Wall clock time and date at job start Tue Mar 31 2020 03:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46900 * 90.00436 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00310 * 9 7 5 12 12 H 1.48500 * 109.47001 * 330.00467 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 O 1.21281 * 120.00256 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99959 * 179.97438 * 19 18 17 22 22 C 1.47023 * 125.64664 * 359.69010 * 21 19 18 23 23 C 1.54317 * 107.27138 * 180.96973 * 22 21 19 24 24 C 1.55152 * 102.86841 * 22.52465 * 23 22 21 25 25 C 1.47426 * 125.64960 * 179.97438 * 21 19 18 26 26 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 27 27 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 28 28 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 29 29 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 30 30 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 31 31 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 33 33 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 34 34 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 35 35 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 37 37 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 38 38 H 1.08997 * 109.88119 * 300.50743 * 22 21 19 39 39 H 1.08997 * 109.88486 * 61.68178 * 22 21 19 40 40 H 1.09006 * 110.92294 * 264.10469 * 23 22 21 41 41 H 1.09002 * 110.59026 * 140.78663 * 23 22 21 42 42 H 1.09004 * 111.00421 * 206.23170 * 24 23 22 43 43 H 1.08998 * 111.00586 * 82.37722 * 24 23 22 44 44 H 1.09007 * 110.36181 * 274.67354 * 25 21 19 45 45 H 1.08994 * 110.36852 * 36.88210 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4371 2.1156 2.0940 11 1 6.4348 -0.3083 2.1658 12 1 6.6135 0.8414 0.0382 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 8 0.5767 8.1192 -2.4261 21 7 -0.1880 8.3830 -4.4920 22 6 -0.6010 7.9020 -5.8185 23 6 -1.0077 9.1381 -6.6479 24 6 -0.2570 10.2943 -5.9358 25 6 -0.3353 9.8494 -4.4539 26 1 -0.3632 0.4417 0.9280 27 1 -0.3634 0.5828 -0.8464 28 1 -0.3634 -1.0244 -0.0813 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8229 -0.0595 2.9545 32 1 2.2975 1.8656 -1.9983 33 1 0.8734 3.7759 -0.2619 34 1 2.5415 3.9598 -0.8553 35 1 1.0730 6.0711 -1.6605 36 1 1.0382 5.8958 -4.4792 37 1 -0.6296 5.7127 -3.8849 38 1 0.2294 7.3865 -6.3009 39 1 -1.4517 7.2278 -5.7200 40 1 -2.0855 9.2960 -6.6083 41 1 -0.6695 9.0361 -7.6791 42 1 -0.7700 11.2442 -6.0860 43 1 0.7781 10.3536 -6.2721 44 1 -1.2998 10.1227 -4.0259 45 1 0.4748 10.2972 -3.8784 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563364617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:37 Heat of formation + Delta-G solvation = -74.093538 kcal Electronic energy + Delta-G solvation = -23802.019080 eV Core-core repulsion = 20240.175404 eV Total energy + Delta-G solvation = -3561.843677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53242 -39.15995 -37.74159 -35.92630 -34.24116 -32.45964 -32.23260 -31.06994 -29.72352 -28.39023 -26.76181 -24.73983 -23.57329 -22.38232 -21.66373 -20.22301 -19.73270 -19.49353 -17.60295 -17.10964 -16.81451 -16.41030 -15.94591 -15.62566 -14.97411 -14.69114 -14.50254 -13.99174 -13.87887 -13.83428 -13.55703 -13.22615 -13.06468 -12.77027 -12.58958 -12.40690 -11.93645 -11.86064 -11.73415 -11.70361 -11.27428 -11.18789 -11.13581 -10.86006 -10.65052 -10.26267 -10.14582 -9.76113 -9.53796 -9.30537 -9.11378 -9.04152 -9.00217 -8.37037 -7.25330 -5.99314 -4.12878 2.23943 2.42299 3.03261 3.27601 3.35093 3.37827 3.40028 3.92579 4.05240 4.37316 4.40005 4.40548 4.74815 4.85820 5.06460 5.13653 5.15649 5.22360 5.24790 5.33530 5.36254 5.40486 5.46357 5.55100 5.62862 5.83723 6.00414 6.19548 6.43963 6.46011 6.59261 6.77834 7.04107 7.13536 7.25349 7.44040 7.57272 7.68942 7.74453 7.79901 8.10155 8.13566 8.31723 8.53903 8.67186 8.99759 9.54950 11.00580 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.002623 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.070883 B =10673.121381 C =11328.299765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.052 3.948 15 C 0.517 3.483 16 O -0.529 6.529 17 N -0.731 5.731 18 C 0.109 3.891 19 C 0.526 3.474 20 O -0.533 6.533 21 N -0.620 5.620 22 C 0.094 3.906 23 C -0.132 4.132 24 C -0.135 4.135 25 C 0.104 3.896 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.337 0.663 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 18.525 -15.787 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.081 4.081 15 C 0.304 3.696 16 O -0.404 6.404 17 N -0.389 5.389 18 C -0.019 4.019 19 C 0.314 3.686 20 O -0.410 6.410 21 N -0.356 5.356 22 C -0.029 4.029 23 C -0.170 4.170 24 C -0.173 4.173 25 C -0.018 4.018 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.730 18.000 -15.556 25.704 hybrid contribution 2.060 0.564 0.501 2.194 sum -7.670 18.564 -15.056 25.102 Atomic orbital electron populations 1.21726 0.98976 0.98603 1.00409 1.21478 0.92183 0.98936 1.01730 1.19195 0.92912 0.91497 0.85640 0.94861 1.21873 0.92697 1.38581 1.05581 0.92795 1.24929 0.97972 0.94883 0.95676 1.69875 1.34855 1.38088 1.09375 0.86641 0.85977 0.77538 0.78112 1.20747 1.21139 1.19983 1.60627 1.55947 1.03399 1.10299 1.21640 1.00607 0.92582 0.93306 1.21261 0.76867 0.80612 0.90841 1.90652 1.49693 1.61366 1.38701 1.45866 1.68968 1.08246 1.15851 1.20907 1.02082 0.88696 0.90204 1.20360 0.76431 0.89045 0.82737 1.90721 1.49085 1.74878 1.26304 1.48435 1.65517 1.07981 1.13619 1.22161 1.00415 0.97587 0.82744 1.22643 1.01152 0.93764 0.99406 1.22809 1.01629 0.98695 0.94137 1.22261 1.02295 0.79889 0.97340 0.94605 0.92958 0.95610 0.94966 0.89084 0.92831 0.84588 0.88924 0.92246 0.75231 0.88734 0.88661 0.90747 0.90737 0.90267 0.89686 0.89592 0.90412 0.91229 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.85 37.16 0.37 -2.63 16 2 C -0.10 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.36 1.97 -68.87 -0.14 5.22 16 4 H 0.03 0.90 7.70 -51.93 -0.40 0.50 16 5 C -0.55 -14.75 8.47 -34.44 -0.29 -15.04 16 6 H 0.05 1.44 7.73 -52.48 -0.41 1.04 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.67 -14.77 5.17 -109.22 -0.56 -15.34 16 14 C 0.05 0.97 5.99 -4.98 -0.03 0.94 16 15 C 0.52 8.99 7.88 -10.99 -0.09 8.90 16 16 O -0.53 -10.69 16.32 5.56 0.09 -10.60 16 17 N -0.73 -10.35 5.53 -61.48 -0.34 -10.69 16 18 C 0.11 1.27 5.35 -5.20 -0.03 1.24 16 19 C 0.53 6.13 7.92 -10.99 -0.09 6.04 16 20 O -0.53 -7.97 15.92 5.56 0.09 -7.88 16 21 N -0.62 -5.40 3.33 -170.51 -0.57 -5.96 16 22 C 0.09 0.53 6.48 -3.07 -0.02 0.51 16 23 C -0.13 -0.49 6.95 -24.90 -0.17 -0.67 16 24 C -0.13 -0.58 7.08 -24.58 -0.17 -0.75 16 25 C 0.10 0.75 6.91 -2.52 -0.02 0.73 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.11 7.64 -51.93 -0.40 0.72 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.34 7.62 8.29 -39.29 -0.33 7.30 16 33 H 0.09 1.66 7.92 -51.93 -0.41 1.25 16 34 H 0.06 1.12 8.11 -51.92 -0.42 0.70 16 35 H 0.41 5.60 7.44 -40.82 -0.30 5.30 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -32.34 368.84 -8.64 -40.98 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.60 Total: 8.52 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.92 Total: 3.56 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.85 Total: -56.25 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.34 -8.64 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563364617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.111 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds