Wall clock time and date at job start Tue Mar 31 2020 04:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47591 * 2 1 4 4 N 1.46499 * 109.47022 * 120.00175 * 2 1 3 5 5 C 1.34779 * 120.00488 * 155.00220 * 4 2 1 6 6 O 1.21279 * 119.99582 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00272 * 179.97438 * 5 4 2 8 8 N 1.46509 * 109.47308 * 179.97438 * 7 5 4 9 9 C 1.34773 * 119.99865 * 180.02562 * 8 7 5 10 10 O 1.21585 * 120.00642 * 5.07018 * 9 8 7 11 11 N 1.34775 * 119.99548 * 185.07796 * 9 8 7 12 12 C 1.46924 * 120.63159 * 174.96204 * 11 9 8 13 13 C 1.53200 * 108.89456 * 233.55608 * 12 11 9 14 14 C 1.53074 * 109.29270 * 305.57637 * 13 12 11 15 15 C 1.50697 * 109.43927 * 181.23706 * 14 13 12 16 16 H 1.08005 * 119.99998 * 239.79855 * 15 14 13 17 17 C 1.37872 * 120.00220 * 59.79272 * 15 14 13 18 18 N 1.31509 * 119.99991 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47490 * 90.00214 * 19 17 15 21 21 H 1.48507 * 109.47351 * 210.00230 * 19 17 15 22 22 H 1.48501 * 109.47371 * 330.00209 * 19 17 15 23 23 C 1.53041 * 109.65925 * 61.15251 * 14 13 12 24 24 C 1.46925 * 120.63097 * 354.97832 * 11 9 8 25 25 H 1.08998 * 109.47364 * 300.00037 * 1 2 3 26 26 H 1.09006 * 109.46799 * 59.99923 * 1 2 3 27 27 H 1.08996 * 109.46864 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47364 * 239.99963 * 2 1 3 29 29 H 1.09001 * 109.47128 * 300.00368 * 3 2 1 30 30 H 1.09007 * 109.46556 * 59.99606 * 3 2 1 31 31 H 1.08999 * 109.47760 * 179.97438 * 3 2 1 32 32 H 0.96998 * 120.00128 * 334.99573 * 4 2 1 33 33 H 1.09005 * 109.47145 * 59.99823 * 7 5 4 34 34 H 1.09003 * 109.47369 * 299.99974 * 7 5 4 35 35 H 0.97000 * 119.99583 * 0.02562 * 8 7 5 36 36 H 1.09003 * 109.58820 * 353.41568 * 12 11 9 37 37 H 1.09006 * 109.59033 * 113.69984 * 12 11 9 38 38 H 1.08999 * 109.49598 * 65.38684 * 13 12 11 39 39 H 1.09001 * 109.49618 * 185.48286 * 13 12 11 40 40 H 1.08997 * 109.34585 * 301.12589 * 14 13 12 41 41 H 0.97005 * 120.00365 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.49614 * 178.74639 * 23 14 13 43 43 H 1.08998 * 109.52116 * 58.66541 * 23 14 13 44 44 H 1.08998 * 109.59207 * 246.15572 * 24 11 9 45 45 H 1.09002 * 109.59022 * 6.44498 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1945 6 8 3.9355 -1.1995 0.2025 7 6 3.7427 -1.9691 2.4251 8 7 5.0855 -2.4969 2.1704 9 6 5.7375 -3.1746 3.1359 10 8 5.1774 -3.4282 4.1848 11 7 7.0104 -3.5711 2.9385 12 6 7.7707 -4.2129 4.0196 13 6 9.0886 -3.4569 4.2157 14 6 9.8319 -3.3813 2.8797 15 6 11.1431 -2.6647 3.0752 16 1 11.3496 -1.7572 2.5271 17 6 12.0793 -3.1675 3.9537 18 7 11.8282 -4.2727 4.6207 19 14 13.7049 -2.2796 4.1954 20 1 13.5699 -1.2899 5.2942 21 1 14.7601 -3.2649 4.5435 22 1 14.0772 -1.5782 2.9405 23 6 8.9818 -2.6199 1.8600 24 6 7.6642 -3.3695 1.6383 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.4622 -0.7387 1.9894 33 1 3.0702 -2.7911 2.6704 34 1 3.7795 -1.2684 3.2592 35 1 5.5053 -2.3585 1.3070 36 1 7.1910 -4.1821 4.9422 37 1 7.9799 -5.2492 3.7540 38 1 8.8798 -2.4480 4.5714 39 1 9.7033 -3.9812 4.9475 40 1 10.0207 -4.3905 2.5139 41 1 12.4869 -4.6266 5.2386 42 1 9.5229 -2.5483 0.9165 43 1 8.7719 -1.6186 2.2359 44 1 7.8670 -4.3362 1.1774 45 1 7.0133 -2.7843 0.9887 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540990559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:30 Heat of formation + Delta-G solvation = -73.636340 kcal Electronic energy + Delta-G solvation = -24374.343856 eV Core-core repulsion = 20812.520005 eV Total energy + Delta-G solvation = -3561.823851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45126 -39.58195 -36.96155 -36.36380 -34.30090 -33.45809 -32.06015 -31.00898 -30.12097 -27.65097 -27.62757 -25.85371 -23.02676 -22.35041 -21.74315 -20.83865 -20.17329 -19.10840 -17.94762 -16.88967 -16.55975 -16.24292 -16.00697 -15.66835 -14.94626 -14.59798 -14.51120 -14.38493 -13.70661 -13.53492 -13.45820 -13.00869 -12.96167 -12.77338 -12.69164 -12.54931 -12.39296 -12.08733 -11.79982 -11.76164 -11.38208 -11.08969 -10.91025 -10.63032 -10.38374 -10.19838 -10.02633 -9.80766 -9.51801 -9.51050 -9.15488 -9.03432 -8.85545 -8.33506 -7.86407 -5.98656 -4.05139 2.29546 2.54891 3.20464 3.31013 3.37987 3.40833 3.55745 4.24773 4.31519 4.44009 4.52902 4.62840 4.81881 5.14856 5.22136 5.23157 5.27322 5.30975 5.36434 5.47220 5.50381 5.67408 5.83464 5.87031 5.89284 6.09027 6.12343 6.30642 6.45876 6.50806 6.55936 6.67343 6.86330 7.02350 7.10889 7.18576 7.27785 7.53002 7.74489 7.84483 7.97094 8.09663 8.32145 8.44174 8.93050 8.98196 9.59677 11.06720 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002821 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.451431 B = 9924.037220 C =10521.337516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.725 5.725 5 C 0.511 3.489 6 O -0.534 6.534 7 C 0.122 3.878 8 N -0.743 5.743 9 C 0.708 3.292 10 O -0.604 6.604 11 N -0.615 5.615 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.403 0.597 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.104 0.896 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.788 6.718 -7.658 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.223 4.223 4 N -0.378 5.378 5 C 0.297 3.703 6 O -0.410 6.410 7 C -0.007 4.007 8 N -0.406 5.406 9 C 0.410 3.590 10 O -0.484 6.484 11 N -0.351 5.351 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.012 4.012 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.237 0.763 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.578 6.458 -7.498 23.739 hybrid contribution 0.826 0.617 0.128 1.039 sum -20.752 7.076 -7.371 23.131 Atomic orbital electron populations 1.22081 0.93968 1.02740 1.03047 1.20967 0.94027 0.93135 0.88713 1.22200 1.02381 0.95615 1.02153 1.46014 1.17717 1.56943 1.17145 1.20700 0.81523 0.78379 0.89675 1.90707 1.55926 1.59482 1.34906 1.20780 0.85716 0.99098 0.95097 1.44945 1.17131 1.60688 1.17820 1.15736 0.81522 0.78582 0.83167 1.90857 1.67412 1.62925 1.27158 1.47422 1.10474 1.62586 1.14609 1.21787 0.93374 0.95726 0.88610 1.22041 0.92767 0.98769 1.02597 1.18634 0.92419 0.95646 0.90274 1.21191 1.00134 1.09761 1.23953 0.92758 1.24962 0.98320 0.94936 0.95792 1.69843 1.35056 1.20645 1.27384 0.86621 0.83646 0.79445 0.78424 1.20769 1.21272 1.20006 1.22003 0.93969 0.99210 1.00944 1.21758 0.95391 1.00267 0.83821 0.91941 0.90846 0.91875 0.89303 0.91563 0.92392 0.91882 0.76267 0.88663 0.88740 0.75303 0.90576 0.92506 0.94394 0.87774 0.95457 0.92974 0.92108 0.92895 0.91807 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.38 37.16 0.35 -0.33 16 2 C 0.14 0.93 3.18 -67.93 -0.22 0.71 16 3 C -0.17 -1.15 9.48 37.16 0.35 -0.80 16 4 N -0.73 -5.25 5.08 -53.81 -0.27 -5.53 16 5 C 0.51 5.49 7.86 -10.99 -0.09 5.41 16 6 O -0.53 -7.61 15.33 5.56 0.09 -7.53 16 7 C 0.12 1.39 6.16 -5.19 -0.03 1.36 16 8 N -0.74 -11.13 5.44 -66.41 -0.36 -11.49 16 9 C 0.71 13.15 8.30 -86.92 -0.72 12.43 16 10 O -0.60 -12.73 15.79 5.29 0.08 -12.65 16 11 N -0.61 -11.67 2.97 -178.49 -0.53 -12.20 16 12 C 0.13 2.62 6.41 -3.71 -0.02 2.59 16 13 C -0.12 -2.90 5.16 -26.59 -0.14 -3.03 16 14 C 0.05 1.18 2.06 -91.71 -0.19 0.99 16 15 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.99 11.30 55.43 0.63 -24.36 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 24 C 0.11 1.91 6.43 -3.71 -0.02 1.89 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 1.81 8.60 -40.82 -0.35 1.46 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.41 5.99 4.89 -40.82 -0.20 5.79 16 36 H 0.08 1.59 7.03 -51.93 -0.37 1.23 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.94 5.56 -51.93 -0.29 0.65 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -32.42 360.11 -8.60 -41.02 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.37 Total: 5.10 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.26 Total: 6.05 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.54 Total: -53.58 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.42 -8.60 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540990559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.619 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds