Wall clock time and date at job start Tue Mar 31 2020 04:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47332 * 2 1 4 4 N 1.46499 * 109.46963 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99874 * 180.02562 * 4 3 2 6 6 O 1.21542 * 119.99856 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00155 * 180.02562 * 5 4 3 8 8 C 1.34768 * 119.99892 * 179.97438 * 7 5 4 9 9 O 1.21231 * 120.00224 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99879 * 179.97438 * 8 7 5 11 11 N 1.46904 * 109.47389 * 180.02562 * 10 8 7 12 12 C 1.46845 * 110.99944 * 293.95858 * 11 10 8 13 13 C 1.53043 * 109.52210 * 185.83768 * 12 11 10 14 14 C 1.53116 * 109.27758 * 300.81959 * 13 12 11 15 15 C 1.53116 * 109.16275 * 57.65365 * 14 13 12 16 16 H 1.09000 * 109.50088 * 62.32598 * 15 14 13 17 17 C 1.50695 * 109.50663 * 182.40727 * 15 14 13 18 18 H 1.08004 * 120.00546 * 120.27722 * 17 15 14 19 19 C 1.37885 * 119.99721 * 299.99973 * 17 15 14 20 20 N 1.31514 * 120.00035 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99853 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 C 1.46845 * 110.99821 * 58.16362 * 11 10 8 26 26 H 1.09001 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47048 * 299.99888 * 1 2 3 28 28 H 1.08997 * 109.46668 * 59.99597 * 1 2 3 29 29 H 1.08998 * 109.47048 * 240.00111 * 2 1 3 30 30 H 1.09002 * 109.47334 * 120.00658 * 2 1 3 31 31 H 1.09007 * 109.46653 * 60.00565 * 3 2 1 32 32 H 1.08991 * 109.47051 * 300.00283 * 3 2 1 33 33 H 0.96996 * 119.99899 * 0.02562 * 4 3 2 34 34 H 0.96996 * 119.99617 * 359.97438 * 7 5 4 35 35 H 1.09007 * 109.47180 * 60.00394 * 10 8 7 36 36 H 1.09000 * 109.47673 * 300.00167 * 10 8 7 37 37 H 1.08997 * 109.46241 * 65.82026 * 12 11 10 38 38 H 1.09000 * 109.45566 * 305.84428 * 12 11 10 39 39 H 1.08994 * 109.50257 * 180.87830 * 13 12 11 40 40 H 1.08998 * 109.53509 * 60.77802 * 13 12 11 41 41 H 1.09000 * 109.52021 * 297.75140 * 14 13 12 42 42 H 1.08995 * 109.57516 * 177.59426 * 14 13 12 43 43 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.46227 * 54.14426 * 25 11 10 45 45 H 1.08994 * 109.46508 * 294.17935 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5713 3.6622 0.0008 7 7 5.5268 2.6096 0.0013 8 6 6.2006 3.7767 0.0014 9 8 5.5945 4.8266 0.0019 10 6 7.7076 3.7767 0.0020 11 7 8.1974 5.1617 0.0027 12 6 7.8485 5.8438 -1.2501 13 6 8.4967 7.2299 -1.2754 14 6 8.0013 8.0416 -0.0753 15 6 8.3340 7.2863 1.2143 16 1 9.4152 7.1838 1.3073 17 6 7.7974 8.0499 2.3975 18 1 7.0756 7.5889 3.0555 19 6 8.2321 9.3351 2.6432 20 7 9.1147 9.8947 1.8447 21 14 7.5664 10.2820 4.1094 22 1 8.4268 10.0301 5.2933 23 1 7.5624 11.7344 3.8003 24 1 6.1807 9.8340 4.4002 25 6 7.6905 5.8985 1.1674 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9900 0.6024 0.0006 34 1 6.0117 1.7695 0.0013 35 1 8.0713 3.2627 -0.8878 36 1 8.0707 3.2630 0.8922 37 1 6.7656 5.9479 -1.3175 38 1 8.2104 5.2582 -2.0952 39 1 8.2248 7.7420 -2.1983 40 1 9.5805 7.1265 -1.2222 41 1 6.9225 8.1790 -0.1490 42 1 8.4924 9.0146 -0.0647 43 1 9.4202 10.7990 2.0174 44 1 7.9374 5.3527 2.0780 45 1 6.6084 6.0025 1.0886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:03 Heat of formation + Delta-G solvation = -64.727293 kcal Electronic energy + Delta-G solvation = -24670.155663 eV Core-core repulsion = 21108.718137 eV Total energy + Delta-G solvation = -3561.437526 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19547 -39.18805 -37.23733 -35.91258 -34.55671 -33.57112 -32.71700 -31.67448 -29.75000 -27.70803 -26.30870 -24.83572 -23.02824 -22.05781 -21.55204 -21.16448 -20.43975 -19.03384 -18.38696 -17.09475 -16.39438 -16.27189 -15.68180 -15.54370 -15.17039 -14.74168 -14.45437 -14.28359 -14.00143 -13.85677 -13.34709 -13.10233 -12.84661 -12.48052 -12.31437 -12.14014 -12.04666 -11.66366 -11.57395 -11.34232 -11.30774 -10.95056 -10.84496 -10.56535 -10.53050 -10.15232 -9.88016 -9.85057 -9.60453 -9.35572 -9.29994 -8.94362 -8.58650 -8.19304 -7.51802 -5.86318 -3.91072 2.18134 2.29927 3.29632 3.38935 3.45071 3.50437 3.78716 4.37822 4.39785 4.53538 4.57554 4.78490 4.81283 5.19608 5.21281 5.25607 5.32498 5.43727 5.47076 5.56863 5.68823 5.75055 5.75668 6.00657 6.04125 6.14097 6.20506 6.43201 6.44019 6.61784 6.68009 6.86635 6.94674 7.14535 7.32525 7.37566 7.49506 7.67448 7.80321 7.89188 8.17431 8.22352 8.30853 8.33430 8.61810 9.12456 9.72240 11.19834 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.003242 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.561451 B = 8635.623344 C = 9586.457058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.133 3.867 4 N -0.744 5.744 5 C 0.688 3.312 6 O -0.529 6.529 7 N -0.695 5.695 8 C 0.474 3.526 9 O -0.446 6.446 10 C 0.040 3.960 11 N -0.511 5.511 12 C 0.048 3.952 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.058 3.942 16 H 0.030 0.970 17 C -0.509 4.509 18 H 0.052 0.948 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.044 3.956 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.405 0.595 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.258 0.742 44 H 0.052 0.948 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 -23.700 -6.522 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.009 3.991 4 N -0.402 5.402 5 C 0.388 3.612 6 O -0.400 6.400 7 N -0.363 5.363 8 C 0.259 3.741 9 O -0.312 6.312 10 C -0.093 4.093 11 N -0.233 5.233 12 C -0.080 4.080 13 C -0.152 4.152 14 C -0.149 4.149 15 C 0.039 3.961 16 H 0.048 0.952 17 C -0.548 4.548 18 H 0.071 0.929 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.082 4.082 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.240 0.760 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.907 -21.797 -6.510 24.430 hybrid contribution -0.758 -0.508 0.760 1.187 sum -9.665 -22.305 -5.751 24.980 Atomic orbital electron populations 1.21679 0.94389 1.02188 1.02566 1.21734 0.97111 0.95693 1.02708 1.21325 0.77879 0.97107 1.02813 1.45305 1.07601 1.06963 1.80325 1.16330 0.81765 0.84697 0.78431 1.91096 1.67072 1.29754 1.52087 1.44672 1.06495 1.11984 1.73150 1.23194 0.92433 0.82681 0.75816 1.90826 1.70014 1.29657 1.40737 1.22521 0.86307 0.95877 1.04639 1.62535 1.56249 0.99613 1.04865 1.22238 0.99577 0.95999 0.90147 1.21634 1.00160 0.94075 0.99331 1.21635 0.98858 1.01117 0.93247 1.18622 0.96150 0.88068 0.93234 0.95161 1.21153 1.24520 0.98881 1.10209 0.92934 1.24926 0.95044 0.97553 0.96393 1.69897 1.31242 1.14511 1.37292 0.86638 0.79421 0.79126 0.83080 1.20804 1.21306 1.19992 1.22704 0.99838 0.96725 0.88954 0.92128 0.92197 0.92245 0.91289 0.91242 0.91330 0.91385 0.77015 0.76034 0.88001 0.87560 0.93218 0.92886 0.93546 0.92331 0.94882 0.89211 0.93192 0.92962 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.13 -0.67 6.05 -26.73 -0.16 -0.83 16 3 C 0.13 1.11 5.67 -4.04 -0.02 1.08 16 4 N -0.74 -6.40 5.56 -65.23 -0.36 -6.76 16 5 C 0.69 9.41 8.50 -86.92 -0.74 8.67 16 6 O -0.53 -10.55 14.74 -18.48 -0.27 -10.82 16 7 N -0.70 -7.75 5.24 -15.78 -0.08 -7.83 16 8 C 0.47 7.34 7.18 -10.99 -0.08 7.26 16 9 O -0.45 -9.63 10.02 -18.21 -0.18 -9.81 16 10 C 0.04 0.52 5.86 -4.97 -0.03 0.50 16 11 N -0.51 -9.56 4.86 -236.11 -1.15 -10.71 16 12 C 0.05 0.91 5.09 -3.83 -0.02 0.89 16 13 C -0.11 -2.39 6.09 -26.65 -0.16 -2.56 16 14 C -0.11 -2.83 5.02 -26.61 -0.13 -2.96 16 15 C 0.06 1.54 2.26 -91.69 -0.21 1.34 16 16 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.51 -14.84 8.56 -34.44 -0.29 -15.13 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -26.43 11.35 55.43 0.63 -25.80 16 21 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.04 1.01 4.20 -3.83 -0.02 0.99 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 1.84 8.49 -40.82 -0.35 1.49 16 34 H 0.41 2.27 8.71 -40.82 -0.36 1.92 16 35 H 0.10 0.99 8.06 -51.93 -0.42 0.57 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.06 6.00 -51.93 -0.31 0.74 16 38 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 2.52 6.15 -51.93 -0.32 2.20 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 44 H 0.05 1.16 8.12 -51.93 -0.42 0.73 16 45 H 0.06 1.55 5.36 -51.93 -0.28 1.27 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -37.96 355.07 -10.17 -48.12 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.48 Total: 0.32 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.59 Total: 0.58 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.96 Total: -51.10 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.45 Total: -20.63 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.96 -10.17 -48.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.606 kcal (2) G-P(sol) polarization free energy of solvation -37.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds