Wall clock time and date at job start Tue Mar 31 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46832 * 2 1 4 4 N 1.46496 * 109.46694 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00101 * 269.99586 * 4 3 2 6 6 C 1.34786 * 120.00098 * 89.99939 * 4 3 2 7 7 O 1.21349 * 119.99623 * 5.23274 * 6 4 3 8 8 C 1.49454 * 119.99822 * 184.95355 * 6 4 3 9 9 O 1.21341 * 119.99835 * 274.89332 * 8 6 4 10 10 N 1.34772 * 119.99520 * 94.89582 * 8 6 4 11 11 C 1.47086 * 120.87890 * 184.76260 * 10 8 6 12 12 C 1.53687 * 108.27780 * 128.75541 * 11 10 8 13 13 N 1.46901 * 109.25744 * 54.08239 * 12 11 10 14 14 C 1.46903 * 111.00277 * 172.60812 * 13 12 11 15 15 C 1.50704 * 109.46982 * 294.30450 * 14 13 12 16 16 H 1.07996 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99839 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47069 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47194 * 119.99581 * 19 17 15 22 22 H 1.48505 * 109.47111 * 239.99813 * 19 17 15 23 23 C 1.46896 * 111.26893 * 296.75493 * 13 12 11 24 24 C 1.47082 * 120.88532 * 5.04335 * 10 8 6 25 25 H 1.08996 * 109.47530 * 299.99892 * 1 2 3 26 26 H 1.09001 * 109.47107 * 60.00259 * 1 2 3 27 27 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47530 * 240.00108 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99741 * 2 1 3 30 30 H 1.08996 * 109.46975 * 59.99768 * 3 2 1 31 31 H 1.08998 * 109.47023 * 299.99241 * 3 2 1 32 32 H 1.09003 * 109.47782 * 264.84967 * 5 4 3 33 33 H 1.09003 * 109.47571 * 24.85214 * 5 4 3 34 34 H 1.09009 * 109.47650 * 144.84969 * 5 4 3 35 35 H 1.09001 * 109.62356 * 248.52828 * 11 10 8 36 36 H 1.08996 * 109.62271 * 9.10036 * 11 10 8 37 37 H 1.09003 * 109.64824 * 294.08255 * 12 11 10 38 38 H 1.08999 * 109.42409 * 173.94999 * 12 11 10 39 39 H 1.09005 * 109.46909 * 54.30342 * 14 13 12 40 40 H 1.08993 * 109.47392 * 174.29684 * 14 13 12 41 41 H 0.97002 * 119.99601 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.49818 * 303.14675 * 23 13 12 43 43 H 1.09001 * 109.49430 * 183.06160 * 23 13 12 44 44 H 1.08999 * 109.62680 * 350.89008 * 24 10 8 45 45 H 1.08994 * 109.63009 * 111.47667 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.1793 1.4424 -1.1664 7 8 3.5768 1.5381 -2.2153 8 6 5.6697 1.3306 -1.1681 9 8 6.3528 2.3245 -1.0341 10 7 6.2548 0.1258 -1.3184 11 6 7.7149 -0.0219 -1.2193 12 6 8.0185 -1.1525 -0.2236 13 7 7.2984 -2.3656 -0.6337 14 6 7.6962 -3.5169 0.1875 15 6 9.1437 -3.8445 -0.0744 16 1 9.7113 -3.2565 -0.7804 17 6 9.7432 -4.8955 0.5867 18 7 9.0519 -5.6118 1.4462 19 14 11.5371 -5.3019 0.2617 20 1 12.0858 -4.3535 -0.7408 21 1 12.3077 -5.1871 1.5260 22 1 11.6440 -6.6886 -0.2591 23 6 5.8442 -2.1633 -0.5873 24 6 5.4509 -1.0751 -1.5920 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 4.4984 2.4664 1.5381 33 1 3.6107 1.0111 2.0504 34 1 5.1463 0.8511 1.1647 35 1 8.1248 -0.2717 -2.1979 36 1 8.1537 0.9098 -0.8624 37 1 7.6956 -0.8580 0.7750 38 1 9.0902 -1.3508 -0.2160 39 1 7.5635 -3.2743 1.2419 40 1 7.0771 -4.3767 -0.0681 41 1 9.4737 -6.3509 1.9116 42 1 5.5516 -1.8547 0.4163 43 1 5.3391 -3.0946 -0.8437 44 1 4.3923 -0.8400 -1.4814 45 1 5.6475 -1.4242 -2.6056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601424321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:59 Heat of formation + Delta-G solvation = -57.732239 kcal Electronic energy + Delta-G solvation = -25274.763847 eV Core-core repulsion = 21713.629649 eV Total energy + Delta-G solvation = -3561.134197 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98827 -39.04264 -37.58688 -36.42480 -34.57738 -33.58484 -32.47201 -30.99030 -28.68310 -27.81729 -26.88883 -25.61696 -24.08310 -23.00736 -22.10144 -21.45757 -20.18099 -18.84888 -17.76293 -17.13553 -16.64841 -16.35907 -15.55580 -15.32742 -14.94333 -14.80849 -14.70069 -14.54521 -13.95784 -13.87997 -13.68989 -13.40620 -13.24850 -12.94758 -12.82691 -12.36005 -12.34852 -12.12212 -12.07341 -11.63894 -11.54211 -11.31445 -11.24661 -10.99156 -10.93538 -10.86075 -10.66881 -10.61879 -9.95657 -9.57197 -9.32678 -9.06657 -8.70673 -8.51947 -7.43558 -6.11751 -4.13691 1.97273 2.06319 2.57359 3.20589 3.26114 3.34231 3.38483 4.04453 4.34286 4.61392 4.65176 4.67850 4.77823 4.98883 5.07846 5.11328 5.16932 5.20853 5.27239 5.34223 5.37966 5.45393 5.48451 5.50348 5.69206 5.73800 5.77452 5.80819 5.88172 5.91792 6.08713 6.14277 6.24745 6.39183 6.54107 6.83188 7.12853 7.15812 7.22247 7.61651 7.67915 7.80968 7.92498 8.03534 8.39552 8.93809 9.51428 10.99054 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.003655 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.895215 B = 7659.712422 C = 8406.968963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.112 3.888 4 N -0.603 5.603 5 C 0.075 3.925 6 C 0.520 3.480 7 O -0.514 6.514 8 C 0.514 3.486 9 O -0.523 6.523 10 N -0.589 5.589 11 C 0.113 3.887 12 C 0.052 3.948 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.043 3.957 24 C 0.112 3.888 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.101 0.899 39 H -0.008 1.008 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 11.546 0.075 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.010 4.010 4 N -0.338 5.338 5 C -0.068 4.068 6 C 0.302 3.698 7 O -0.388 6.388 8 C 0.296 3.704 9 O -0.398 6.398 10 N -0.323 5.323 11 C -0.008 4.008 12 C -0.077 4.077 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.087 4.087 24 C -0.011 4.011 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.119 0.881 39 H 0.010 0.990 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.853 11.877 -0.777 18.264 hybrid contribution 0.702 -0.309 0.855 1.149 sum -13.150 11.567 0.078 17.514 Atomic orbital electron populations 1.21677 0.94788 1.02220 1.01918 1.21913 0.96479 0.96674 1.02983 1.21668 0.77907 0.97639 1.03759 1.47864 1.07201 1.72634 1.06072 1.21919 0.97337 1.02745 0.84829 1.20367 0.88292 0.76767 0.84344 1.90787 1.68658 1.48403 1.30952 1.20126 0.88300 0.84149 0.77845 1.90779 1.63492 1.35720 1.49841 1.48283 1.09004 1.06697 1.68339 1.22126 0.77654 0.99755 1.01304 1.22439 1.01488 0.89192 0.94550 1.62084 1.02125 1.05026 1.56809 1.19736 0.96838 0.86614 0.89861 1.21170 0.95300 1.14522 1.23886 0.91676 1.24986 0.98384 0.96074 0.95072 1.69962 1.36496 1.19955 1.27273 0.86442 0.84619 0.78338 0.78032 1.19577 1.21095 1.20985 1.22381 0.92016 0.97837 0.96428 1.22005 0.93862 0.84331 1.00920 0.92604 0.92439 0.92193 0.91370 0.91452 0.90003 0.89425 0.91628 0.89936 0.90996 0.90194 0.89062 0.95558 0.88066 0.99021 0.94962 0.92896 0.95433 0.89728 0.90695 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.16 6.26 -26.73 -0.17 -1.33 16 3 C 0.11 0.99 5.42 -4.04 -0.02 0.97 16 4 N -0.60 -6.74 2.87 -182.08 -0.52 -7.26 16 5 C 0.07 0.69 10.23 59.84 0.61 1.30 16 6 C 0.52 7.59 5.48 -11.58 -0.06 7.53 16 7 O -0.51 -8.65 16.65 5.50 0.09 -8.56 16 8 C 0.51 8.18 5.70 -11.59 -0.07 8.11 16 9 O -0.52 -9.52 16.57 5.50 0.09 -9.43 16 10 N -0.59 -8.96 3.00 -172.69 -0.52 -9.48 16 11 C 0.11 1.76 6.61 -3.37 -0.02 1.73 16 12 C 0.05 0.93 5.47 -3.47 -0.02 0.91 16 13 N -0.54 -10.49 4.62 -235.46 -1.09 -11.58 16 14 C 0.19 4.71 4.72 -4.97 -0.02 4.68 16 15 C -0.51 -13.52 8.41 -34.44 -0.29 -13.81 16 16 H 0.07 1.70 7.13 -52.49 -0.37 1.33 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.04 0.69 5.62 -3.70 -0.02 0.66 16 24 C 0.11 1.58 6.52 -3.60 -0.02 1.55 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.09 0.87 7.36 -51.93 -0.38 0.49 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 34 H 0.07 0.78 6.99 -51.92 -0.36 0.42 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 1.93 6.67 -51.93 -0.35 1.58 16 39 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 40 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 44 H 0.07 0.96 6.37 -51.93 -0.33 0.63 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.62 365.22 -8.18 -39.79 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.61 Total: -3.06 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 0.17 Total: 13.14 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -1.39 Total: -53.23 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.62 -8.18 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.941 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds