Wall clock time and date at job start Tue Mar 31 2020 04:14:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52997 * 109.47119 * 2 1
4 4 N 1.46502 * 109.47225 * 180.02562 * 3 2 1
5 5 C 1.34773 * 120.00198 * 180.02562 * 4 3 2
6 6 O 1.21280 * 120.00021 * 359.97438 * 5 4 3
7 7 C 1.50704 * 119.99772 * 179.97438 * 5 4 3
8 8 N 1.46501 * 109.46697 * 179.97438 * 7 5 4
9 9 C 1.34786 * 119.99406 * 179.97438 * 8 7 5
10 10 O 1.21582 * 120.00125 * 354.70808 * 9 8 7
11 11 N 1.34780 * 119.99499 * 174.70867 * 9 8 7
12 12 C 1.46927 * 120.63134 * 4.74917 * 11 9 8
13 13 C 1.52763 * 109.00727 * 233.58509 * 12 11 9
14 14 C 1.53037 * 109.38412 * 305.58762 * 13 12 11
15 15 C 1.53039 * 109.53557 * 61.24412 * 14 13 12
16 16 H 1.08998 * 109.50161 * 58.58692 * 15 14 13
17 17 C 1.50699 * 109.49630 * 178.68367 * 15 14 13
18 18 H 1.07996 * 120.00489 * 5.24257 * 17 15 14
19 19 C 1.37885 * 120.00045 * 185.24559 * 17 15 14
20 20 N 1.31514 * 119.99638 * 355.11643 * 19 17 15
21 21 Si 1.86794 * 119.99975 * 175.12404 * 19 17 15
22 22 H 1.48502 * 109.47349 * 94.99941 * 21 19 17
23 23 H 1.48501 * 109.46782 * 214.99524 * 21 19 17
24 24 H 1.48494 * 109.47184 * 334.99187 * 21 19 17
25 25 C 1.46928 * 120.62991 * 185.03363 * 11 9 8
26 26 H 1.09005 * 109.46712 * 299.99799 * 1 2 3
27 27 H 1.08996 * 109.47070 * 59.99610 * 1 2 3
28 28 H 1.08999 * 109.47299 * 180.02562 * 1 2 3
29 29 H 1.09005 * 109.46712 * 240.00201 * 2 1 3
30 30 H 1.08996 * 109.47070 * 120.00390 * 2 1 3
31 31 H 1.08997 * 109.47323 * 60.00198 * 3 2 1
32 32 H 1.09005 * 109.47323 * 299.99868 * 3 2 1
33 33 H 0.97001 * 119.99634 * 359.97438 * 4 3 2
34 34 H 1.09005 * 109.47153 * 60.00077 * 7 5 4
35 35 H 1.08999 * 109.47451 * 299.99987 * 7 5 4
36 36 H 0.96993 * 120.00130 * 359.72331 * 8 7 5
37 37 H 1.09001 * 109.58847 * 353.42363 * 12 11 9
38 38 H 1.08997 * 109.58519 * 113.84616 * 12 11 9
39 39 H 1.09006 * 109.56230 * 185.55230 * 13 12 11
40 40 H 1.09000 * 109.38438 * 65.51964 * 13 12 11
41 41 H 1.09001 * 109.46208 * 301.22531 * 14 13 12
42 42 H 1.08999 * 109.44628 * 181.25098 * 14 13 12
43 43 H 0.97000 * 119.99692 * 180.02562 * 20 19 17
44 44 H 1.08998 * 109.58593 * 246.15846 * 25 11 9
45 45 H 1.09003 * 109.58455 * 6.58252 * 25 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4425 -0.0006
5 6 4.1789 2.6097 -0.0002
6 8 3.5726 3.6600 0.0002
7 6 5.6860 2.6096 -0.0003
8 7 6.1743 3.9908 -0.0004
9 6 7.4995 4.2370 0.0001
10 8 8.2886 3.3173 0.0977
11 7 7.9497 5.5028 -0.1077
12 6 7.0106 6.6327 -0.1219
13 6 7.2792 7.4873 -1.3593
14 6 8.7541 7.8950 -1.3847
15 6 9.6300 6.6424 -1.4613
16 1 9.3744 6.0737 -2.3553
17 6 11.0808 7.0460 -1.5187
18 1 11.3567 8.0852 -1.4172
19 6 12.0561 6.0885 -1.7011
20 7 11.7300 4.8147 -1.7287
21 14 13.8404 6.6005 -1.9088
22 1 14.5284 6.5423 -0.5940
23 1 14.5122 5.6792 -2.8602
24 1 13.8992 7.9870 -2.4373
25 6 9.3885 5.7786 -0.2194
26 1 -0.3633 0.5138 0.8901
27 1 -0.3633 0.5139 -0.8899
28 1 -0.3634 -1.0276 0.0005
29 1 1.8933 -0.5138 -0.8901
30 1 1.8934 -0.5139 0.8899
31 1 1.6768 1.9563 0.8900
32 1 1.6767 1.9564 -0.8900
33 1 3.9900 0.6024 -0.0006
34 1 6.0493 2.0960 -0.8905
35 1 6.0494 2.0954 0.8895
36 1 5.5440 4.7280 -0.0045
37 1 5.9877 6.2574 -0.1537
38 1 7.1525 7.2371 0.7739
39 1 6.6553 8.3806 -1.3284
40 1 7.0455 6.9111 -2.2546
41 1 8.9930 8.4503 -0.4777
42 1 8.9420 8.5232 -2.2554
43 1 12.4161 4.1411 -1.8566
44 1 9.7283 6.3118 0.6685
45 1 9.9341 4.8399 -0.3155
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595426931.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:14:41
Heat of formation + Delta-G solvation = -76.548973 kcal
Electronic energy + Delta-G solvation = -24279.096476 eV
Core-core repulsion = 20717.146323 eV
Total energy + Delta-G solvation = -3561.950152 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.24885 -39.33367 -36.84657 -36.15604 -34.10869 -33.23818 -32.94441 -31.67589
-29.78761 -28.33089 -25.92577 -24.99201 -23.92628 -22.08028 -21.76084 -20.76792
-20.04362 -18.97008 -17.81770 -16.67473 -16.52760 -16.30664 -16.06011 -15.43669
-15.40257 -14.62207 -14.43788 -14.19667 -13.68134 -13.48769 -13.45275 -13.27537
-13.07907 -12.65158 -12.53515 -12.50258 -12.41684 -11.94940 -11.84033 -11.59975
-11.33836 -10.98655 -10.83966 -10.48006 -10.34588 -10.20422 -10.14526 -9.81145
-9.46459 -9.43080 -9.03478 -8.89388 -8.78208 -8.42229 -7.60190 -5.95993
-4.03774 2.37061 2.67058 3.32847 3.39880 3.41410 3.44474 3.85821
4.36358 4.42112 4.49362 4.51930 4.54619 4.78932 5.15890 5.18953
5.33254 5.34546 5.37796 5.38628 5.40803 5.55852 5.59007 5.66683
5.71926 5.75141 6.06324 6.08637 6.23877 6.38431 6.62905 6.70076
6.72414 6.86967 7.03623 7.10958 7.16547 7.37935 7.55531 7.77826
7.90039 7.96393 8.08653 8.44810 8.61022 9.00518 9.25318 9.61477
11.09900
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.029650 B = 0.002800 C = 0.002623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.130135 B = 9996.838109 C =10671.324849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.137 4.137
3 C 0.118 3.882
4 N -0.730 5.730
5 C 0.511 3.489
6 O -0.537 6.537
7 C 0.122 3.878
8 N -0.748 5.748
9 C 0.704 3.296
10 O -0.587 6.587
11 N -0.620 5.620
12 C 0.114 3.886
13 C -0.134 4.134
14 C -0.110 4.110
15 C 0.039 3.961
16 H 0.031 0.969
17 C -0.520 4.520
18 H 0.058 0.942
19 C 0.062 3.938
20 N -0.879 5.879
21 Si 0.892 3.108
22 H -0.281 1.281
23 H -0.286 1.286
24 H -0.274 1.274
25 C 0.131 3.869
26 H 0.058 0.942
27 H 0.058 0.942
28 H 0.060 0.940
29 H 0.070 0.930
30 H 0.070 0.930
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.404 0.596
34 H 0.095 0.905
35 H 0.095 0.905
36 H 0.403 0.597
37 H 0.064 0.936
38 H 0.061 0.939
39 H 0.059 0.941
40 H 0.059 0.941
41 H 0.049 0.951
42 H 0.051 0.949
43 H 0.263 0.737
44 H 0.040 0.960
45 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.262 -7.581 3.845 21.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.175 4.175
3 C -0.006 4.006
4 N -0.383 5.383
5 C 0.297 3.703
6 O -0.414 6.414
7 C -0.006 4.006
8 N -0.411 5.411
9 C 0.406 3.594
10 O -0.464 6.464
11 N -0.356 5.356
12 C -0.010 4.010
13 C -0.172 4.172
14 C -0.147 4.147
15 C 0.020 3.980
16 H 0.049 0.951
17 C -0.559 4.559
18 H 0.076 0.924
19 C -0.141 4.141
20 N -0.516 5.516
21 Si 0.720 3.280
22 H -0.207 1.207
23 H -0.212 1.212
24 H -0.199 1.199
25 C 0.010 3.990
26 H 0.077 0.923
27 H 0.077 0.923
28 H 0.079 0.921
29 H 0.089 0.911
30 H 0.088 0.912
31 H 0.086 0.914
32 H 0.087 0.913
33 H 0.239 0.761
34 H 0.113 0.887
35 H 0.113 0.887
36 H 0.242 0.758
37 H 0.082 0.918
38 H 0.079 0.921
39 H 0.078 0.922
40 H 0.078 0.922
41 H 0.068 0.932
42 H 0.070 0.930
43 H 0.073 0.927
44 H 0.059 0.941
45 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -20.024 -7.667 3.885 21.791
hybrid contribution 0.808 0.128 -0.146 0.831
sum -19.216 -7.539 3.740 20.978
Atomic orbital electron populations
1.21680 0.94494 1.02216 1.02386 1.21748 0.97050 0.95749 1.02927
1.21425 0.79255 0.97279 1.02610 1.45910 1.07507 1.08729 1.76189
1.20758 0.90279 0.83799 0.75435 1.90689 1.70170 1.31272 1.49268
1.20755 0.89189 0.86076 1.04623 1.45001 1.06616 1.07122 1.82394
1.15833 0.81386 0.84019 0.78200 1.90910 1.54646 1.43177 1.57701
1.47768 1.09533 1.02791 1.75506 1.21444 0.92021 0.88889 0.98691
1.21874 0.99019 0.98640 0.97670 1.21620 0.92637 0.99969 1.00521
1.19010 0.94004 0.90870 0.94161 0.95128 1.21075 0.90563 0.93588
1.50655 0.92373 1.25065 0.99051 0.94983 0.94959 1.69929 1.33451
0.99611 1.48644 0.86588 0.85104 0.78406 0.77951 1.20745 1.21213
1.19908 1.22214 0.74700 1.03880 0.98180 0.92331 0.92297 0.92127
0.91134 0.91169 0.91376 0.91347 0.76117 0.88729 0.88676 0.75798
0.91812 0.92069 0.92249 0.92197 0.93221 0.93017 0.92736 0.94146
0.86376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16
2 C -0.14 -0.66 6.05 -26.73 -0.16 -0.83 16
3 C 0.12 0.87 5.67 -4.04 -0.02 0.85 16
4 N -0.73 -5.97 5.56 -60.29 -0.33 -6.30 16
5 C 0.51 6.06 7.90 -10.99 -0.09 5.97 16
6 O -0.54 -8.13 15.67 5.56 0.09 -8.04 16
7 C 0.12 1.59 6.16 -5.19 -0.03 1.56 16
8 N -0.75 -12.37 5.44 -66.41 -0.36 -12.73 16
9 C 0.70 14.90 8.30 -86.91 -0.72 14.18 16
10 O -0.59 -14.65 15.79 5.29 0.08 -14.57 16
11 N -0.62 -13.05 2.98 -178.76 -0.53 -13.58 16
12 C 0.11 1.91 6.40 -3.93 -0.03 1.88 16
13 C -0.13 -2.27 6.06 -26.83 -0.16 -2.43 16
14 C -0.11 -2.24 5.11 -26.69 -0.14 -2.38 16
15 C 0.04 0.98 2.20 -91.65 -0.20 0.78 16
16 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16
17 C -0.52 -14.25 8.49 -34.44 -0.29 -14.55 16
18 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16
19 C 0.06 1.75 5.36 -17.82 -0.10 1.65 16
20 N -0.88 -25.93 11.61 55.43 0.64 -25.28 16
21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16
22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16
24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
25 C 0.13 3.25 5.46 -3.71 -0.02 3.23 16
26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.40 2.21 8.47 -40.82 -0.35 1.87 16
34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16
35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
36 H 0.40 6.29 4.89 -40.82 -0.20 6.09 16
37 H 0.06 0.93 5.57 -51.93 -0.29 0.64 16
38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16
43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.12 3.42 5.38 -51.93 -0.28 3.14 16
LS Contribution 361.62 15.07 5.45 5.45
Total: -1.00 -34.08 361.62 -9.00 -43.08
By element:
Atomic # 1 Polarization: 13.36 SS G_CDS: -7.42 Total: 5.94 kcal
Atomic # 6 Polarization: 11.20 SS G_CDS: -1.59 Total: 9.61 kcal
Atomic # 7 Polarization: -57.31 SS G_CDS: -0.59 Total: -57.90 kcal
Atomic # 8 Polarization: -22.77 SS G_CDS: 0.17 Total: -22.60 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -34.08 -9.00 -43.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595426931.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.468 kcal
(2) G-P(sol) polarization free energy of solvation -34.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.549 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds