Wall clock time and date at job start Tue Mar 31 2020 03:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47519 * 2 1 4 4 C 1.50703 * 109.46954 * 240.00393 * 2 1 3 5 5 H 1.08006 * 119.99658 * 241.34725 * 4 2 1 6 6 C 1.37876 * 120.00346 * 61.34765 * 4 2 1 7 7 N 1.31509 * 120.00423 * 193.98004 * 6 4 2 8 8 Si 1.86807 * 119.99751 * 13.97332 * 6 4 2 9 9 H 1.48492 * 109.46741 * 84.55176 * 8 6 4 10 10 H 1.48496 * 109.46841 * 204.55114 * 8 6 4 11 11 H 1.48493 * 109.47076 * 324.55292 * 8 6 4 12 12 C 1.52995 * 109.47327 * 120.00440 * 2 1 3 13 13 N 1.46505 * 109.47075 * 299.99802 * 12 2 1 14 14 C 1.34776 * 120.00016 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99931 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00062 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00167 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47238 * 179.97438 * 17 16 14 19 19 O 1.21280 * 119.99644 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00158 * 179.97438 * 18 17 16 21 21 C 1.46496 * 120.00043 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47233 * 180.02562 * 21 20 18 23 23 C 1.53001 * 117.49527 * 243.62135 * 22 21 20 24 24 C 1.52995 * 117.50046 * 174.99956 * 22 21 20 25 25 H 1.09001 * 109.46849 * 309.36193 * 1 2 3 26 26 H 1.08995 * 109.47404 * 69.36169 * 1 2 3 27 27 H 1.08995 * 109.47143 * 189.36633 * 1 2 3 28 28 H 1.08994 * 109.47336 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46833 * 300.00689 * 3 2 1 30 30 H 1.09004 * 109.46642 * 59.99729 * 3 2 1 31 31 H 0.96995 * 120.00236 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47425 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.47232 * 59.99895 * 12 2 1 34 34 H 0.96997 * 119.99500 * 359.97438 * 13 12 2 35 35 H 0.97005 * 119.99801 * 359.97438 * 16 14 13 36 36 H 1.09000 * 109.47210 * 59.99778 * 17 16 14 37 37 H 1.09005 * 109.46791 * 299.99940 * 17 16 14 38 38 H 0.97000 * 119.99641 * 0.02562 * 20 18 17 39 39 H 1.09011 * 109.46783 * 300.00018 * 21 20 18 40 40 H 1.09000 * 109.47421 * 59.99869 * 21 20 18 41 41 H 1.09004 * 115.55297 * 29.32290 * 22 21 20 42 42 H 1.08997 * 117.49927 * 359.97438 * 23 22 21 43 43 H 1.09005 * 117.49907 * 145.01743 * 23 22 21 44 44 H 1.09004 * 117.49668 * 214.97675 * 24 22 21 45 45 H 1.08998 * 117.50347 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6351 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9156 -0.9724 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4817 -2.7083 10 1 0.2469 1.5867 -3.9287 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6695 15 8 2.5768 -1.4795 3.7809 16 7 1.4282 0.1440 4.7700 17 6 1.7821 -0.3566 6.1005 18 6 1.1585 0.5254 7.1513 19 8 0.4843 1.4780 6.8213 20 7 1.3491 0.2550 8.4579 21 6 0.7424 1.1120 9.4794 22 6 1.1121 0.5894 10.8689 23 6 -0.0261 0.0927 11.7627 24 6 0.6700 1.4186 12.0763 25 1 -0.3633 0.6518 0.7946 26 1 -0.3634 0.3622 -0.9617 27 1 -0.3633 -1.0139 0.1672 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6972 -0.6298 -4.4268 32 1 3.1301 -0.7217 1.2489 33 1 1.6767 -1.7490 1.2491 34 1 0.9944 0.7581 2.3564 35 1 0.8702 0.9325 4.6810 36 1 2.8660 -0.3476 6.2156 37 1 1.4130 -1.3758 6.2152 38 1 1.8880 -0.5072 8.7218 39 1 1.1118 2.1312 9.3647 40 1 -0.3415 1.1033 9.3641 41 1 2.0687 0.0713 10.9372 42 1 -1.0382 0.1387 11.3609 43 1 0.1816 -0.7524 12.4191 44 1 1.3357 1.4458 12.9391 45 1 0.1161 2.3367 11.8808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458697433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:22 Heat of formation + Delta-G solvation = -56.663316 kcal Electronic energy + Delta-G solvation = -23583.336529 eV Core-core repulsion = 20022.248683 eV Total energy + Delta-G solvation = -3561.087845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40482 -40.56812 -38.60946 -38.35568 -35.49075 -35.24048 -34.95585 -33.37845 -30.00400 -28.01973 -27.73426 -27.07461 -26.12986 -23.24529 -22.10516 -22.01394 -21.44963 -20.89909 -19.80470 -18.07989 -17.98563 -17.55655 -17.14530 -17.02331 -16.90438 -16.32303 -15.87105 -15.42044 -15.20816 -14.99182 -14.88347 -14.77773 -14.40546 -14.36864 -14.13252 -13.95809 -13.74170 -13.53813 -12.88355 -12.40406 -12.37200 -12.36370 -12.12930 -11.94298 -11.74562 -11.53722 -11.39280 -11.17893 -11.04004 -10.99602 -10.59918 -10.41415 -10.37970 -10.13244 -9.73410 -8.28211 -6.29322 1.38502 1.39017 1.43922 1.51426 1.51910 2.16827 2.20747 2.36238 2.87687 3.07626 3.37401 3.63533 3.69091 3.99176 4.09280 4.10055 4.26180 4.35187 4.38396 4.38761 4.43545 4.64846 4.71724 4.76099 4.82018 4.86256 4.88229 4.96851 5.04532 5.08798 5.15843 5.20229 5.26503 5.34097 5.39495 5.45426 5.57539 5.74124 5.81044 6.00064 6.33288 6.39921 6.74649 7.05425 7.10802 7.35124 7.58274 8.88687 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.042971 B = 0.002271 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.442416 B =12327.663468 C =12694.933699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 C -0.146 4.146 4 C -0.514 4.514 5 H 0.030 0.970 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.944 3.056 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.206 1.206 12 C 0.177 3.823 13 N -0.727 5.727 14 C 0.704 3.296 15 O -0.634 6.634 16 N -0.731 5.731 17 C 0.120 3.880 18 C 0.515 3.485 19 O -0.573 6.573 20 N -0.708 5.708 21 C 0.151 3.849 22 C -0.171 4.171 23 C -0.178 4.178 24 C -0.171 4.171 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.407 0.593 35 H 0.412 0.588 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.420 0.580 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 6.513 32.165 33.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.025 3.975 3 C -0.203 4.203 4 C -0.553 4.553 5 H 0.049 0.951 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.245 1.245 11 H -0.130 1.130 12 C 0.053 3.947 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.515 6.515 16 N -0.390 5.390 17 C -0.007 4.007 18 C 0.302 3.698 19 O -0.453 6.453 20 N -0.361 5.361 21 C 0.028 3.972 22 C -0.190 4.190 23 C -0.215 4.215 24 C -0.209 4.209 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.244 0.756 35 H 0.249 0.751 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.258 0.742 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.796 6.266 31.890 32.721 hybrid contribution -0.173 0.603 -0.893 1.091 sum -3.969 6.869 30.997 31.996 Atomic orbital electron populations 1.22208 0.96141 1.00632 1.00749 1.18680 0.93764 0.93130 0.91931 1.22286 1.01048 0.96856 1.00111 1.21003 1.32802 1.11070 0.90384 0.95134 1.25840 0.95467 1.01510 0.95290 1.70105 1.50741 1.38206 0.99360 0.86338 0.79365 0.80086 0.76835 1.20989 1.24533 1.13025 1.20912 0.97231 0.94624 0.81959 1.45125 1.55988 1.33331 1.03767 1.15950 0.80153 0.82528 0.81028 1.90884 1.44721 1.29310 1.86612 1.44642 1.57021 1.33772 1.03573 1.20965 1.01938 0.97910 0.79912 1.20581 0.80097 0.84819 0.84343 1.90702 1.41303 1.31322 1.81954 1.45740 1.53405 1.32548 1.04412 1.20906 0.97591 0.93708 0.85039 1.22421 1.00656 1.05855 0.90045 1.23166 0.96930 0.98469 1.02963 1.23050 1.03780 0.95557 0.98468 0.91854 0.93663 0.93960 0.93345 0.94769 0.91038 0.92716 0.93834 0.94040 0.75627 0.75060 0.87359 0.87423 0.74235 0.91707 0.92074 0.85627 0.88880 0.87592 0.87345 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 7.53 71.98 0.54 -4.87 16 2 C 0.03 1.12 0.50 -52.93 -0.03 1.10 16 3 C -0.15 -5.58 7.52 71.98 0.54 -5.04 16 4 C -0.51 -28.51 8.62 25.60 0.22 -28.29 16 5 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 6 C 0.02 0.93 5.32 84.66 0.45 1.38 16 7 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 8 Si 0.94 43.30 22.79 68.60 1.56 44.86 16 9 H -0.28 -12.72 7.10 99.48 0.71 -12.01 16 10 H -0.32 -14.93 7.11 99.48 0.71 -14.22 16 11 H -0.21 -8.06 4.65 99.48 0.46 -7.60 16 12 C 0.18 7.18 4.49 86.38 0.39 7.56 16 13 N -0.73 -23.24 5.01 -478.53 -2.40 -25.63 16 14 C 0.70 22.75 8.57 179.06 1.53 24.29 16 15 O -0.63 -25.37 16.34 -3.99 -0.07 -25.43 16 16 N -0.73 -17.70 5.53 -482.30 -2.67 -20.36 16 17 C 0.12 2.20 6.15 85.63 0.53 2.73 16 18 C 0.52 9.12 7.90 87.66 0.69 9.82 16 19 O -0.57 -14.41 15.67 -3.03 -0.05 -14.46 16 20 N -0.71 -7.84 5.56 -463.06 -2.57 -10.41 16 21 C 0.15 1.70 5.95 86.38 0.51 2.21 16 22 C -0.17 -1.17 5.85 -10.80 -0.06 -1.23 16 23 C -0.18 -1.19 10.18 30.59 0.31 -0.88 16 24 C -0.17 -1.10 10.25 30.59 0.31 -0.78 16 25 H 0.06 1.93 7.13 -2.39 -0.02 1.91 16 26 H 0.04 1.84 4.30 -2.39 -0.01 1.83 16 27 H 0.04 1.66 8.12 -2.39 -0.02 1.64 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.03 1.36 2.25 -2.39 -0.01 1.35 16 30 H 0.07 2.14 6.86 -2.38 -0.02 2.12 16 31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 10.78 6.27 -92.71 -0.58 10.20 16 35 H 0.41 9.24 7.45 -92.70 -0.69 8.55 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.42 2.17 8.40 -92.71 -0.78 1.39 16 39 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.06 0.83 7.88 -2.39 -0.02 0.81 16 41 H 0.13 0.53 8.04 -2.39 -0.02 0.51 16 42 H 0.09 0.71 8.03 -2.39 -0.02 0.69 16 43 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -75.42 356.85 -1.21 -76.63 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -1.27 Total: 25.36 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.95 Total: 8.00 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -7.34 Total: -114.96 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.11 Total: -39.89 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.56 Total: 44.86 kcal Total: -75.42 -1.21 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458697433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.964 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds