Wall clock time and date at job start Tue Mar 31 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47425 * 2 1 4 4 H 1.09008 * 109.47242 * 178.57614 * 3 2 1 5 5 C 1.50696 * 109.47402 * 298.57560 * 3 2 1 6 6 H 1.08003 * 120.00245 * 119.99548 * 5 3 2 7 7 C 1.37873 * 119.99910 * 300.00297 * 5 3 2 8 8 N 1.31517 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99953 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47095 * 89.99649 * 9 7 5 11 11 H 1.48497 * 109.47358 * 209.99740 * 9 7 5 12 12 H 1.48500 * 109.47419 * 330.00009 * 9 7 5 13 13 N 1.46907 * 109.46934 * 58.57799 * 3 2 1 14 14 C 1.46897 * 110.99750 * 85.70341 * 13 3 2 15 15 C 1.50704 * 109.46634 * 177.11024 * 14 13 3 16 16 O 1.21276 * 120.00336 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99737 * 180.27624 * 15 14 13 18 18 C 1.46958 * 120.59582 * 359.44528 * 17 15 14 19 19 C 1.53814 * 108.40249 * 124.75835 * 18 17 15 20 20 N 1.46959 * 108.57638 * 49.63451 * 19 18 17 21 21 C 1.34780 * 120.59569 * 124.62432 * 20 19 18 22 22 C 1.50697 * 120.00381 * 185.21403 * 21 20 19 23 23 O 1.21282 * 119.99634 * 5.21573 * 21 20 19 24 24 C 1.46972 * 118.81567 * 304.65307 * 20 19 18 25 25 C 1.46959 * 120.59047 * 179.72418 * 17 15 14 26 26 H 1.08993 * 109.47455 * 175.94505 * 1 2 3 27 27 H 1.09004 * 109.46872 * 295.94589 * 1 2 3 28 28 H 1.09000 * 109.47081 * 55.94123 * 1 2 3 29 29 H 1.09008 * 109.47078 * 239.99918 * 2 1 3 30 30 H 1.09006 * 109.47355 * 120.00243 * 2 1 3 31 31 H 0.97002 * 120.00313 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99412 * 209.65893 * 13 3 2 33 33 H 1.09001 * 109.47127 * 57.11598 * 14 13 3 34 34 H 1.08991 * 109.47676 * 297.10609 * 14 13 3 35 35 H 1.09000 * 109.60955 * 244.54634 * 18 17 15 36 36 H 1.09007 * 109.60832 * 5.05172 * 18 17 15 37 37 H 1.09007 * 109.73765 * 289.85171 * 19 18 17 38 38 H 1.08994 * 109.67464 * 169.38460 * 19 18 17 39 39 H 1.09002 * 109.46942 * 84.80061 * 22 21 20 40 40 H 1.09003 * 109.47296 * 204.80081 * 22 21 20 41 41 H 1.08995 * 109.47092 * 324.79993 * 22 21 20 42 42 H 1.09004 * 109.60718 * 295.47860 * 24 20 19 43 43 H 1.09001 * 109.61091 * 174.97123 * 24 20 19 44 44 H 1.09004 * 109.61503 * 354.94795 * 25 17 15 45 45 H 1.09008 * 109.61202 * 115.28621 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4425 0.0255 5 6 1.5669 2.1426 -1.2477 6 1 0.9439 3.0215 -1.1705 7 6 1.9291 1.6612 -2.4878 8 7 2.6880 0.5913 -2.5820 9 14 1.3419 2.5288 -4.0345 10 1 2.3290 3.5675 -4.4244 11 1 1.2029 1.5404 -5.1340 12 1 0.0271 3.1683 -3.7746 13 7 1.5225 2.1448 1.1819 14 6 2.3882 1.9220 2.3476 15 6 1.8662 2.7130 3.5194 16 8 0.8708 3.3947 3.3957 17 7 2.5085 2.6668 4.7034 18 6 3.7119 1.8399 4.8698 19 6 4.8504 2.7373 5.3839 20 7 4.3562 3.5081 6.5334 21 6 4.9979 3.4612 7.7177 22 6 4.4158 4.1616 8.9184 23 8 6.0438 2.8552 7.8171 24 6 3.1495 4.3307 6.3687 25 6 2.0143 3.4376 5.8529 26 1 -0.3634 -1.0250 -0.0727 27 1 -0.3633 0.4496 0.9241 28 1 -0.3633 0.5755 -0.8514 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.9432 0.2528 -3.4545 32 1 1.4116 3.1305 0.9969 33 1 3.4026 2.2454 2.1140 34 1 2.3937 0.8615 2.5988 35 1 3.5139 1.0466 5.5905 36 1 3.9920 1.4044 3.9105 37 1 5.1664 3.4195 4.5946 38 1 5.6936 2.1196 5.6929 39 1 3.6880 3.5099 9.4018 40 1 5.2135 4.4004 9.6219 41 1 3.9250 5.0812 8.6000 42 1 3.3444 5.1263 5.6495 43 1 2.8675 4.7630 7.3287 44 1 1.1730 4.0576 5.5433 45 1 1.6953 2.7554 6.6410 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584299321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:28 Heat of formation + Delta-G solvation = -80.219261 kcal Electronic energy + Delta-G solvation = -24738.031432 eV Core-core repulsion = 21175.922125 eV Total energy + Delta-G solvation = -3562.109308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.57157 -40.46186 -38.25522 -37.66096 -35.24979 -34.47119 -32.90557 -32.46264 -30.87964 -29.21322 -28.28271 -26.57673 -25.07637 -24.60182 -23.55430 -21.33644 -20.76807 -19.59462 -18.76889 -18.12961 -17.39907 -17.21488 -17.02861 -16.72661 -16.65318 -16.48421 -15.67307 -15.35395 -15.01039 -14.87919 -14.78113 -14.45023 -14.35106 -13.89098 -13.77130 -13.51426 -13.23140 -13.07241 -12.96285 -12.82317 -12.69540 -12.64572 -12.43341 -12.38279 -12.35923 -11.97066 -11.71632 -11.33228 -10.95732 -10.83220 -10.74314 -10.51320 -10.35016 -9.42587 -9.01899 -8.10110 -6.21452 1.41491 1.43986 1.50845 1.53535 1.63983 1.68202 2.12982 2.43567 3.18777 3.40918 3.61693 3.74935 3.78635 3.84329 4.09904 4.18462 4.28162 4.34792 4.41673 4.45869 4.49989 4.61721 4.64618 4.68258 4.71986 4.77178 4.79667 4.93808 4.95725 5.11044 5.29090 5.33348 5.36906 5.47018 5.55505 5.71398 5.81756 5.87664 6.19227 6.29493 6.35487 6.46118 6.75535 6.97586 7.08861 7.16422 7.47084 8.94718 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027938 B = 0.002990 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.975535 B = 9361.783317 C = 9497.789132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.224 3.776 4 H -0.023 1.023 5 C -0.527 4.527 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.673 5.673 14 C 0.045 3.955 15 C 0.522 3.478 16 O -0.561 6.561 17 N -0.614 5.614 18 C 0.097 3.903 19 C 0.096 3.904 20 N -0.614 5.614 21 C 0.507 3.493 22 C -0.170 4.170 23 O -0.597 6.597 24 C 0.097 3.903 25 C 0.094 3.906 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.334 0.666 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 5.825 21.904 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C 0.116 3.884 4 H -0.006 1.006 5 C -0.565 4.565 6 H 0.070 0.930 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.305 5.305 14 C -0.088 4.088 15 C 0.311 3.689 16 O -0.439 6.439 17 N -0.349 5.349 18 C -0.026 4.026 19 C -0.028 4.028 20 N -0.347 5.347 21 C 0.299 3.701 22 C -0.228 4.228 23 O -0.479 6.479 24 C -0.026 4.026 25 C -0.029 4.029 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.156 0.844 44 H 0.114 0.886 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.963 5.262 21.925 22.633 hybrid contribution 0.713 0.680 -1.514 1.807 sum 2.677 5.942 20.411 21.426 Atomic orbital electron populations 1.21315 0.96427 0.98313 1.00596 1.21344 0.95908 0.97562 0.99017 1.18973 0.91076 0.92015 0.86302 1.00592 1.21426 1.31511 1.12005 0.91557 0.93007 1.25547 0.95154 0.95595 1.01560 1.69985 1.37032 1.23458 1.24757 0.85655 0.78754 0.78341 0.79480 1.20252 1.20880 1.19700 1.60412 1.49450 1.16168 1.04508 1.21888 0.95645 1.00856 0.90374 1.20814 0.82905 0.81070 0.84128 1.90655 1.26729 1.42838 1.83702 1.48114 1.28558 1.47638 1.10599 1.22319 0.83544 0.93073 1.03681 1.22015 0.96921 0.95420 0.88402 1.48248 1.28635 1.47049 1.10818 1.21666 0.83494 0.79860 0.85123 1.22016 1.03922 1.02583 0.94303 1.90702 1.25171 1.46665 1.85328 1.22383 0.82914 0.92590 1.04676 1.22113 0.97449 0.95631 0.87726 0.94677 0.93494 0.94784 0.91963 0.95486 0.92896 0.84858 0.92305 0.88017 0.89546 0.87759 0.90988 0.88443 0.86778 0.88924 0.87134 0.90865 0.84401 0.88647 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 9.52 71.98 0.69 -4.18 16 2 C -0.10 -4.72 5.59 30.59 0.17 -4.55 16 3 C 0.22 11.01 2.30 44.17 0.10 11.11 16 4 H -0.02 -1.24 7.74 -2.38 -0.02 -1.26 16 5 C -0.53 -28.44 7.33 25.60 0.19 -28.25 16 6 H 0.05 2.83 7.61 -2.91 -0.02 2.81 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -51.24 11.31 21.45 0.24 -50.99 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.67 -28.71 5.23 -499.46 -2.61 -31.33 16 14 C 0.04 1.48 4.34 85.56 0.37 1.85 16 15 C 0.52 15.99 7.73 87.66 0.68 16.67 16 16 O -0.56 -21.35 15.54 -3.02 -0.05 -21.40 16 17 N -0.61 -13.34 2.94 -817.15 -2.40 -15.75 16 18 C 0.10 1.71 6.54 86.57 0.57 2.27 16 19 C 0.10 1.71 6.60 86.57 0.57 2.28 16 20 N -0.61 -9.64 2.95 -817.14 -2.41 -12.05 16 21 C 0.51 8.88 7.80 87.66 0.68 9.56 16 22 C -0.17 -1.26 9.45 71.23 0.67 -0.59 16 23 O -0.60 -16.33 16.53 -3.04 -0.05 -16.38 16 24 C 0.10 1.08 6.45 86.41 0.56 1.64 16 25 C 0.09 1.49 6.59 86.42 0.57 2.06 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 2.03 7.70 -2.38 -0.02 2.01 16 28 H 0.03 1.64 7.13 -2.39 -0.02 1.62 16 29 H 0.06 3.31 6.03 -2.38 -0.01 3.30 16 30 H 0.03 1.14 7.59 -2.38 -0.02 1.13 16 31 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.33 14.95 7.80 -89.69 -0.70 14.25 16 33 H 0.06 1.85 7.57 -2.39 -0.02 1.83 16 34 H 0.10 3.16 7.34 -2.39 -0.02 3.14 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.82 5.91 -2.38 -0.01 1.80 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.10 1.91 7.02 -2.39 -0.02 1.90 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.23 6.22 -2.39 -0.01 0.22 16 42 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.14 0.49 5.45 -2.39 -0.01 0.48 16 44 H 0.10 1.81 6.99 -2.39 -0.02 1.79 16 45 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -72.01 354.29 1.31 -70.71 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.30 Total: 20.31 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.26 Total: 11.46 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -7.18 Total: -110.11 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.10 Total: -37.77 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -72.01 1.31 -70.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584299321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.511 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds