Wall clock time and date at job start Tue Mar 31 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47014 * 239.99488 * 3 2 1 5 5 H 1.48504 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47552 * 119.99461 * 3 2 1 7 7 C 1.37874 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00369 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47403 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99706 * 294.30374 * 10 9 7 12 12 C 1.53246 * 109.33745 * 172.74587 * 11 10 9 13 13 N 1.47080 * 108.52011 * 53.82534 * 12 11 10 14 14 C 1.34777 * 120.87855 * 128.79081 * 13 12 11 15 15 O 1.21283 * 120.00042 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99946 * 0.02694 * 14 13 12 17 17 H 1.09002 * 110.43747 * 29.25381 * 16 14 13 18 18 C 1.54814 * 110.48596 * 151.79720 * 16 14 13 19 19 C 1.54995 * 102.09037 * 139.55538 * 18 16 14 20 20 O 1.44374 * 103.49155 * 322.97569 * 19 18 16 21 21 C 1.43744 * 106.97720 * 40.06254 * 20 19 18 22 22 H 1.08996 * 109.87865 * 92.90507 * 21 20 19 23 23 C 1.52997 * 109.87839 * 214.06205 * 21 20 19 24 24 N 1.46900 * 109.47197 * 294.23048 * 23 21 20 25 25 C 1.47074 * 118.24134 * 308.81984 * 13 12 11 26 26 C 1.46896 * 110.99803 * 170.00130 * 10 9 7 27 27 H 0.97000 * 120.00392 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46928 * 300.00211 * 9 7 2 29 29 H 1.08997 * 109.47105 * 59.99651 * 9 7 2 30 30 H 1.08996 * 109.49466 * 292.70149 * 11 10 9 31 31 H 1.08995 * 109.49880 * 52.78969 * 11 10 9 32 32 H 1.08996 * 109.63017 * 294.11961 * 12 11 10 33 33 H 1.09000 * 109.79034 * 173.63384 * 12 11 10 34 34 H 1.08997 * 110.90801 * 257.75324 * 18 16 14 35 35 H 1.08997 * 110.90688 * 21.35522 * 18 16 14 36 36 H 1.09007 * 110.61575 * 81.47966 * 19 18 16 37 37 H 1.09000 * 110.61821 * 204.47065 * 19 18 16 38 38 H 1.08993 * 109.47190 * 54.23632 * 23 21 20 39 39 H 1.09007 * 109.47057 * 174.23412 * 23 21 20 40 40 H 1.00900 * 111.00067 * 179.97438 * 24 23 21 41 41 H 1.00897 * 111.00322 * 303.95910 * 24 23 21 42 42 H 1.09006 * 109.62859 * 291.47222 * 25 13 12 43 43 H 1.08999 * 109.63221 * 170.89283 * 25 13 12 44 44 H 1.09002 * 109.49594 * 307.20834 * 26 10 9 45 45 H 1.08996 * 109.49534 * 67.29533 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9767 -3.6490 -1.2493 12 6 4.0789 -4.7078 -1.1375 13 7 3.4615 -5.9862 -0.7533 14 6 3.7115 -7.1122 -1.4505 15 8 3.1934 -8.1578 -1.1198 16 6 4.6348 -7.0721 -2.6409 17 1 5.3806 -6.2869 -2.5178 18 6 5.3215 -8.4452 -2.8404 19 6 5.2898 -8.6031 -4.3820 20 8 4.0183 -8.0289 -4.7533 21 6 3.8322 -6.8590 -3.9390 22 1 4.2036 -5.9791 -4.4641 23 6 2.3481 -6.6846 -3.6104 24 7 1.6041 -6.3966 -4.8439 25 6 2.5637 -6.0032 0.4115 26 6 1.5211 -4.8935 0.2386 27 1 -0.4851 -0.8400 -0.0004 28 1 0.6240 -2.5567 0.8903 29 1 0.6247 -2.5571 -0.8896 30 1 2.3148 -3.8993 -2.0784 31 1 3.4272 -2.6722 -1.4250 32 1 4.8002 -4.4066 -0.3778 33 1 4.5831 -4.8185 -2.0976 34 1 6.3473 -8.4242 -2.4726 35 1 4.7523 -9.2388 -2.3563 36 1 6.1094 -8.0504 -4.8413 37 1 5.3317 -9.6559 -4.6610 38 1 1.9655 -7.6007 -3.1607 39 1 2.2256 -5.8577 -2.9108 40 1 0.6204 -6.2775 -4.6533 41 1 1.9822 -5.5878 -5.3139 42 1 3.1393 -5.8265 1.3201 43 1 2.0631 -6.9694 0.4739 44 1 0.9159 -4.8191 1.1422 45 1 0.8795 -5.1263 -0.6112 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602605594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:42 Heat of formation + Delta-G solvation = -92.508983 kcal Electronic energy + Delta-G solvation = -25843.529115 eV Core-core repulsion = 22280.886885 eV Total energy + Delta-G solvation = -3562.642230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.07809 -40.09015 -38.86533 -36.27187 -35.60503 -34.60683 -33.50844 -32.14633 -30.51506 -29.69692 -27.15224 -25.90261 -24.82202 -24.38929 -23.26762 -22.98800 -21.52273 -19.75912 -18.98308 -18.54002 -17.84943 -17.28091 -17.07447 -16.52615 -16.29266 -16.10444 -15.93155 -15.83898 -15.66770 -15.41594 -15.15011 -14.81067 -14.46506 -14.10751 -13.92356 -13.48311 -13.36505 -13.26296 -13.16314 -12.89289 -12.53656 -12.40819 -12.38499 -12.23358 -12.18347 -12.12469 -11.91185 -11.81462 -11.01078 -10.84464 -10.61636 -10.58184 -9.92941 -9.73468 -9.19407 -8.68160 -6.40057 1.39471 1.56047 1.63875 1.79492 1.82713 2.56634 2.77545 3.01414 3.15539 3.18422 3.31750 3.49148 3.79563 3.85208 3.88741 3.98182 4.06294 4.08255 4.12472 4.17937 4.25723 4.26931 4.42546 4.43943 4.47768 4.60937 4.69929 4.74562 4.80095 4.84090 4.84939 4.85875 4.96212 5.03144 5.11680 5.32519 5.70780 5.84218 5.90959 6.05331 6.24776 6.29525 6.38176 6.39808 6.56680 6.98749 7.41364 8.70624 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.003882 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.657425 B = 7211.194698 C = 7497.371626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.037 4.037 3 Si 1.120 2.880 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.596 4.596 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.530 5.530 11 C 0.052 3.948 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.527 3.473 15 O -0.575 6.575 16 C -0.143 4.143 17 H 0.140 0.860 18 C -0.138 4.138 19 C 0.042 3.958 20 O -0.379 6.379 21 C 0.101 3.899 22 H 0.097 0.903 23 C 0.056 3.944 24 N -0.844 5.844 25 C 0.127 3.873 26 C 0.044 3.956 27 H 0.252 0.748 28 H -0.002 1.002 29 H -0.047 1.047 30 H 0.014 0.986 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.345 0.655 41 H 0.348 0.652 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.044 -13.083 -7.222 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.234 4.234 3 Si 0.941 3.059 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.634 4.634 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.255 5.255 11 C -0.077 4.077 12 C -0.006 4.006 13 N -0.341 5.341 14 C 0.317 3.683 15 O -0.455 6.455 16 C -0.165 4.165 17 H 0.157 0.843 18 C -0.176 4.176 19 C -0.034 4.034 20 O -0.298 6.298 21 C 0.042 3.958 22 H 0.115 0.885 23 C -0.075 4.075 24 N -0.374 5.374 25 C 0.004 3.996 26 C -0.086 4.086 27 H 0.061 0.939 28 H 0.016 0.984 29 H -0.029 1.029 30 H 0.032 0.968 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 14.009 -12.737 -7.052 20.204 hybrid contribution -1.542 -0.755 0.321 1.746 sum 12.467 -13.491 -6.732 19.564 Atomic orbital electron populations 1.70938 1.08177 1.29598 1.49053 1.27406 0.96403 1.06791 0.92798 0.82888 0.74018 0.70780 0.78181 1.18920 1.21513 1.19459 1.22248 0.95124 0.91658 1.54330 0.91821 1.19526 0.90743 0.90349 0.92529 1.61922 1.26512 1.02058 1.34996 1.22378 0.95601 1.00225 0.89485 1.22094 0.94769 0.80648 1.03097 1.48308 1.46772 1.09032 1.29979 1.20659 0.81581 0.82545 0.83556 1.90663 1.53398 1.31441 1.70017 1.22966 0.98162 1.03017 0.92370 0.84276 1.23168 1.02373 0.94348 0.97680 1.23811 0.86215 1.00526 0.92847 1.89005 1.38946 1.41536 1.60356 1.22622 0.93717 0.90526 0.88940 0.88488 1.22070 0.94041 0.99700 0.91683 1.58613 1.07335 1.46893 1.24562 1.21590 0.91361 0.98056 0.88594 1.22444 0.95700 0.90152 1.00259 0.93889 0.98391 1.02921 0.96771 0.89453 0.89091 0.86468 0.86858 0.91188 0.89391 0.87838 0.92762 0.94673 0.84236 0.83858 0.89745 0.89383 0.90254 0.96891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 13.65 21.45 0.29 -56.46 16 2 C -0.04 -2.03 5.46 84.65 0.46 -1.57 16 3 Si 1.12 47.75 29.90 68.60 2.05 49.80 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.60 -31.94 8.41 25.60 0.22 -31.72 16 8 H 0.06 3.29 7.13 -2.91 -0.02 3.26 16 9 C 0.20 9.84 4.04 85.56 0.35 10.18 16 10 N -0.53 -21.06 4.62 -899.84 -4.16 -25.21 16 11 C 0.05 1.71 5.44 86.39 0.47 2.19 16 12 C 0.12 2.70 6.09 86.35 0.53 3.23 16 13 N -0.61 -15.90 2.49 -817.92 -2.03 -17.93 16 14 C 0.53 13.88 4.65 87.66 0.41 14.29 16 15 O -0.58 -19.36 14.52 -3.04 -0.04 -19.40 16 16 C -0.14 -2.71 2.56 -10.55 -0.03 -2.74 16 17 H 0.14 1.71 6.28 -2.39 -0.01 1.70 16 18 C -0.14 -2.33 6.65 31.90 0.21 -2.12 16 19 C 0.04 0.66 7.72 72.66 0.56 1.22 16 20 O -0.38 -9.17 11.15 -148.98 -1.66 -10.83 16 21 C 0.10 2.15 3.61 30.97 0.11 2.27 16 22 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 23 C 0.06 1.48 5.29 86.30 0.46 1.94 16 24 N -0.84 -20.50 9.59 -186.72 -1.79 -22.29 16 25 C 0.13 3.67 6.60 86.35 0.57 4.24 16 26 C 0.04 1.51 5.62 86.38 0.49 1.99 16 27 H 0.25 15.50 7.22 -92.71 -0.67 14.83 16 28 H 0.00 -0.11 7.84 -2.39 -0.02 -0.12 16 29 H -0.05 -2.57 7.99 -2.39 -0.02 -2.59 16 30 H 0.01 0.49 7.13 -2.39 -0.02 0.47 16 31 H 0.09 3.12 6.67 -2.39 -0.02 3.10 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.12 1.89 5.62 -2.39 -0.01 1.87 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.60 6.90 -2.39 -0.02 1.58 16 36 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.77 7.16 -2.39 -0.02 1.75 16 39 H 0.04 0.99 5.70 -2.38 -0.01 0.97 16 40 H 0.35 8.00 9.08 -89.69 -0.81 7.19 16 41 H 0.35 7.22 8.99 -89.70 -0.81 6.41 16 42 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.09 2.60 7.06 -2.39 -0.02 2.58 16 44 H 0.08 2.74 7.99 -2.39 -0.02 2.72 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -71.55 345.13 -3.06 -74.61 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.51 Total: 24.31 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.80 Total: 3.41 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -7.69 Total: -121.89 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.71 Total: -30.23 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.05 Total: 49.80 kcal Total: -71.55 -3.06 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602605594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.901 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds