Wall clock time and date at job start Tue Mar 31 2020 03:13:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86806 * 120.00022 * 2 1
4 4 H 1.48501 * 109.46840 * 269.99612 * 3 2 1
5 5 H 1.48499 * 109.47117 * 29.99678 * 3 2 1
6 6 H 1.48497 * 109.47125 * 150.00013 * 3 2 1
7 7 C 1.37878 * 119.99941 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99720 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00108 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47152 * 179.97438 * 9 7 2
11 11 C 1.52999 * 109.46923 * 179.97438 * 10 9 7
12 12 C 1.53006 * 109.46837 * 180.02562 * 11 10 9
13 13 C 1.50708 * 109.47014 * 180.02562 * 12 11 10
14 14 O 1.21286 * 119.99797 * 0.02562 * 13 12 11
15 15 N 1.34771 * 119.99991 * 180.02562 * 13 12 11
16 16 C 1.46499 * 120.00010 * 180.02562 * 15 13 12
17 17 C 1.52996 * 109.47275 * 179.97438 * 16 15 13
18 18 N 1.46900 * 109.47537 * 179.97438 * 17 16 15
19 19 C 1.47185 * 110.99887 * 56.83807 * 18 17 16
20 20 C 1.52992 * 108.71825 * 167.62440 * 19 18 17
21 21 N 1.46018 * 110.03907 * 50.30733 * 20 19 18
22 22 C 1.33714 * 122.92358 * 341.83961 * 21 20 19
23 23 O 1.21278 * 118.61847 * 181.68683 * 22 21 20
24 24 C 1.46909 * 110.99602 * 293.95078 * 18 17 16
25 25 H 0.97001 * 120.00065 * 0.02562 * 1 2 3
26 26 H 1.09000 * 109.46748 * 59.99918 * 9 7 2
27 27 H 1.09003 * 109.47100 * 299.99978 * 9 7 2
28 28 H 1.09000 * 109.46955 * 60.00543 * 10 9 7
29 29 H 1.08996 * 109.47734 * 299.99943 * 10 9 7
30 30 H 1.09000 * 109.47122 * 60.00428 * 11 10 9
31 31 H 1.09000 * 109.47571 * 300.00044 * 11 10 9
32 32 H 1.09000 * 109.47027 * 60.00833 * 12 11 10
33 33 H 1.08992 * 109.47274 * 300.00045 * 12 11 10
34 34 H 0.97002 * 120.00061 * 359.97438 * 15 13 12
35 35 H 1.09000 * 109.47605 * 59.99453 * 16 15 13
36 36 H 1.09003 * 109.46765 * 299.99693 * 16 15 13
37 37 H 1.09000 * 109.47233 * 59.99246 * 17 16 15
38 38 H 1.09003 * 109.46991 * 299.99576 * 17 16 15
39 39 H 1.08996 * 109.59827 * 287.41046 * 19 18 17
40 40 H 1.09007 * 109.59444 * 47.86678 * 19 18 17
41 41 H 1.09003 * 109.37746 * 290.13187 * 20 19 18
42 42 H 1.09003 * 109.37887 * 170.47797 * 20 19 18
43 43 H 0.96997 * 118.53285 * 162.12828 * 21 20 19
44 44 H 1.09000 * 109.38197 * 53.50775 * 24 18 17
45 45 H 1.08999 * 109.38491 * 293.82036 * 24 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 6 2.4745 -6.1500 0.0018
13 6 1.7210 -7.4552 0.0018
14 8 0.5081 -7.4551 0.0009
15 7 2.3948 -8.6223 0.0029
16 6 1.6623 -9.8910 0.0023
17 6 2.6565 -11.0540 0.0031
18 7 1.9221 -12.3262 0.0031
19 6 1.0079 -12.4075 -1.1476
20 6 0.5077 -13.8476 -1.2764
21 7 0.0066 -14.3202 0.0111
22 6 0.3141 -13.7310 1.1714
23 8 -0.1208 -14.2077 2.1982
24 6 1.1762 -12.5033 1.2563
25 1 -0.4850 0.8400 -0.0004
26 1 0.6247 -2.5570 -0.8897
27 1 0.6240 -2.5567 0.8903
28 1 2.8718 -3.6043 0.8906
29 1 2.8719 -3.6044 -0.8894
30 1 0.8533 -5.0451 -0.8886
31 1 0.8538 -5.0446 0.8914
32 1 3.1010 -6.0919 0.8919
33 1 3.1012 -6.0927 -0.8881
34 1 3.3648 -8.6223 0.0032
35 1 1.0366 -9.9490 -0.8883
36 1 1.0347 -9.9485 0.8916
37 1 3.2826 -10.9962 0.8935
38 1 3.2838 -10.9962 -0.8865
39 1 0.1616 -11.7390 -0.9901
40 1 1.5379 -12.1221 -2.0564
41 1 1.3277 -14.4875 -1.6023
42 1 -0.2946 -13.8872 -2.0132
43 1 -0.5718 -15.0988 0.0257
44 1 0.5467 -11.6304 1.4291
45 1 1.8782 -12.6106 2.0831
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000588675300.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:12
Heat of formation + Delta-G solvation = -118.306544 kcal
Electronic energy + Delta-G solvation = -23084.548626 eV
Core-core repulsion = 19520.787730 eV
Total energy + Delta-G solvation = -3563.760896 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.51944 -40.73610 -38.80991 -36.75079 -36.35326 -35.07621 -34.59651 -31.73323
-30.85361 -30.20700 -27.73774 -26.50409 -24.86255 -24.01331 -22.76020 -21.81051
-21.23784 -20.13492 -18.46028 -18.41863 -17.96581 -17.77287 -17.35391 -16.97907
-16.61783 -16.46143 -15.95403 -15.85055 -15.49312 -15.10795 -14.95924 -14.53490
-14.50914 -14.15307 -13.75610 -13.57815 -13.52982 -13.31046 -13.16520 -12.82110
-12.70391 -12.47387 -12.33688 -12.15338 -12.13637 -12.07659 -11.37060 -11.35703
-11.17763 -11.11858 -10.82405 -10.54928 -10.18443 -10.08797 -9.60981 -8.18560
-6.30782 1.40626 1.42952 1.45075 1.54031 1.65085 2.12184 2.24953
2.42150 2.72524 3.14103 3.48680 3.74665 3.86422 3.89233 3.91468
4.03291 4.08448 4.16810 4.24183 4.42702 4.47879 4.50360 4.67170
4.70468 4.74788 4.79853 4.86842 4.88451 4.95160 5.03329 5.20234
5.33728 5.34207 5.42627 5.57655 5.57960 5.68616 5.78596 5.86534
5.88475 6.19688 6.25434 6.56124 6.87946 7.08548 7.28874 7.38881
8.93626
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.042861 B = 0.001823 C = 0.001806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.113030 B =15355.960285 C =15498.717571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.938 5.938
2 C -0.009 4.009
3 Si 0.970 3.030
4 H -0.271 1.271
5 H -0.285 1.285
6 H -0.259 1.259
7 C -0.541 4.541
8 H 0.067 0.933
9 C 0.017 3.983
10 C -0.096 4.096
11 C -0.097 4.097
12 C -0.127 4.127
13 C 0.509 3.491
14 O -0.592 6.592
15 N -0.712 5.712
16 C 0.079 3.921
17 C 0.052 3.948
18 N -0.517 5.517
19 C 0.019 3.981
20 C 0.113 3.887
21 N -0.712 5.712
22 C 0.519 3.481
23 O -0.605 6.605
24 C 0.032 3.968
25 H 0.262 0.738
26 H -0.016 1.016
27 H -0.017 1.017
28 H 0.061 0.939
29 H 0.063 0.937
30 H 0.042 0.958
31 H 0.039 0.961
32 H 0.119 0.881
33 H 0.122 0.878
34 H 0.422 0.578
35 H 0.060 0.940
36 H 0.046 0.954
37 H 0.101 0.899
38 H 0.116 0.884
39 H 0.041 0.959
40 H 0.124 0.876
41 H 0.091 0.909
42 H 0.106 0.894
43 H 0.405 0.595
44 H 0.074 0.926
45 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.066 -30.674 -5.129 32.689
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.206 4.206
3 Si 0.794 3.206
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.183 1.183
7 C -0.579 4.579
8 H 0.085 0.915
9 C -0.020 4.020
10 C -0.133 4.133
11 C -0.135 4.135
12 C -0.167 4.167
13 C 0.297 3.703
14 O -0.473 6.473
15 N -0.366 5.366
16 C -0.046 4.046
17 C -0.076 4.076
18 N -0.241 5.241
19 C -0.109 4.109
20 C -0.011 4.011
21 N -0.363 5.363
22 C 0.306 3.694
23 O -0.487 6.487
24 C -0.098 4.098
25 H 0.071 0.929
26 H 0.003 0.997
27 H 0.001 0.999
28 H 0.079 0.921
29 H 0.081 0.919
30 H 0.060 0.940
31 H 0.058 0.942
32 H 0.137 0.863
33 H 0.140 0.860
34 H 0.260 0.740
35 H 0.078 0.922
36 H 0.064 0.936
37 H 0.120 0.880
38 H 0.134 0.866
39 H 0.059 0.941
40 H 0.142 0.858
41 H 0.109 0.891
42 H 0.124 0.876
43 H 0.242 0.758
44 H 0.092 0.908
45 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 9.350 -31.056 -4.676 32.769
hybrid contribution -0.977 1.429 0.231 1.747
sum 8.373 -29.627 -4.445 31.107
Atomic orbital electron populations
1.70135 1.08086 1.27729 1.51919 1.26117 0.95803 1.03811 0.94838
0.85369 0.78659 0.78003 0.78529 1.19668 1.21043 1.18273 1.21763
0.93783 0.92187 1.50152 0.91470 1.19072 0.94748 0.93925 0.94248
1.21448 0.97782 0.92679 1.01408 1.21252 0.97582 0.93861 1.00853
1.21671 0.98838 0.89294 1.06895 1.21246 0.87718 0.86940 0.74354
1.90707 1.16760 1.88456 1.51335 1.45709 1.11276 1.04401 1.75251
1.22116 0.96789 0.84447 1.01294 1.22537 0.95202 0.83454 1.06427
1.62915 1.26863 1.32994 1.01340 1.22779 0.95924 0.96423 0.95759
1.21771 1.00795 0.94793 0.83717 1.45629 1.50840 1.32898 1.06925
1.20447 0.80220 0.85610 0.83144 1.90765 1.56542 1.65848 1.35518
1.22345 0.97078 0.94694 0.95699 0.92887 0.99745 0.99856 0.92059
0.91866 0.93951 0.94192 0.86257 0.85988 0.74001 0.92171 0.93581
0.88024 0.86554 0.94099 0.85771 0.89091 0.87556 0.75834 0.90833
0.86098
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -59.11 13.29 21.45 0.28 -58.83 16
2 C -0.01 -0.51 5.46 84.66 0.46 -0.04 16
3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16
4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16
5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16
6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16
7 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16
8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16
9 C 0.02 0.94 4.97 29.85 0.15 1.09 16
10 C -0.10 -3.83 5.15 30.59 0.16 -3.68 16
11 C -0.10 -3.43 4.50 30.60 0.14 -3.29 16
12 C -0.13 -2.87 5.70 29.85 0.17 -2.69 16
13 C 0.51 12.52 7.83 87.66 0.69 13.21 16
14 O -0.59 -21.32 15.98 -3.05 -0.05 -21.37 16
15 N -0.71 -10.07 5.56 -463.06 -2.57 -12.64 16
16 C 0.08 1.05 4.97 86.38 0.43 1.48 16
17 C 0.05 0.31 5.46 86.30 0.47 0.78 16
18 N -0.52 -4.40 4.95 -900.88 -4.46 -8.86 16
19 C 0.02 0.12 4.67 86.25 0.40 0.52 16
20 C 0.11 0.53 7.39 86.47 0.64 1.17 16
21 N -0.71 -8.20 5.52 -466.06 -2.57 -10.77 16
22 C 0.52 9.58 7.81 87.68 0.69 10.27 16
23 O -0.61 -16.97 17.82 -3.02 -0.05 -17.02 16
24 C 0.03 0.44 5.43 85.41 0.46 0.90 16
25 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16
27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16
28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
30 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16
31 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16
32 H 0.12 2.07 8.14 -2.39 -0.02 2.06 16
33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16
34 H 0.42 2.59 8.47 -92.71 -0.79 1.81 16
35 H 0.06 0.94 6.65 -2.39 -0.02 0.92 16
36 H 0.05 0.83 6.42 -2.39 -0.02 0.81 16
37 H 0.10 0.43 8.12 -2.39 -0.02 0.41 16
38 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16
39 H 0.04 0.40 6.96 -2.39 -0.02 0.38 16
40 H 0.12 0.26 8.06 -2.38 -0.02 0.24 16
41 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16
42 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16
43 H 0.41 4.02 8.84 -92.71 -0.82 3.20 16
44 H 0.07 1.11 6.19 -2.39 -0.01 1.10 16
45 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16
Total: -1.00 -86.15 365.83 -2.92 -89.06
By element:
Atomic # 1 Polarization: 5.66 SS G_CDS: -0.61 Total: 5.05 kcal
Atomic # 6 Polarization: -16.39 SS G_CDS: 5.09 Total: -11.31 kcal
Atomic # 7 Polarization: -81.78 SS G_CDS: -9.31 Total: -91.09 kcal
Atomic # 8 Polarization: -38.29 SS G_CDS: -0.10 Total: -38.39 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal
Total: -86.15 -2.92 -89.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588675300.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.245 kcal
(2) G-P(sol) polarization free energy of solvation -86.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.915 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds