Wall clock time and date at job start Tue Mar 31 2020 03:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46900 * 90.00436 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00310 * 9 7 5 12 12 H 1.48500 * 109.47001 * 330.00467 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 O 1.21281 * 120.00256 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99959 * 179.97438 * 19 18 17 22 22 C 1.47023 * 125.64664 * 359.69010 * 21 19 18 23 23 C 1.54317 * 107.27138 * 180.96973 * 22 21 19 24 24 C 1.55152 * 102.86841 * 22.52465 * 23 22 21 25 25 C 1.47426 * 125.64960 * 179.97438 * 21 19 18 26 26 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 27 27 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 28 28 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 29 29 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 30 30 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 31 31 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 33 33 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 34 34 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 35 35 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 37 37 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 38 38 H 1.08997 * 109.88119 * 300.50743 * 22 21 19 39 39 H 1.08997 * 109.88486 * 61.68178 * 22 21 19 40 40 H 1.09006 * 110.92294 * 264.10469 * 23 22 21 41 41 H 1.09002 * 110.59026 * 140.78663 * 23 22 21 42 42 H 1.09004 * 111.00421 * 206.23170 * 24 23 22 43 43 H 1.08998 * 111.00586 * 82.37722 * 24 23 22 44 44 H 1.09007 * 110.36181 * 274.67354 * 25 21 19 45 45 H 1.08994 * 110.36852 * 36.88210 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4371 2.1156 2.0940 11 1 6.4348 -0.3083 2.1658 12 1 6.6135 0.8414 0.0382 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 8 0.5767 8.1192 -2.4261 21 7 -0.1880 8.3830 -4.4920 22 6 -0.6010 7.9020 -5.8185 23 6 -1.0077 9.1381 -6.6479 24 6 -0.2570 10.2943 -5.9358 25 6 -0.3353 9.8494 -4.4539 26 1 -0.3632 0.4417 0.9280 27 1 -0.3634 0.5828 -0.8464 28 1 -0.3634 -1.0244 -0.0813 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8229 -0.0595 2.9545 32 1 2.2975 1.8656 -1.9983 33 1 0.8734 3.7759 -0.2619 34 1 2.5415 3.9598 -0.8553 35 1 1.0730 6.0711 -1.6605 36 1 1.0382 5.8958 -4.4792 37 1 -0.6296 5.7127 -3.8849 38 1 0.2294 7.3865 -6.3009 39 1 -1.4517 7.2278 -5.7200 40 1 -2.0855 9.2960 -6.6083 41 1 -0.6695 9.0361 -7.6791 42 1 -0.7700 11.2442 -6.0860 43 1 0.7781 10.3536 -6.2721 44 1 -1.2998 10.1227 -4.0259 45 1 0.4748 10.2972 -3.8784 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563364617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:37 Heat of formation + Delta-G solvation = -97.271600 kcal Electronic energy + Delta-G solvation = -23803.024156 eV Core-core repulsion = 20240.175404 eV Total energy + Delta-G solvation = -3562.848753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42784 -40.41749 -38.51163 -37.76623 -35.48660 -34.37218 -33.03111 -32.80265 -30.36882 -29.57250 -28.37557 -26.32165 -24.54203 -24.02225 -22.08899 -21.56997 -21.37952 -20.51262 -18.90186 -18.47799 -17.83125 -17.51359 -17.23311 -16.75547 -16.55460 -16.21751 -15.54551 -15.45819 -15.16030 -14.73799 -14.47345 -14.36389 -14.21353 -13.98413 -13.70832 -13.62785 -13.35553 -13.22775 -13.07878 -13.03571 -12.72668 -12.51786 -12.20739 -12.15046 -12.07344 -11.59864 -11.57718 -11.48940 -11.20468 -11.08808 -10.82065 -10.45005 -10.24695 -9.79039 -9.08899 -8.05278 -6.27492 1.34360 1.39355 1.41614 1.50557 1.59350 1.62813 2.26929 2.41492 3.14992 3.26761 3.65703 3.72846 3.81002 3.94278 4.03822 4.22616 4.29665 4.32052 4.45025 4.47321 4.64197 4.64793 4.65144 4.78931 4.84220 4.93291 4.94313 4.98213 5.11325 5.16617 5.19785 5.26818 5.37065 5.43778 5.51081 5.62112 5.76704 6.07221 6.17152 6.28331 6.30455 6.45427 6.74886 6.87535 6.96993 7.20756 7.43841 8.91602 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.002623 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.070883 B =10673.121381 C =11328.299765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.562 4.562 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.670 5.670 14 C 0.050 3.950 15 C 0.527 3.473 16 O -0.558 6.558 17 N -0.720 5.720 18 C 0.110 3.890 19 C 0.524 3.476 20 O -0.575 6.575 21 N -0.616 5.616 22 C 0.083 3.917 23 C -0.124 4.124 24 C -0.126 4.126 25 C 0.095 3.905 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.263 0.737 32 H 0.333 0.667 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 19.601 -17.526 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.028 0.972 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.300 5.300 14 C -0.083 4.083 15 C 0.314 3.686 16 O -0.436 6.436 17 N -0.376 5.376 18 C -0.017 4.017 19 C 0.313 3.687 20 O -0.456 6.456 21 N -0.350 5.350 22 C -0.039 4.039 23 C -0.162 4.162 24 C -0.164 4.164 25 C -0.027 4.027 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.252 0.748 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.136 19.128 -17.342 27.738 hybrid contribution 2.133 0.311 0.996 2.374 sum -8.004 19.439 -16.346 26.630 Atomic orbital electron populations 1.21581 0.96543 0.99978 1.00365 1.21363 0.94345 0.98299 1.00084 1.18989 0.91883 0.91724 0.86028 0.97221 1.22146 0.93870 1.38530 1.05592 0.93153 1.25642 1.02076 0.94634 0.95461 1.69992 1.36420 1.38586 1.09742 0.85672 0.81010 0.77586 0.78031 1.20251 1.20818 1.19708 1.60541 1.55366 1.05302 1.08760 1.21663 1.00978 0.90903 0.94715 1.20789 0.76715 0.81427 0.89712 1.90642 1.51352 1.62238 1.39328 1.45703 1.67749 1.07169 1.16983 1.21053 1.02805 0.88808 0.89048 1.20304 0.76518 0.89079 0.82844 1.90700 1.51377 1.75446 1.28036 1.48550 1.63774 1.08665 1.13975 1.22468 1.01049 0.98927 0.81445 1.22668 1.01689 0.92117 0.99727 1.22799 1.02085 0.99781 0.91720 1.22453 1.01842 0.78922 0.99444 0.94704 0.92802 0.93547 0.95555 0.91629 0.92778 0.85037 0.88252 0.92267 0.74837 0.87616 0.87500 0.90016 0.89901 0.89303 0.87955 0.87683 0.90474 0.90825 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 9.85 71.98 0.71 -4.66 16 2 C -0.10 -5.05 5.45 30.60 0.17 -4.88 16 3 C 0.22 11.20 1.97 44.17 0.09 11.29 16 4 H 0.01 0.54 7.70 -2.39 -0.02 0.52 16 5 C -0.56 -30.50 8.47 25.60 0.22 -30.29 16 6 H 0.05 2.71 7.73 -2.91 -0.02 2.69 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -51.67 11.29 21.45 0.24 -51.43 16 9 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.67 -29.57 5.17 -499.46 -2.58 -32.15 16 14 C 0.05 1.89 5.99 85.56 0.51 2.40 16 15 C 0.53 18.03 7.88 87.66 0.69 18.72 16 16 O -0.56 -22.14 16.32 -3.03 -0.05 -22.19 16 17 N -0.72 -19.89 5.53 -466.81 -2.58 -22.47 16 18 C 0.11 2.43 5.35 85.63 0.46 2.89 16 19 C 0.52 11.89 7.92 87.66 0.69 12.58 16 20 O -0.58 -17.31 15.92 -3.03 -0.05 -17.36 16 21 N -0.62 -9.96 3.33 -811.77 -2.70 -12.66 16 22 C 0.08 0.75 6.48 86.73 0.56 1.32 16 23 C -0.12 -0.55 6.95 31.78 0.22 -0.33 16 24 C -0.13 -0.78 7.08 31.99 0.23 -0.55 16 25 C 0.10 1.26 6.91 86.86 0.60 1.86 16 26 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 2.24 7.64 -2.39 -0.02 2.22 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 3.59 5.95 -2.39 -0.01 3.57 16 31 H 0.26 14.24 8.31 -92.72 -0.77 13.47 16 32 H 0.33 15.15 8.29 -89.69 -0.74 14.40 16 33 H 0.10 3.58 7.92 -2.39 -0.02 3.56 16 34 H 0.06 2.24 8.11 -2.38 -0.02 2.22 16 35 H 0.41 11.18 7.44 -92.71 -0.69 10.49 16 36 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 Total: -1.00 -69.26 368.84 -0.54 -69.81 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.45 Total: 31.02 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.59 Total: 12.01 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -7.62 Total: -118.71 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.26 -0.54 -69.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563364617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.465 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds