Wall clock time and date at job start Tue Mar 31 2020 03:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47507 * 2 1 4 4 H 1.09006 * 110.81195 * 51.66456 * 3 2 1 5 5 C 1.54881 * 110.75586 * 288.33027 * 3 2 1 6 6 C 1.54267 * 104.19534 * 203.74062 * 5 3 2 7 7 C 1.53870 * 106.59832 * 23.60738 * 6 5 3 8 8 C 1.54266 * 106.59995 * 0.02562 * 7 6 5 9 9 H 1.08997 * 110.48801 * 95.19634 * 8 7 6 10 10 C 1.53000 * 110.48454 * 217.71281 * 8 7 6 11 11 N 1.46499 * 109.46840 * 293.53990 * 10 8 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 8 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 12 17 17 O 1.21301 * 119.99843 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00038 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00068 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99634 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47288 * 90.00068 * 23 21 19 25 25 H 1.48503 * 109.47277 * 210.00245 * 23 21 19 26 26 H 1.48503 * 109.46943 * 330.00007 * 23 21 19 27 27 H 1.09001 * 109.47151 * 59.99719 * 1 2 3 28 28 H 1.08994 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47029 * 300.00135 * 1 2 3 30 30 H 1.09001 * 109.47510 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.47151 * 120.00281 * 2 1 3 32 32 H 1.08999 * 110.48708 * 85.06207 * 5 3 2 33 33 H 1.09002 * 110.48971 * 322.41525 * 5 3 2 34 34 H 1.09008 * 110.03016 * 264.32349 * 6 5 3 35 35 H 1.09004 * 110.07559 * 142.91765 * 6 5 3 36 36 H 1.08996 * 110.03660 * 240.71548 * 7 6 5 37 37 H 1.09003 * 110.06955 * 119.31069 * 7 6 5 38 38 H 1.09002 * 109.47398 * 53.54316 * 10 8 7 39 39 H 1.09001 * 109.47194 * 173.54497 * 10 8 7 40 40 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 41 41 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 42 42 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 43 43 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 44 44 H 0.96994 * 120.00172 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99654 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5734 2.0184 0.7992 5 6 1.7937 2.1118 -1.3748 6 6 2.8430 3.2408 -1.4394 7 6 3.9808 2.8385 -0.4850 8 6 3.5836 1.4787 0.1259 9 1 4.0341 0.6614 -0.4372 10 6 4.0023 1.4093 1.5958 11 7 5.4644 1.4161 1.6880 12 6 6.0638 1.3606 2.8938 13 8 5.3912 1.3045 3.9052 14 7 7.4090 1.3673 2.9786 15 6 8.0605 1.3076 4.2894 16 6 9.5565 1.3281 4.1081 17 8 10.0316 1.3872 2.9936 18 7 10.3664 1.2806 5.1843 19 6 11.7273 1.2998 5.0194 20 1 12.1503 1.3533 4.0271 21 6 12.5623 1.2514 6.1289 22 7 12.0475 1.1868 7.3363 23 14 14.4166 1.2783 5.9043 24 1 14.8962 2.6837 5.9146 25 1 15.0603 0.5274 7.0120 26 1 14.7673 0.6450 4.6076 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.7859 2.5244 -1.4231 33 1 1.9530 1.3964 -2.1815 34 1 2.3990 4.1822 -1.1153 35 1 3.2250 3.3388 -2.4556 36 1 4.0893 3.5844 0.3023 37 1 4.9154 2.7406 -1.0374 38 1 3.6006 2.2710 2.1291 39 1 3.6144 0.4932 2.0412 40 1 6.0010 1.4604 0.8812 41 1 7.9455 1.4124 2.1718 42 1 7.7548 2.1666 4.8866 43 1 7.7692 0.3889 4.7984 44 1 9.9865 1.2329 6.0755 45 1 12.6305 1.1527 8.1109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455249763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:37 Heat of formation + Delta-G solvation = -123.455869 kcal Electronic energy + Delta-G solvation = -23485.211375 eV Core-core repulsion = 19921.227187 eV Total energy + Delta-G solvation = -3563.984188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26453 -40.18568 -39.59691 -36.26799 -35.71812 -35.25452 -33.94319 -33.36752 -31.09615 -28.97483 -28.46147 -26.53449 -25.25149 -23.29185 -22.08944 -21.36877 -20.86686 -20.72468 -20.09221 -19.46546 -17.53285 -17.40663 -16.96516 -16.49605 -16.37195 -15.94590 -15.90046 -15.70247 -15.26843 -15.15819 -15.04740 -14.60950 -14.01931 -13.94525 -13.73697 -13.64057 -13.53867 -13.16442 -12.89853 -12.78938 -12.45256 -12.12395 -12.10353 -11.99031 -11.79125 -11.56604 -11.55944 -11.45342 -11.29879 -11.22497 -11.18596 -10.55288 -10.41977 -10.09869 -9.79189 -8.50568 -6.00843 1.36857 1.42801 1.54753 1.64067 1.90149 2.12778 2.29160 3.05260 3.16582 3.33029 3.60280 3.67095 3.77559 4.20374 4.23348 4.32118 4.33730 4.43695 4.46559 4.49076 4.55786 4.58983 4.67818 4.74032 4.83785 4.91195 4.95039 5.07245 5.14016 5.20582 5.27755 5.29630 5.31855 5.37075 5.39164 5.45294 5.49897 5.56286 5.62902 5.91904 5.97285 6.48456 7.03766 7.04412 7.43251 7.54516 7.94778 8.66350 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.002185 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.008065 B =12810.810400 C =13240.933654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.074 0.926 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.092 4.092 9 H 0.090 0.910 10 C 0.149 3.851 11 N -0.730 5.730 12 C 0.703 3.297 13 O -0.634 6.634 14 N -0.724 5.724 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.624 6.624 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.409 0.591 41 H 0.410 0.590 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.742 0.685 -16.089 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.100 4.100 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.162 4.162 7 C -0.161 4.161 8 C -0.111 4.111 9 H 0.108 0.892 10 C 0.025 3.975 11 N -0.386 5.386 12 C 0.402 3.598 13 O -0.516 6.516 14 N -0.382 5.382 15 C 0.013 3.987 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.213 4.213 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.245 0.755 41 H 0.248 0.752 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.945 0.666 -15.703 26.187 hybrid contribution 1.279 0.056 0.156 1.290 sum -19.666 0.722 -15.547 25.079 Atomic orbital electron populations 1.21765 0.95349 1.01757 1.01982 1.21550 0.96354 0.95611 1.02006 1.22122 0.92992 0.96523 0.98364 0.90737 1.22392 0.99040 0.97297 0.96331 1.22120 0.95777 0.98709 0.99565 1.22230 0.99154 0.95924 0.98762 1.22261 0.96892 0.98914 0.93020 0.89190 1.21300 0.77595 1.01259 0.97300 1.44974 1.08148 1.79350 1.06151 1.15997 0.81485 0.77791 0.84519 1.90879 1.64499 1.60100 1.36154 1.44687 1.04755 1.79112 1.09657 1.20574 0.88553 1.03932 0.85634 1.20409 0.89019 0.83487 0.84972 1.90466 1.77414 1.57916 1.25389 1.41839 1.06286 1.63322 1.08065 1.19740 0.81801 1.50218 0.94827 0.89527 1.26154 1.05258 0.95824 0.94054 1.69689 1.38235 1.49175 0.98523 0.84851 0.76212 0.78665 0.78147 1.19554 1.19676 1.19420 0.92053 0.92676 0.93048 0.91381 0.92674 0.91022 0.90975 0.91940 0.91253 0.92520 0.91169 0.92754 0.92546 0.75488 0.75224 0.89141 0.89131 0.76697 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 71.98 0.71 -0.91 16 2 C -0.12 -1.40 5.43 30.59 0.17 -1.24 16 3 C -0.08 -0.99 2.30 -9.50 -0.02 -1.01 16 4 H 0.07 1.02 8.06 -2.38 -0.02 1.00 16 5 C -0.11 -1.15 5.69 31.67 0.18 -0.97 16 6 C -0.12 -1.39 6.80 31.32 0.21 -1.18 16 7 C -0.12 -1.65 6.05 31.32 0.19 -1.46 16 8 C -0.09 -1.28 2.38 -9.71 -0.02 -1.30 16 9 H 0.09 1.16 8.05 -2.39 -0.02 1.14 16 10 C 0.15 3.03 4.98 86.38 0.43 3.46 16 11 N -0.73 -17.03 5.40 -478.52 -2.58 -19.61 16 12 C 0.70 22.86 8.57 179.05 1.53 24.40 16 13 O -0.63 -25.27 16.34 -4.00 -0.07 -25.34 16 14 N -0.72 -24.35 5.53 -482.28 -2.67 -27.02 16 15 C 0.14 5.32 6.15 85.63 0.53 5.84 16 16 C 0.43 20.20 7.85 87.66 0.69 20.89 16 17 O -0.62 -32.26 15.24 -3.09 -0.05 -32.31 16 18 N -0.56 -28.31 5.29 -306.97 -1.62 -29.94 16 19 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 20 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 23 Si 1.00 41.84 29.55 68.60 2.03 43.86 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H 0.06 0.57 7.65 -2.39 -0.02 0.55 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.74 7.99 -2.39 -0.02 0.72 16 31 H 0.05 0.77 7.77 -2.39 -0.02 0.75 16 32 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 33 H 0.07 0.68 7.93 -2.39 -0.02 0.66 16 34 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.91 7.77 -2.39 -0.02 0.89 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 1.24 8.05 -2.39 -0.02 1.22 16 39 H 0.06 1.26 7.77 -2.39 -0.02 1.24 16 40 H 0.41 7.50 8.33 -92.71 -0.77 6.72 16 41 H 0.41 13.29 7.45 -92.71 -0.69 12.60 16 42 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -66.56 368.21 0.00 -66.55 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -1.19 Total: 43.86 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 5.87 Total: 28.55 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -6.59 Total: -125.18 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -0.11 Total: -57.65 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -66.56 0.00 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455249763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.901 kcal (2) G-P(sol) polarization free energy of solvation -66.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds