Wall clock time and date at job start Tue Mar 31 2020 03:13:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86806 * 120.00022 * 2 1
4 4 H 1.48501 * 109.46840 * 269.99612 * 3 2 1
5 5 H 1.48499 * 109.47117 * 29.99678 * 3 2 1
6 6 H 1.48497 * 109.47125 * 150.00013 * 3 2 1
7 7 C 1.37878 * 119.99941 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99720 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00108 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47152 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46923 * 179.97438 * 10 9 7
12 12 C 1.53006 * 109.46837 * 180.02562 * 11 10 9
13 13 C 1.50708 * 109.47014 * 180.02562 * 12 11 10
14 14 O 1.21286 * 119.99797 * 0.02562 * 13 12 11
15 15 N 1.34771 * 119.99991 * 180.02562 * 13 12 11
16 16 C 1.46499 * 120.00010 * 180.02562 * 15 13 12
17 17 C 1.52996 * 109.47275 * 179.97438 * 16 15 13
18 18 N 1.46900 * 109.47537 * 179.97438 * 17 16 15
19 19 C 1.47185 * 110.99887 * 56.83807 * 18 17 16
20 20 C 1.52992 * 108.71825 * 167.62440 * 19 18 17
21 21 N 1.46018 * 110.03907 * 50.30733 * 20 19 18
22 22 C 1.33714 * 122.92358 * 341.83961 * 21 20 19
23 23 O 1.21278 * 118.61847 * 181.68683 * 22 21 20
24 24 C 1.46909 * 110.99602 * 293.95078 * 18 17 16
25 25 H 0.97001 * 120.00065 * 0.02562 * 1 2 3
26 26 H 1.09000 * 109.46748 * 59.99918 * 9 7 2
27 27 H 1.09003 * 109.47100 * 299.99978 * 9 7 2
28 28 H 1.09000 * 109.46955 * 60.00543 * 10 9 7
29 29 H 1.08996 * 109.47734 * 299.99943 * 10 9 7
30 30 H 1.09000 * 109.47122 * 60.00428 * 11 10 9
31 31 H 1.09000 * 109.47571 * 300.00044 * 11 10 9
32 32 H 1.09000 * 109.47027 * 60.00833 * 12 11 10
33 33 H 1.08992 * 109.47274 * 300.00045 * 12 11 10
34 34 H 0.97002 * 120.00061 * 359.97438 * 15 13 12
35 35 H 1.09000 * 109.47605 * 59.99453 * 16 15 13
36 36 H 1.09003 * 109.46765 * 299.99693 * 16 15 13
37 37 H 1.09000 * 109.47233 * 59.99246 * 17 16 15
38 38 H 1.09003 * 109.46991 * 299.99576 * 17 16 15
39 39 H 1.08996 * 109.59827 * 287.41046 * 19 18 17
40 40 H 1.09007 * 109.59444 * 47.86678 * 19 18 17
41 41 H 1.09003 * 109.37746 * 290.13187 * 20 19 18
42 42 H 1.09003 * 109.37887 * 170.47797 * 20 19 18
43 43 H 0.96997 * 118.53285 * 162.12828 * 21 20 19
44 44 H 1.09000 * 109.38197 * 53.50775 * 24 18 17
45 45 H 1.08999 * 109.38491 * 293.82036 * 24 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 6 2.4745 -6.1500 0.0018
13 6 1.7210 -7.4552 0.0018
14 8 0.5081 -7.4551 0.0009
15 7 2.3948 -8.6223 0.0029
16 6 1.6623 -9.8910 0.0023
17 6 2.6565 -11.0540 0.0031
18 7 1.9221 -12.3262 0.0031
19 6 1.0079 -12.4075 -1.1476
20 6 0.5077 -13.8476 -1.2764
21 7 0.0066 -14.3202 0.0111
22 6 0.3141 -13.7310 1.1714
23 8 -0.1208 -14.2077 2.1982
24 6 1.1762 -12.5033 1.2563
25 1 -0.4850 0.8400 -0.0004
26 1 0.6247 -2.5570 -0.8897
27 1 0.6240 -2.5567 0.8903
28 1 2.8718 -3.6043 0.8906
29 1 2.8719 -3.6044 -0.8894
30 1 0.8533 -5.0451 -0.8886
31 1 0.8538 -5.0446 0.8914
32 1 3.1010 -6.0919 0.8919
33 1 3.1012 -6.0927 -0.8881
34 1 3.3648 -8.6223 0.0032
35 1 1.0366 -9.9490 -0.8883
36 1 1.0347 -9.9485 0.8916
37 1 3.2826 -10.9962 0.8935
38 1 3.2838 -10.9962 -0.8865
39 1 0.1616 -11.7390 -0.9901
40 1 1.5379 -12.1221 -2.0564
41 1 1.3277 -14.4875 -1.6023
42 1 -0.2946 -13.8872 -2.0132
43 1 -0.5718 -15.0988 0.0257
44 1 0.5467 -11.6304 1.4291
45 1 1.8782 -12.6106 2.0831
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000588675300.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:12
Heat of formation + Delta-G solvation = -87.234188 kcal
Electronic energy + Delta-G solvation = -23083.201228 eV
Core-core repulsion = 19520.787730 eV
Total energy + Delta-G solvation = -3562.413498 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.93202 -39.76266 -38.15738 -35.84914 -34.92689 -34.32383 -32.63410 -30.39660
-30.34743 -29.22359 -26.58431 -25.28566 -24.33035 -22.51899 -22.08605 -20.34593
-19.98936 -19.63568 -17.84193 -17.42595 -16.85240 -16.72717 -16.18813 -15.99181
-15.87679 -15.33407 -15.05569 -14.85982 -14.48805 -14.24260 -13.94291 -13.67494
-13.44911 -13.10509 -12.75419 -12.59565 -12.34809 -12.17258 -12.04928 -11.71178
-11.60712 -11.60670 -10.99206 -10.55798 -10.51509 -10.42644 -10.40171 -9.94168
-9.63173 -9.62039 -9.30456 -9.26570 -9.12713 -8.97956 -8.31089 -5.95762
-3.98359 2.13482 2.64334 2.72433 2.84140 3.26010 3.33459 3.39565
3.42710 3.97898 4.11368 4.28865 4.33421 4.48311 4.52213 4.64227
4.78297 4.84697 4.94578 4.97449 5.03581 5.21624 5.27879 5.28823
5.35641 5.39651 5.48686 5.82031 6.01505 6.02807 6.11616 6.21207
6.28336 6.33127 6.52619 6.75981 6.82138 7.00056 7.18528 7.31503
7.70772 7.73394 7.89162 8.05457 8.17235 8.47207 9.09354 9.65279
11.15527
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.042861 B = 0.001823 C = 0.001806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.113030 B =15355.960285 C =15498.717571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.520 4.520
8 H 0.054 0.946
9 C 0.019 3.981
10 C -0.110 4.110
11 C -0.104 4.104
12 C -0.138 4.138
13 C 0.512 3.488
14 O -0.535 6.535
15 N -0.736 5.736
16 C 0.078 3.922
17 C 0.041 3.959
18 N -0.521 5.521
19 C 0.023 3.977
20 C 0.116 3.884
21 N -0.720 5.720
22 C 0.526 3.474
23 O -0.551 6.551
24 C 0.028 3.972
25 H 0.260 0.740
26 H 0.015 0.985
27 H 0.016 0.984
28 H 0.047 0.953
29 H 0.047 0.953
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.402 0.598
35 H 0.068 0.932
36 H 0.066 0.934
37 H 0.090 0.910
38 H 0.092 0.908
39 H 0.055 0.945
40 H 0.101 0.899
41 H 0.076 0.924
42 H 0.083 0.917
43 H 0.402 0.598
44 H 0.081 0.919
45 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.720 -30.152 -3.926 31.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.146 4.146
3 Si 0.720 3.280
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.199 1.199
7 C -0.559 4.559
8 H 0.073 0.927
9 C -0.018 4.018
10 C -0.148 4.148
11 C -0.142 4.142
12 C -0.178 4.178
13 C 0.299 3.701
14 O -0.410 6.410
15 N -0.391 5.391
16 C -0.047 4.047
17 C -0.087 4.087
18 N -0.245 5.245
19 C -0.105 4.105
20 C -0.009 4.009
21 N -0.373 5.373
22 C 0.313 3.687
23 O -0.428 6.428
24 C -0.102 4.102
25 H 0.070 0.930
26 H 0.034 0.966
27 H 0.034 0.966
28 H 0.065 0.935
29 H 0.065 0.935
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.110 0.890
33 H 0.109 0.891
34 H 0.236 0.764
35 H 0.087 0.913
36 H 0.084 0.916
37 H 0.108 0.892
38 H 0.111 0.889
39 H 0.073 0.927
40 H 0.120 0.880
41 H 0.094 0.906
42 H 0.102 0.898
43 H 0.237 0.763
44 H 0.099 0.901
45 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 5.930 -30.490 -3.423 31.249
hybrid contribution 0.109 1.317 -0.082 1.324
sum 6.039 -29.173 -3.504 29.997
Atomic orbital electron populations
1.69975 1.06048 1.26512 1.50910 1.25051 0.94853 0.99254 0.95471
0.86604 0.79816 0.83581 0.78037 1.20715 1.21254 1.19927 1.21281
0.92979 0.91190 1.50418 0.92745 1.19099 0.94071 0.91294 0.97314
1.21649 0.99079 0.93978 1.00085 1.21458 0.97026 0.92749 1.02943
1.21797 1.00095 0.91841 1.04060 1.21172 0.88466 0.85610 0.74841
1.90716 1.14324 1.87656 1.48305 1.45953 1.10249 1.05322 1.77537
1.22044 0.96138 0.83976 1.02575 1.22502 0.96083 0.85445 1.04673
1.62847 1.26994 1.32793 1.01889 1.22644 0.96213 0.96242 0.95367
1.21513 0.99497 0.95063 0.84842 1.45549 1.51790 1.33336 1.06604
1.20058 0.80357 0.85170 0.83138 1.90799 1.54297 1.64165 1.33587
1.22436 0.97251 0.96017 0.94514 0.93043 0.96612 0.96583 0.93453
0.93456 0.91835 0.91828 0.89043 0.89059 0.76420 0.91346 0.91586
0.89195 0.88939 0.92689 0.88035 0.90578 0.89836 0.76255 0.90078
0.86415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16
2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16
4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16
8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16
9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16
10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16
11 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16
12 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16
13 C 0.51 6.61 7.83 -10.98 -0.09 6.53 16
14 O -0.53 -9.41 15.98 5.55 0.09 -9.32 16
15 N -0.74 -6.12 5.56 -60.29 -0.33 -6.45 16
16 C 0.08 0.58 4.97 -4.04 -0.02 0.56 16
17 C 0.04 0.18 5.46 -3.83 -0.02 0.16 16
18 N -0.52 -2.75 4.95 -236.10 -1.17 -3.92 16
19 C 0.02 0.10 4.67 -3.67 -0.02 0.08 16
20 C 0.12 0.40 7.39 -4.31 -0.03 0.37 16
21 N -0.72 -4.41 5.52 -61.05 -0.34 -4.74 16
22 C 0.53 4.79 7.81 -11.68 -0.09 4.70 16
23 O -0.55 -7.36 17.82 5.56 0.10 -7.26 16
24 C 0.03 0.20 5.43 -5.19 -0.03 0.17 16
25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16
30 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16
31 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16
32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16
34 H 0.40 2.05 8.47 -40.82 -0.35 1.70 16
35 H 0.07 0.57 6.65 -51.93 -0.35 0.22 16
36 H 0.07 0.60 6.42 -51.93 -0.33 0.26 16
37 H 0.09 0.35 8.12 -51.93 -0.42 -0.08 16
38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16
39 H 0.05 0.29 6.96 -51.93 -0.36 -0.07 16
40 H 0.10 0.28 8.06 -51.93 -0.42 -0.14 16
41 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16
42 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16
43 H 0.40 2.08 8.84 -40.82 -0.36 1.72 16
44 H 0.08 0.59 6.19 -51.93 -0.32 0.27 16
45 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16
LS Contribution 365.83 15.07 5.51 5.51
Total: -1.00 -37.46 365.83 -9.20 -46.66
By element:
Atomic # 1 Polarization: 4.01 SS G_CDS: -7.52 Total: -3.51 kcal
Atomic # 6 Polarization: -5.78 SS G_CDS: -1.26 Total: -7.04 kcal
Atomic # 7 Polarization: -40.78 SS G_CDS: -1.10 Total: -41.88 kcal
Atomic # 8 Polarization: -16.76 SS G_CDS: 0.19 Total: -16.58 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -37.46 -9.20 -46.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588675300.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.573 kcal
(2) G-P(sol) polarization free energy of solvation -37.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.030 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.661 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds