Wall clock time and date at job start Tue Mar 31 2020 04:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47137 * 2 1 4 4 N 1.46498 * 109.47072 * 240.00057 * 2 1 3 5 5 C 1.34783 * 120.00177 * 205.00086 * 4 2 1 6 6 O 1.21287 * 119.99540 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00420 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47579 * 179.97438 * 7 5 4 9 9 C 1.34769 * 120.00316 * 179.97438 * 8 7 5 10 10 O 1.21587 * 120.00191 * 355.01355 * 9 8 7 11 11 N 1.34783 * 120.00014 * 175.01889 * 9 8 7 12 12 C 1.46923 * 120.62933 * 5.22766 * 11 9 8 13 13 C 1.53194 * 108.77471 * 126.36897 * 12 11 9 14 14 C 1.53041 * 109.31301 * 54.63439 * 13 12 11 15 15 C 1.53037 * 109.53516 * 298.63293 * 14 13 12 16 16 H 1.09000 * 109.50337 * 301.41300 * 15 14 13 17 17 C 1.50706 * 109.49501 * 181.34944 * 15 14 13 18 18 H 1.07996 * 120.00307 * 0.02562 * 17 15 14 19 19 C 1.37877 * 119.99642 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00604 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99581 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46899 * 60.00454 * 21 19 17 23 23 H 1.48503 * 109.46669 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47384 * 300.00082 * 21 19 17 25 25 C 1.46924 * 120.62794 * 184.94338 * 11 9 8 26 26 H 1.08999 * 109.47521 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47263 * 59.99889 * 1 2 3 28 28 H 1.08995 * 109.47388 * 299.99903 * 1 2 3 29 29 H 1.09002 * 109.47263 * 120.00111 * 2 1 3 30 30 H 1.08997 * 109.46808 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47321 * 299.99637 * 3 2 1 32 32 H 1.09000 * 109.46818 * 60.00280 * 3 2 1 33 33 H 0.97000 * 120.00368 * 25.00309 * 4 2 1 34 34 H 1.09005 * 109.46913 * 300.00023 * 7 5 4 35 35 H 1.09000 * 109.47055 * 59.99608 * 7 5 4 36 36 H 0.97001 * 119.99392 * 0.02562 * 8 7 5 37 37 H 1.08995 * 109.58298 * 246.15660 * 12 11 9 38 38 H 1.08996 * 109.58792 * 6.57957 * 12 11 9 39 39 H 1.09000 * 109.49209 * 174.58485 * 13 12 11 40 40 H 1.09001 * 109.49635 * 294.68127 * 13 12 11 41 41 H 1.09003 * 109.45833 * 58.65285 * 14 13 12 42 42 H 1.08996 * 109.45848 * 178.61185 * 14 13 12 43 43 H 0.96997 * 120.00219 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.59020 * 353.42282 * 25 11 9 45 45 H 1.09001 * 109.58256 * 113.84526 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 3.2402 -1.2592 -1.1944 6 8 3.9358 -1.1987 -0.2026 7 6 3.7428 -1.9691 -2.4250 8 7 5.0860 -2.4958 -2.1707 9 6 5.7381 -3.1733 -3.1361 10 8 5.1784 -3.4262 -4.1854 11 7 7.0108 -3.5706 -2.9384 12 6 7.6626 -3.3741 -1.6364 13 6 8.2180 -4.7183 -1.1552 14 6 9.1324 -5.3035 -2.2340 15 6 8.3266 -5.5437 -3.5127 16 1 7.5011 -6.2232 -3.3004 17 6 9.2201 -6.1507 -4.5636 18 1 10.2588 -6.3462 -4.3420 19 6 8.7110 -6.4574 -5.8077 20 7 7.4459 -6.2198 -6.0776 21 14 9.8187 -7.2091 -7.1107 22 1 10.3590 -8.5007 -6.6157 23 1 9.0361 -7.4421 -8.3511 24 1 10.9414 -6.2816 -7.4011 25 6 7.7705 -4.2140 -4.0189 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.4622 -0.7386 -1.9895 34 1 3.0703 -2.7911 -2.6704 35 1 3.7796 -1.2684 -3.2591 36 1 5.5056 -2.3575 -1.3072 37 1 8.4777 -2.6580 -1.7403 38 1 6.9349 -3.0005 -0.9161 39 1 8.7871 -4.5692 -0.2376 40 1 7.3936 -5.4055 -0.9651 41 1 9.9428 -4.6046 -2.4413 42 1 9.5484 -6.2482 -1.8840 43 1 7.0880 -6.4353 -6.9529 44 1 7.1140 -4.3944 -4.8701 45 1 8.5947 -3.5678 -4.3210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595426146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:34 Heat of formation + Delta-G solvation = -97.069955 kcal Electronic energy + Delta-G solvation = -24559.578674 eV Core-core repulsion = 20996.738665 eV Total energy + Delta-G solvation = -3562.840009 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55158 -40.70126 -38.51075 -37.11557 -35.64750 -35.03261 -33.45475 -32.66367 -31.52013 -28.78025 -28.08514 -26.94418 -25.72912 -23.46463 -22.63518 -21.67595 -21.57494 -20.56181 -19.31609 -18.32078 -17.76850 -17.44586 -17.06546 -16.75039 -16.51945 -16.05271 -15.42775 -15.26309 -15.20545 -15.01955 -14.68622 -14.37786 -14.22656 -14.08371 -13.85250 -13.58116 -13.39238 -13.19664 -13.03828 -12.83137 -12.68260 -12.29801 -12.26861 -12.22805 -11.91200 -11.87489 -11.62634 -11.25390 -11.09684 -10.93977 -10.83461 -10.48964 -10.32042 -10.14890 -9.28614 -8.06962 -6.24643 1.42879 1.43958 1.44475 1.52918 1.55566 2.18565 2.23649 2.44594 3.03417 3.21527 3.61465 3.97163 4.02530 4.13747 4.14468 4.26602 4.33288 4.34767 4.37898 4.60152 4.73440 4.74559 4.76647 4.80830 4.85710 4.94367 5.01492 5.10500 5.24660 5.26708 5.27997 5.30973 5.33910 5.39526 5.49059 5.58347 5.64191 5.89923 5.98454 6.14692 6.37784 6.42677 6.87900 7.04732 7.10497 7.44930 7.62323 8.96153 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.002989 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.312288 B = 9364.218997 C =10040.737126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.708 5.708 5 C 0.519 3.481 6 O -0.570 6.570 7 C 0.117 3.883 8 N -0.732 5.732 9 C 0.698 3.302 10 O -0.632 6.632 11 N -0.626 5.626 12 C 0.110 3.890 13 C -0.126 4.126 14 C -0.104 4.104 15 C 0.037 3.963 16 H -0.015 1.015 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.914 5.914 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.143 3.857 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.418 0.582 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.409 0.591 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.260 0.740 44 H 0.079 0.921 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.082 14.830 13.597 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.361 5.361 5 C 0.305 3.695 6 O -0.450 6.450 7 C -0.011 4.011 8 N -0.394 5.394 9 C 0.399 3.601 10 O -0.513 6.513 11 N -0.361 5.361 12 C -0.013 4.013 13 C -0.164 4.164 14 C -0.142 4.142 15 C 0.018 3.982 16 H 0.003 0.997 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.784 3.216 22 H -0.194 1.194 23 H -0.214 1.214 24 H -0.192 1.192 25 C 0.020 3.980 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.255 0.745 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.142 14.720 13.425 23.331 hybrid contribution 0.379 -0.666 -1.048 1.298 sum -11.763 14.054 12.377 22.115 Atomic orbital electron populations 1.22037 0.91566 1.03204 1.04299 1.21092 0.95826 0.92797 0.87467 1.22161 1.00581 0.95688 1.03460 1.45947 1.16556 1.55477 1.18103 1.20452 0.82239 0.78219 0.88567 1.90671 1.57243 1.61210 1.35854 1.20966 0.84403 0.99617 0.96084 1.44824 1.17957 1.59967 1.16691 1.16017 0.81710 0.78916 0.83445 1.90889 1.67880 1.63470 1.29042 1.47666 1.11291 1.62277 1.14915 1.21832 0.97934 0.98196 0.83307 1.21905 0.99391 0.96007 0.99074 1.21506 0.97824 0.99990 0.94866 1.18848 0.93972 0.91936 0.93474 0.99716 1.21473 0.96812 1.41332 0.97888 0.91916 1.25913 0.96221 0.95997 1.00896 1.70093 1.14427 1.48178 1.22530 0.85605 0.78774 0.79181 0.78060 1.19415 1.21439 1.19175 1.21539 0.93756 0.93085 0.89584 0.91881 0.90589 0.89651 0.91229 0.94504 0.91279 0.90096 0.74499 0.88223 0.87769 0.75025 0.90045 0.89165 0.87879 0.93388 0.92226 0.92888 0.93114 0.90229 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.38 71.98 0.68 -0.40 16 2 C 0.13 1.71 3.18 44.99 0.14 1.86 16 3 C -0.16 -2.01 9.48 71.98 0.68 -1.32 16 4 N -0.71 -10.24 5.08 -442.53 -2.25 -12.48 16 5 C 0.52 11.50 7.86 87.65 0.69 12.19 16 6 O -0.57 -16.32 15.33 -3.05 -0.05 -16.37 16 7 C 0.12 2.94 6.16 85.63 0.53 3.47 16 8 N -0.73 -23.65 5.44 -482.31 -2.62 -26.27 16 9 C 0.70 29.98 8.30 179.05 1.49 31.46 16 10 O -0.63 -32.96 15.77 -3.99 -0.06 -33.02 16 11 N -0.63 -26.56 2.98 -837.76 -2.50 -29.05 16 12 C 0.11 3.46 6.39 86.36 0.55 4.01 16 13 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 14 C -0.10 -4.17 5.11 30.62 0.16 -4.01 16 15 C 0.04 1.93 2.24 -11.61 -0.03 1.90 16 16 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 17 C -0.54 -30.03 8.57 25.60 0.22 -29.81 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.53 5.31 84.65 0.45 0.98 16 20 N -0.91 -56.31 11.39 21.45 0.24 -56.07 16 21 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 C 0.14 7.36 5.39 86.22 0.46 7.83 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 1.21 7.58 -2.39 -0.02 1.19 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.42 3.68 8.60 -92.71 -0.80 2.88 16 34 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.41 12.12 4.93 -92.71 -0.46 11.66 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 2.39 5.65 -2.39 -0.01 2.37 16 39 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.08 4.86 5.11 -2.39 -0.01 4.85 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -77.64 360.32 0.74 -76.90 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.26 Total: 25.32 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.21 Total: 24.33 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -7.12 Total: -123.87 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.11 Total: -49.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.64 0.74 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595426146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.174 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds