sum -13.928 -16.502 4.150 21.989 Atomic orbital electron populations 1.21544 0.79545 1.02141 1.02490 1.45766 1.07693 1.08718 1.76570 1.20363 0.89417 0.83619 0.75393 1.90754 1.70197 1.31190 1.48237 1.21009 0.91906 0.98341 0.98574 1.21885 1.02516 0.99589 0.95923 1.21878 1.02418 0.99625 0.95891 1.20778 0.79025 0.92549 1.03514 1.45091 1.06298 1.07459 1.82285 1.16004 0.82361 0.83641 0.78247 1.90893 1.68188 1.30307 1.58488 1.45121 1.03306 1.11081 1.77789 1.20841 0.90727 0.82579 1.00000 1.19049 0.88978 0.99047 0.90172 1.20363 1.42073 0.92761 0.98515 0.92214 1.24988 0.95154 0.94680 0.98251 1.69983 1.46659 1.06471 1.27816 0.86584 0.79594 0.79664 0.82406 1.19773 1.21066 1.20984 1.23017 1.03963 1.00314 0.97505 1.22491 1.01679 0.90798 1.03654 0.92157 0.90701 0.92165 0.76480 0.90771 0.92020 0.91535 0.91623 0.92013 0.90856 0.91101 0.91039 0.77469 0.77216 0.91214 0.94752 0.92887 0.91651 0.90440 0.89844 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.74 -5.17 5.50 -67.07 -0.37 -5.54 16 3 C 0.53 5.70 6.48 -10.99 -0.07 5.63 16 4 O -0.53 -8.18 15.98 5.56 0.09 -8.09 16 5 C -0.09 -0.89 0.63 -155.66 -0.10 -0.99 16 6 C -0.14 -1.09 8.20 37.16 0.30 -0.78 16 7 C -0.14 -1.01 8.20 37.16 0.30 -0.70 16 8 C 0.17 2.32 3.85 -4.04 -0.02 2.30 16 9 N -0.75 -10.76 4.96 -65.23 -0.32 -11.08 16 10 C 0.70 13.73 8.57 -86.92 -0.74 12.98 16 11 O -0.60 -14.53 16.34 5.29 0.09 -14.45 16 12 N -0.72 -14.21 5.48 -65.23 -0.36 -14.57 16 13 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 14 C 0.03 0.67 1.38 -155.66 -0.21 0.45 16 15 C -0.50 -12.80 8.63 -34.44 -0.30 -13.09 16 16 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 17 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 18 N -0.87 -24.41 12.91 55.43 0.72 -23.69 16 19 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 24 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.40 1.62 7.67 -40.82 -0.31 1.31 16 29 H 0.07 0.55 6.86 -51.93 -0.36 0.20 16 30 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.29 7.57 -51.93 -0.39 -0.10 16 34 H 0.07 0.50 6.86 -51.93 -0.36 0.14 16 35 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 37 H 0.39 4.32 6.18 -40.82 -0.25 4.07 16 38 H 0.39 6.93 8.38 -40.82 -0.34 6.58 16 39 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 42 H 0.06 1.25 8.14 -51.94 -0.42 0.82 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -33.99 371.87 -7.84 -41.84 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.44 Total: 9.74 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.83 Total: 4.76 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.33 Total: -54.89 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.99 -7.84 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430915126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.775 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds