Wall clock time and date at job start Tue Mar 31 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48493 * 109.47347 * 272.90780 * 3 2 1 5 5 H 1.48502 * 109.46960 * 32.91503 * 3 2 1 6 6 H 1.48503 * 109.46931 * 152.90911 * 3 2 1 7 7 C 1.38813 * 119.99475 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00166 * 339.36107 * 7 2 1 9 9 N 1.36935 * 119.99755 * 159.36563 * 7 2 1 10 10 C 1.46927 * 120.63048 * 332.62432 * 9 7 2 11 11 C 1.53194 * 108.77396 * 233.58505 * 10 9 7 12 12 C 1.53041 * 109.31485 * 305.36772 * 11 10 9 13 13 N 1.46504 * 109.45655 * 181.38608 * 12 11 10 14 14 C 1.34776 * 119.99472 * 154.99856 * 13 12 11 15 15 O 1.21586 * 120.00464 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99775 * 179.97438 * 14 13 12 17 17 C 1.47467 * 125.62629 * 0.02562 * 16 14 13 18 18 C 1.54910 * 104.81168 * 204.06637 * 17 16 14 19 19 C 1.55159 * 101.61485 * 323.04804 * 18 17 16 20 20 C 1.47019 * 125.64798 * 180.02562 * 16 14 13 21 21 H 1.08993 * 110.01500 * 59.48593 * 20 16 14 22 22 C 1.53010 * 109.88231 * 298.39061 * 20 16 14 23 23 O 1.42902 * 109.46677 * 67.19100 * 22 20 16 24 24 C 1.53036 * 109.53828 * 61.36258 * 12 11 10 25 25 C 1.46925 * 120.63042 * 152.59965 * 9 7 2 26 26 H 0.97006 * 119.99736 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58566 * 113.80270 * 10 9 7 28 28 H 1.08996 * 109.58717 * 353.37274 * 10 9 7 29 29 H 1.09000 * 109.49998 * 185.40856 * 11 10 9 30 30 H 1.09006 * 109.49531 * 65.31949 * 11 10 9 31 31 H 1.08999 * 109.45997 * 301.35510 * 12 11 10 32 32 H 0.96993 * 120.00255 * 334.98976 * 13 12 11 33 33 H 1.09001 * 110.34660 * 85.25311 * 17 16 14 34 34 H 1.08992 * 110.40588 * 322.91680 * 17 16 14 35 35 H 1.08996 * 111.00781 * 204.95064 * 18 17 16 36 36 H 1.09003 * 111.00386 * 81.13474 * 18 17 16 37 37 H 1.09007 * 110.71707 * 153.84347 * 19 18 17 38 38 H 1.08999 * 110.71873 * 276.93720 * 19 18 17 39 39 H 1.08993 * 109.46793 * 187.19182 * 22 20 16 40 40 H 1.09001 * 109.46872 * 307.19661 * 22 20 16 41 41 H 0.96700 * 113.99912 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.49757 * 58.59080 * 24 12 11 43 43 H 1.09004 * 109.49771 * 178.68290 * 24 12 11 44 44 H 1.09002 * 109.58981 * 246.19512 * 25 9 7 45 45 H 1.09001 * 109.58952 * 6.62858 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0819 -1.3982 5 1 1.4799 2.6340 0.7608 6 1 3.5772 1.4230 0.6376 7 6 2.0101 -1.2022 -0.0005 8 1 1.5221 -2.1076 0.3287 9 7 3.3136 -1.2401 -0.4185 10 6 3.8176 -0.2583 -1.3884 11 6 4.4629 -1.0075 -2.5584 12 6 5.5294 -1.9642 -2.0204 13 7 6.1716 -2.6583 -3.1395 14 6 7.4219 -3.1426 -3.0036 15 8 8.0172 -3.0032 -1.9527 16 7 8.0125 -3.7816 -4.0329 17 6 7.4083 -4.0191 -5.3570 18 6 8.1573 -5.2534 -5.9185 19 6 9.5993 -5.0053 -5.4022 20 6 9.3654 -4.3571 -4.0214 21 1 9.4428 -5.1124 -3.2394 22 6 10.3982 -3.2537 -3.7829 23 8 10.2481 -2.7391 -2.4582 24 6 4.8754 -2.9899 -1.0919 25 6 4.2349 -2.2631 0.0948 26 1 -0.4850 0.8401 0.0004 27 1 4.5599 0.3804 -0.9096 28 1 2.9911 0.3502 -1.7554 29 1 4.9255 -0.2918 -3.2380 30 1 3.7003 -1.5754 -3.0916 31 1 6.2783 -1.3985 -1.4662 32 1 5.6968 -2.7693 -3.9780 33 1 7.5620 -3.1555 -6.0041 34 1 6.3446 -4.2343 -5.2563 35 1 8.1290 -5.2654 -7.0080 36 1 7.7494 -6.1776 -5.5090 37 1 10.1395 -5.9466 -5.2998 38 1 10.1345 -4.3252 -6.0648 39 1 11.4013 -3.6631 -3.9021 40 1 10.2452 -2.4508 -4.5041 41 1 10.8723 -2.0345 -2.2369 42 1 4.1091 -3.5391 -1.6388 43 1 5.6317 -3.6851 -0.7276 44 1 5.0112 -1.7879 0.6945 45 1 3.6837 -2.9774 0.7065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609828787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:29 Heat of formation + Delta-G solvation = -44.176843 kcal Electronic energy + Delta-G solvation = -25387.017042 eV Core-core repulsion = 21826.470651 eV Total energy + Delta-G solvation = -3560.546391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.36920 -38.48336 -37.08446 -36.21659 -34.32410 -32.38398 -31.46227 -30.49133 -30.31549 -29.52498 -25.47909 -24.87294 -23.05920 -22.62527 -21.86594 -21.14655 -19.65656 -19.31016 -18.04020 -17.12280 -16.86255 -16.65866 -15.81513 -15.18177 -14.69450 -14.47788 -14.31387 -14.11587 -14.00775 -13.72303 -13.35067 -13.30185 -12.87211 -12.75050 -12.36758 -12.31734 -11.94129 -11.86641 -11.70224 -11.64909 -11.46069 -11.10010 -10.86705 -10.75001 -10.45926 -10.19501 -10.06288 -9.97718 -9.75411 -9.61733 -9.40890 -8.71579 -8.58791 -8.42417 -6.93724 -5.91339 -3.26462 2.68437 3.34574 3.51913 3.53121 3.56481 3.93230 4.08328 4.25493 4.45290 4.56757 4.68920 4.88228 5.02225 5.07414 5.12355 5.16775 5.24302 5.27551 5.31990 5.40591 5.41884 5.50727 5.51571 5.70006 5.78595 5.87998 5.91817 6.12426 6.16268 6.23332 6.29470 6.46856 6.53255 6.64930 6.73147 6.73502 6.95995 6.99713 7.22788 7.71306 8.00762 8.22229 8.37031 8.95395 8.98522 9.76177 10.14679 11.24808 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.003522 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.481359 B = 7949.186349 C = 8236.286631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.257 4.257 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.130 3.870 11 C -0.139 4.139 12 C 0.172 3.828 13 N -0.743 5.743 14 C 0.713 3.287 15 O -0.548 6.548 16 N -0.637 5.637 17 C 0.097 3.903 18 C -0.130 4.130 19 C -0.126 4.126 20 C 0.158 3.842 21 H 0.078 0.922 22 C 0.065 3.935 23 O -0.530 6.530 24 C -0.141 4.141 25 C 0.151 3.849 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.388 0.612 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.363 0.637 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.427 -8.947 -15.156 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.386 4.386 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.004 3.996 11 C -0.179 4.179 12 C 0.067 3.933 13 N -0.397 5.397 14 C 0.415 3.585 15 O -0.421 6.421 16 N -0.378 5.378 17 C -0.026 4.026 18 C -0.168 4.168 19 C -0.164 4.164 20 C 0.053 3.947 21 H 0.096 0.904 22 C -0.015 4.015 23 O -0.333 6.333 24 C -0.181 4.181 25 C 0.025 3.975 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.221 0.779 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.208 0.792 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.178 -9.147 -14.195 26.313 hybrid contribution 0.616 1.344 -0.678 1.627 sum 20.795 -7.803 -14.874 26.731 Atomic orbital electron populations 1.69842 1.05726 1.26485 1.53275 1.25283 0.95236 0.97552 0.99615 0.86965 0.80161 0.84672 0.76989 1.21668 1.23171 1.19445 1.18946 0.84953 0.94773 1.39880 0.89658 1.44414 1.08696 1.33355 1.46589 1.21296 0.97194 0.92022 0.89090 1.22343 0.97507 0.98409 0.99681 1.20786 0.93766 0.92536 0.86172 1.45498 1.14679 1.62184 1.17388 1.15536 0.81327 0.78660 0.83021 1.91006 1.63514 1.61778 1.25848 1.47671 1.16130 1.61417 1.12547 1.22252 0.98064 0.97525 0.84783 1.22745 0.94833 0.98192 1.01067 1.22619 0.97648 1.01227 0.94870 1.21337 0.81445 0.94353 0.97577 0.90362 1.22541 0.97001 0.95895 0.86031 1.87042 1.60455 1.56632 1.29142 1.22388 0.99270 0.98148 0.98301 1.20905 0.92251 0.91259 0.93130 0.92827 0.95490 0.90605 0.92431 0.91338 0.90056 0.77901 0.91828 0.90863 0.89747 0.90358 0.89704 0.90392 0.93644 0.94235 0.79166 0.92144 0.92248 0.95667 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.16 13.97 55.49 0.78 -27.38 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 22.69 24.34 -169.99 -4.14 18.55 16 4 H -0.29 -7.11 6.62 56.52 0.37 -6.73 16 5 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 6 H -0.27 -6.88 6.64 56.52 0.38 -6.51 16 7 C -0.26 -7.31 10.04 -15.06 -0.15 -7.46 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 N -0.61 -14.81 2.77 -172.32 -0.48 -15.29 16 10 C 0.13 2.89 4.20 -3.71 -0.02 2.88 16 11 C -0.14 -2.49 5.55 -26.61 -0.15 -2.64 16 12 C 0.17 3.00 2.42 -67.89 -0.16 2.84 16 13 N -0.74 -11.04 5.04 -58.63 -0.30 -11.33 16 14 C 0.71 11.41 8.20 -86.91 -0.71 10.70 16 15 O -0.55 -10.90 13.30 -18.77 -0.25 -11.15 16 16 N -0.64 -7.66 3.07 -168.66 -0.52 -8.17 16 17 C 0.10 0.79 6.58 -2.51 -0.02 0.78 16 18 C -0.13 -0.76 7.08 -24.58 -0.17 -0.93 16 19 C -0.13 -0.76 6.47 -24.90 -0.16 -0.92 16 20 C 0.16 1.61 3.29 -66.95 -0.22 1.39 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 C 0.06 0.65 6.46 37.16 0.24 0.89 16 23 O -0.53 -7.21 10.37 -59.29 -0.61 -7.83 16 24 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 25 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.03 0.60 7.07 -51.93 -0.37 0.24 16 28 H 0.08 1.82 4.49 -51.93 -0.23 1.58 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 32 H 0.39 4.79 7.08 -40.82 -0.29 4.50 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 7.30 -51.93 -0.38 0.19 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 38 H 0.08 0.39 7.86 -51.93 -0.41 -0.02 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.36 3.44 9.12 45.56 0.42 3.86 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.36 7.93 -51.93 -0.41 0.94 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -35.68 343.40 -8.88 -44.57 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.75 Total: 4.38 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.79 Total: 8.49 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.51 Total: -62.18 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.86 Total: -18.97 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.68 -8.88 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609828787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.389 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds