Wall clock time and date at job start Tue Mar 31 2020 03:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47507 * 2 1 4 4 H 1.09006 * 110.81195 * 51.66456 * 3 2 1 5 5 C 1.54881 * 110.75586 * 288.33027 * 3 2 1 6 6 C 1.54267 * 104.19534 * 203.74062 * 5 3 2 7 7 C 1.53870 * 106.59832 * 23.60738 * 6 5 3 8 8 C 1.54266 * 106.59995 * 0.02562 * 7 6 5 9 9 H 1.08997 * 110.48801 * 95.19634 * 8 7 6 10 10 C 1.53000 * 110.48454 * 217.71281 * 8 7 6 11 11 N 1.46499 * 109.46840 * 293.53990 * 10 8 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 8 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 12 17 17 O 1.21301 * 119.99843 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00038 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00068 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99634 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47288 * 90.00068 * 23 21 19 25 25 H 1.48503 * 109.47277 * 210.00245 * 23 21 19 26 26 H 1.48503 * 109.46943 * 330.00007 * 23 21 19 27 27 H 1.09001 * 109.47151 * 59.99719 * 1 2 3 28 28 H 1.08994 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47029 * 300.00135 * 1 2 3 30 30 H 1.09001 * 109.47510 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.47151 * 120.00281 * 2 1 3 32 32 H 1.08999 * 110.48708 * 85.06207 * 5 3 2 33 33 H 1.09002 * 110.48971 * 322.41525 * 5 3 2 34 34 H 1.09008 * 110.03016 * 264.32349 * 6 5 3 35 35 H 1.09004 * 110.07559 * 142.91765 * 6 5 3 36 36 H 1.08996 * 110.03660 * 240.71548 * 7 6 5 37 37 H 1.09003 * 110.06955 * 119.31069 * 7 6 5 38 38 H 1.09002 * 109.47398 * 53.54316 * 10 8 7 39 39 H 1.09001 * 109.47194 * 173.54497 * 10 8 7 40 40 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 41 41 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 42 42 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 43 43 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 44 44 H 0.96994 * 120.00172 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99654 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5734 2.0184 0.7992 5 6 1.7937 2.1118 -1.3748 6 6 2.8430 3.2408 -1.4394 7 6 3.9808 2.8385 -0.4850 8 6 3.5836 1.4787 0.1259 9 1 4.0341 0.6614 -0.4372 10 6 4.0023 1.4093 1.5958 11 7 5.4644 1.4161 1.6880 12 6 6.0638 1.3606 2.8938 13 8 5.3912 1.3045 3.9052 14 7 7.4090 1.3673 2.9786 15 6 8.0605 1.3076 4.2894 16 6 9.5565 1.3281 4.1081 17 8 10.0316 1.3872 2.9936 18 7 10.3664 1.2806 5.1843 19 6 11.7273 1.2998 5.0194 20 1 12.1503 1.3533 4.0271 21 6 12.5623 1.2514 6.1289 22 7 12.0475 1.1868 7.3363 23 14 14.4166 1.2783 5.9043 24 1 14.8962 2.6837 5.9146 25 1 15.0603 0.5274 7.0120 26 1 14.7673 0.6450 4.6076 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.7859 2.5244 -1.4231 33 1 1.9530 1.3964 -2.1815 34 1 2.3990 4.1822 -1.1153 35 1 3.2250 3.3388 -2.4556 36 1 4.0893 3.5844 0.3023 37 1 4.9154 2.7406 -1.0374 38 1 3.6006 2.2710 2.1291 39 1 3.6144 0.4932 2.0412 40 1 6.0010 1.4604 0.8812 41 1 7.9455 1.4124 2.1718 42 1 7.7548 2.1666 4.8866 43 1 7.7692 0.3889 4.7984 44 1 9.9865 1.2329 6.0755 45 1 12.6305 1.1527 8.1109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455249763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:38 Heat of formation + Delta-G solvation = -101.852649 kcal Electronic energy + Delta-G solvation = -23484.274589 eV Core-core repulsion = 19921.227187 eV Total energy + Delta-G solvation = -3563.047402 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01288 -39.06077 -38.11022 -34.76117 -34.33315 -33.60337 -33.38070 -31.36774 -30.19143 -27.93611 -27.44921 -24.98182 -24.05694 -22.72944 -20.89608 -20.16609 -20.06572 -19.54492 -18.33710 -17.92593 -16.35262 -15.78840 -15.64914 -15.37827 -15.18357 -14.76351 -14.55463 -14.38253 -14.31160 -13.91361 -13.59579 -13.43475 -13.38326 -13.16261 -12.52184 -12.28530 -12.15495 -11.88607 -11.61892 -11.53894 -11.42457 -11.12848 -11.09198 -10.88541 -10.82533 -10.70604 -10.67701 -10.45096 -10.30802 -9.97696 -9.62169 -9.10305 -8.60585 -8.54812 -8.08390 -6.49978 -3.91964 2.87485 3.12620 3.22866 3.28398 3.45468 3.77208 4.09439 4.18272 4.24161 4.31746 4.57433 4.80790 4.87773 4.92782 4.93417 5.06845 5.16950 5.18782 5.20446 5.22028 5.30168 5.42365 5.52042 5.60846 5.62668 5.73310 5.76772 5.81161 5.84180 5.91350 5.95717 5.97794 6.03766 6.09546 6.10689 6.18375 6.57126 6.79573 7.14877 7.47327 7.94065 8.28713 8.46972 8.84726 9.06156 9.41333 9.89302 10.66948 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.002185 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.008065 B =12810.810400 C =13240.933654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.080 0.920 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.123 4.123 8 C -0.101 4.101 9 H 0.082 0.918 10 C 0.149 3.851 11 N -0.748 5.748 12 C 0.704 3.296 13 O -0.599 6.599 14 N -0.725 5.725 15 C 0.129 3.871 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 0.687 -14.953 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.102 4.102 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.160 4.160 8 C -0.120 4.120 9 H 0.100 0.900 10 C 0.024 3.976 11 N -0.405 5.405 12 C 0.403 3.597 13 O -0.478 6.478 14 N -0.383 5.383 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.185 5.185 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.243 0.757 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.595 0.664 -14.530 25.214 hybrid contribution 1.255 0.049 -0.164 1.267 sum -19.340 0.714 -14.695 24.300 Atomic orbital electron populations 1.21773 0.95853 1.01524 1.01790 1.21563 0.95899 0.95915 1.02249 1.22142 0.93880 0.96291 0.97911 0.90143 1.22414 0.98779 0.97445 0.96892 1.22122 0.96068 0.98571 0.99507 1.22232 0.98390 0.96570 0.98843 1.22318 0.96160 0.98384 0.95166 0.89989 1.21193 0.78941 1.02123 0.95315 1.45049 1.07329 1.81046 1.07046 1.15878 0.81997 0.78022 0.83800 1.90902 1.63940 1.58417 1.34575 1.44775 1.04427 1.78778 1.10287 1.20772 0.91718 1.03060 0.84423 1.19781 0.87473 0.85422 0.85851 1.90489 1.76315 1.57251 1.24444 1.41789 1.06592 1.62574 1.07502 1.19725 0.80464 1.48075 0.95129 0.87703 1.25331 1.01040 0.96853 0.94578 1.69621 1.36643 1.49258 0.97966 0.85809 0.81654 0.78400 0.78127 1.20286 1.20812 1.19343 0.92780 0.92894 0.92704 0.91928 0.91654 0.91709 0.91583 0.91911 0.91956 0.91312 0.91705 0.91747 0.91762 0.77065 0.75659 0.90059 0.90060 0.77006 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.81 37.16 0.36 -0.55 16 2 C -0.12 -0.79 5.43 -26.73 -0.15 -0.93 16 3 C -0.08 -0.57 2.30 -88.62 -0.20 -0.77 16 4 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 5 C -0.12 -0.72 5.69 -25.08 -0.14 -0.87 16 6 C -0.13 -0.82 6.80 -25.61 -0.17 -0.99 16 7 C -0.12 -0.91 6.05 -25.62 -0.15 -1.07 16 8 C -0.10 -0.77 2.38 -88.95 -0.21 -0.99 16 9 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 10 C 0.15 1.56 4.98 -4.04 -0.02 1.54 16 11 N -0.75 -9.10 5.40 -65.22 -0.35 -9.45 16 12 C 0.70 11.69 8.57 -86.91 -0.74 10.95 16 13 O -0.60 -12.03 16.34 5.29 0.09 -11.95 16 14 N -0.73 -12.45 5.53 -66.41 -0.37 -12.81 16 15 C 0.13 2.45 6.15 -5.19 -0.03 2.41 16 16 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 17 O -0.60 -15.40 15.24 5.54 0.08 -15.32 16 18 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -24.03 13.05 55.50 0.72 -23.31 16 23 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 7.99 -51.93 -0.41 -0.02 16 31 H 0.06 0.48 7.77 -51.93 -0.40 0.08 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.39 7.93 -51.93 -0.41 -0.02 16 34 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 39 H 0.06 0.73 7.77 -51.93 -0.40 0.33 16 40 H 0.40 3.93 8.33 -40.82 -0.34 3.59 16 41 H 0.41 6.74 7.45 -40.82 -0.30 6.44 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -31.54 368.21 -8.69 -40.23 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.55 Total: 14.57 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.79 Total: 10.69 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.05 Total: -59.39 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.17 Total: -27.26 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.54 -8.69 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455249763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.620 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds