Wall clock time and date at job start Tue Mar 31 2020 04:14:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52997 * 109.47119 * 2 1
4 4 N 1.46502 * 109.47225 * 180.02562 * 3 2 1
5 5 C 1.34773 * 120.00198 * 180.02562 * 4 3 2
6 6 O 1.21280 * 120.00021 * 359.97438 * 5 4 3
7 7 C 1.50704 * 119.99772 * 179.97438 * 5 4 3
8 8 N 1.46501 * 109.46697 * 179.97438 * 7 5 4
9 9 C 1.34786 * 119.99406 * 179.97438 * 8 7 5
10 10 O 1.21582 * 120.00125 * 354.70808 * 9 8 7
11 11 N 1.34780 * 119.99499 * 174.70867 * 9 8 7
12 12 C 1.46927 * 120.63134 * 4.74917 * 11 9 8
13 13 C 1.52763 * 109.00727 * 233.58509 * 12 11 9
14 14 C 1.53037 * 109.38412 * 305.58762 * 13 12 11
15 15 C 1.53039 * 109.53557 * 61.24412 * 14 13 12
16 16 H 1.08998 * 109.50161 * 58.58692 * 15 14 13
17 17 C 1.50699 * 109.49630 * 178.68367 * 15 14 13
18 18 H 1.07996 * 120.00489 * 5.24257 * 17 15 14
19 19 C 1.37885 * 120.00045 * 185.24559 * 17 15 14
20 20 N 1.31514 * 119.99638 * 355.11643 * 19 17 15
21 21 Si 1.86794 * 119.99975 * 175.12404 * 19 17 15
22 22 H 1.48502 * 109.47349 * 94.99941 * 21 19 17
23 23 H 1.48501 * 109.46782 * 214.99524 * 21 19 17
24 24 H 1.48494 * 109.47184 * 334.99187 * 21 19 17
25 25 C 1.46928 * 120.62991 * 185.03363 * 11 9 8
26 26 H 1.09005 * 109.46712 * 299.99799 * 1 2 3
27 27 H 1.08996 * 109.47070 * 59.99610 * 1 2 3
28 28 H 1.08999 * 109.47299 * 180.02562 * 1 2 3
29 29 H 1.09005 * 109.46712 * 240.00201 * 2 1 3
30 30 H 1.08996 * 109.47070 * 120.00390 * 2 1 3
31 31 H 1.08997 * 109.47323 * 60.00198 * 3 2 1
32 32 H 1.09005 * 109.47323 * 299.99868 * 3 2 1
33 33 H 0.97001 * 119.99634 * 359.97438 * 4 3 2
34 34 H 1.09005 * 109.47153 * 60.00077 * 7 5 4
35 35 H 1.08999 * 109.47451 * 299.99987 * 7 5 4
36 36 H 0.96993 * 120.00130 * 359.72331 * 8 7 5
37 37 H 1.09001 * 109.58847 * 353.42363 * 12 11 9
38 38 H 1.08997 * 109.58519 * 113.84616 * 12 11 9
39 39 H 1.09006 * 109.56230 * 185.55230 * 13 12 11
40 40 H 1.09000 * 109.38438 * 65.51964 * 13 12 11
41 41 H 1.09001 * 109.46208 * 301.22531 * 14 13 12
42 42 H 1.08999 * 109.44628 * 181.25098 * 14 13 12
43 43 H 0.97000 * 119.99692 * 180.02562 * 20 19 17
44 44 H 1.08998 * 109.58593 * 246.15846 * 25 11 9
45 45 H 1.09003 * 109.58455 * 6.58252 * 25 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4425 -0.0006
5 6 4.1789 2.6097 -0.0002
6 8 3.5726 3.6600 0.0002
7 6 5.6860 2.6096 -0.0003
8 7 6.1743 3.9908 -0.0004
9 6 7.4995 4.2370 0.0001
10 8 8.2886 3.3173 0.0977
11 7 7.9497 5.5028 -0.1077
12 6 7.0106 6.6327 -0.1219
13 6 7.2792 7.4873 -1.3593
14 6 8.7541 7.8950 -1.3847
15 6 9.6300 6.6424 -1.4613
16 1 9.3744 6.0737 -2.3553
17 6 11.0808 7.0460 -1.5187
18 1 11.3567 8.0852 -1.4172
19 6 12.0561 6.0885 -1.7011
20 7 11.7300 4.8147 -1.7287
21 14 13.8404 6.6005 -1.9088
22 1 14.5284 6.5423 -0.5940
23 1 14.5122 5.6792 -2.8602
24 1 13.8992 7.9870 -2.4373
25 6 9.3885 5.7786 -0.2194
26 1 -0.3633 0.5138 0.8901
27 1 -0.3633 0.5139 -0.8899
28 1 -0.3634 -1.0276 0.0005
29 1 1.8933 -0.5138 -0.8901
30 1 1.8934 -0.5139 0.8899
31 1 1.6768 1.9563 0.8900
32 1 1.6767 1.9564 -0.8900
33 1 3.9900 0.6024 -0.0006
34 1 6.0493 2.0960 -0.8905
35 1 6.0494 2.0954 0.8895
36 1 5.5440 4.7280 -0.0045
37 1 5.9877 6.2574 -0.1537
38 1 7.1525 7.2371 0.7739
39 1 6.6553 8.3806 -1.3284
40 1 7.0455 6.9111 -2.2546
41 1 8.9930 8.4503 -0.4777
42 1 8.9420 8.5232 -2.2554
43 1 12.4161 4.1411 -1.8566
44 1 9.7283 6.3118 0.6685
45 1 9.9341 4.8399 -0.3155
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595426931.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:14:40
Heat of formation + Delta-G solvation = -101.040372 kcal
Electronic energy + Delta-G solvation = -24280.158502 eV
Core-core repulsion = 20717.146323 eV
Total energy + Delta-G solvation = -3563.012179 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.54135 -40.63349 -38.49727 -36.91209 -35.65507 -35.03588 -33.68828 -33.34650
-31.57906 -29.43244 -27.07313 -26.67722 -25.44933 -23.45114 -22.58586 -21.84456
-21.56185 -20.50724 -19.34028 -18.33047 -17.70595 -17.46961 -17.17346 -16.78836
-16.52220 -16.38135 -15.65356 -15.46967 -15.21415 -15.12167 -14.64290 -14.40162
-14.20455 -14.12450 -13.81338 -13.65451 -13.53284 -13.22883 -12.94312 -12.89358
-12.65181 -12.32018 -12.20548 -12.03495 -11.84688 -11.74671 -11.62889 -11.25330
-11.14801 -10.92584 -10.84317 -10.52748 -10.32408 -10.14736 -9.29216 -8.09209
-6.25082 1.41591 1.42182 1.43012 1.53092 1.55309 2.17466 2.24162
2.44207 3.01943 3.20845 3.62178 3.92855 4.02674 4.08325 4.15673
4.26302 4.33490 4.35931 4.37623 4.59921 4.67888 4.74247 4.75465
4.81019 4.84409 4.86551 5.10806 5.16959 5.24967 5.25617 5.26084
5.28325 5.30712 5.38854 5.45392 5.58631 5.62663 5.88263 5.96838
6.12922 6.36865 6.39134 6.88048 7.02836 7.07872 7.44420 7.61064
8.95373
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.029650 B = 0.002800 C = 0.002623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.130135 B = 9996.838109 C =10671.324849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.129 4.129
3 C 0.116 3.884
4 N -0.712 5.712
5 C 0.518 3.482
6 O -0.571 6.571
7 C 0.117 3.883
8 N -0.733 5.733
9 C 0.699 3.301
10 O -0.633 6.633
11 N -0.626 5.626
12 C 0.110 3.890
13 C -0.126 4.126
14 C -0.104 4.104
15 C 0.038 3.962
16 H -0.012 1.012
17 C -0.535 4.535
18 H 0.063 0.937
19 C 0.009 3.991
20 N -0.915 5.915
21 Si 0.959 3.041
22 H -0.276 1.276
23 H -0.287 1.287
24 H -0.263 1.263
25 C 0.145 3.855
26 H 0.056 0.944
27 H 0.055 0.945
28 H 0.069 0.931
29 H 0.078 0.922
30 H 0.079 0.921
31 H 0.061 0.939
32 H 0.059 0.941
33 H 0.419 0.581
34 H 0.100 0.900
35 H 0.107 0.893
36 H 0.409 0.591
37 H 0.091 0.909
38 H 0.081 0.919
39 H 0.103 0.897
40 H 0.048 0.952
41 H 0.058 0.942
42 H 0.053 0.947
43 H 0.260 0.740
44 H 0.037 0.963
45 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.846 -6.966 4.244 23.319
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.166 4.166
3 C -0.007 4.007
4 N -0.364 5.364
5 C 0.304 3.696
6 O -0.451 6.451
7 C -0.010 4.010
8 N -0.395 5.395
9 C 0.400 3.600
10 O -0.514 6.514
11 N -0.362 5.362
12 C -0.013 4.013
13 C -0.164 4.164
14 C -0.142 4.142
15 C 0.019 3.981
16 H 0.007 0.993
17 C -0.573 4.573
18 H 0.081 0.919
19 C -0.191 4.191
20 N -0.553 5.553
21 Si 0.784 3.216
22 H -0.202 1.202
23 H -0.212 1.212
24 H -0.187 1.187
25 C 0.023 3.977
26 H 0.076 0.924
27 H 0.075 0.925
28 H 0.088 0.912
29 H 0.097 0.903
30 H 0.098 0.902
31 H 0.080 0.920
32 H 0.078 0.922
33 H 0.257 0.743
34 H 0.118 0.882
35 H 0.124 0.876
36 H 0.250 0.750
37 H 0.109 0.891
38 H 0.099 0.901
39 H 0.121 0.879
40 H 0.067 0.933
41 H 0.077 0.923
42 H 0.072 0.928
43 H 0.069 0.931
44 H 0.055 0.945
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -21.677 -7.064 4.285 23.198
hybrid contribution 1.226 -0.110 -0.269 1.260
sum -20.451 -7.173 4.016 22.041
Atomic orbital electron populations
1.21695 0.94131 1.02795 1.02249 1.21706 0.97239 0.93899 1.03793
1.21533 0.78286 0.99006 1.01865 1.45807 1.08062 1.08334 1.74229
1.20465 0.89502 0.84281 0.75391 1.90675 1.70474 1.32605 1.51353
1.20963 0.90336 0.84257 1.05474 1.44827 1.04812 1.08961 1.80918
1.16007 0.82467 0.83502 0.78004 1.90873 1.56198 1.44585 1.59760
1.47679 1.08793 1.04220 1.75464 1.21750 0.92254 0.87737 0.99532
1.21831 0.97091 1.00239 0.97223 1.21508 0.94137 0.97500 1.01036
1.18936 0.94246 0.92631 0.92336 0.99346 1.21500 0.92029 0.93756
1.50028 0.91910 1.25919 1.03538 0.94882 0.94755 1.70117 1.34587
1.00744 1.49894 0.85533 0.79775 0.78368 0.77923 1.20210 1.21238
1.18672 1.21642 0.76898 1.01414 0.97772 0.92442 0.92541 0.91177
0.90347 0.90199 0.92044 0.92237 0.74339 0.88246 0.87566 0.74994
0.89131 0.90076 0.87886 0.93302 0.92282 0.92831 0.93114 0.94474
0.90865
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16
2 C -0.13 -0.97 6.05 30.60 0.19 -0.79 16
3 C 0.12 1.54 5.67 86.38 0.49 2.03 16
4 N -0.71 -10.39 5.56 -463.06 -2.57 -12.96 16
5 C 0.52 11.58 7.90 87.66 0.69 12.28 16
6 O -0.57 -16.58 15.67 -3.03 -0.05 -16.63 16
7 C 0.12 2.96 6.16 85.63 0.53 3.49 16
8 N -0.73 -23.72 5.44 -482.27 -2.62 -26.34 16
9 C 0.70 29.92 8.30 179.05 1.49 31.41 16
10 O -0.63 -32.73 15.79 -3.97 -0.06 -32.80 16
11 N -0.63 -26.45 2.98 -837.72 -2.50 -28.94 16
12 C 0.11 3.44 6.40 86.22 0.55 3.99 16
13 C -0.13 -3.97 6.06 30.53 0.19 -3.78 16
14 C -0.10 -4.13 5.11 30.62 0.16 -3.97 16
15 C 0.04 1.95 2.20 -11.46 -0.03 1.93 16
16 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16
17 C -0.53 -29.78 8.49 25.60 0.22 -29.56 16
18 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16
19 C 0.01 0.49 5.36 84.66 0.45 0.94 16
20 N -0.91 -56.17 11.61 21.45 0.25 -55.92 16
21 Si 0.96 44.63 29.54 68.60 2.03 46.66 16
22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16
23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16
25 C 0.15 7.45 5.46 86.36 0.47 7.92 16
26 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16
27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16
28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16
29 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16
30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16
31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16
33 H 0.42 3.67 8.47 -92.71 -0.79 2.89 16
34 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16
35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16
36 H 0.41 12.14 4.89 -92.71 -0.45 11.69 16
37 H 0.09 2.38 5.57 -2.39 -0.01 2.36 16
38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16
39 H 0.10 2.43 8.14 -2.38 -0.02 2.42 16
40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16
44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16
45 H 0.07 4.46 5.38 -2.39 -0.01 4.45 16
Total: -1.00 -77.25 361.62 0.33 -76.92
By element:
Atomic # 1 Polarization: 24.74 SS G_CDS: -0.25 Total: 24.49 kcal
Atomic # 6 Polarization: 19.41 SS G_CDS: 6.11 Total: 25.52 kcal
Atomic # 7 Polarization: -116.72 SS G_CDS: -7.44 Total: -124.16 kcal
Atomic # 8 Polarization: -49.32 SS G_CDS: -0.11 Total: -49.43 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -77.25 0.33 -76.92 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595426931.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.124 kcal
(2) G-P(sol) polarization free energy of solvation -77.246 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.370 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds