Wall clock time and date at job start Tue Mar 31 2020 03:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 C 1.53004 * 109.46928 * 119.99495 * 2 1 3 5 5 N 1.46901 * 109.46767 * 65.81890 * 4 2 1 6 6 C 1.46898 * 110.99910 * 203.76393 * 5 4 2 7 7 C 1.50699 * 109.47287 * 71.64990 * 6 5 4 8 8 H 1.08003 * 119.99349 * 5.02275 * 7 6 5 9 9 C 1.37871 * 120.00269 * 185.02694 * 7 6 5 10 10 N 1.31523 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00252 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46932 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47320 * 119.99871 * 11 9 7 14 14 H 1.48501 * 109.47239 * 240.00331 * 11 9 7 15 15 C 1.46908 * 111.00025 * 79.81249 * 5 4 2 16 16 C 1.50699 * 109.46996 * 277.72375 * 15 5 4 17 17 O 1.21287 * 119.99944 * 352.88879 * 16 15 5 18 18 N 1.34775 * 120.00149 * 172.88509 * 16 15 5 19 19 C 1.47265 * 121.35512 * 179.97438 * 18 16 15 20 20 C 1.52986 * 108.18639 * 118.52102 * 19 18 16 21 21 N 1.45640 * 110.77936 * 46.70937 * 20 19 18 22 22 C 1.33385 * 124.59355 * 338.14280 * 21 20 19 23 23 O 1.21279 * 118.48912 * 184.29341 * 22 21 20 24 24 C 1.47046 * 121.35189 * 0.02709 * 18 16 15 25 25 H 1.09004 * 109.46632 * 66.71763 * 1 2 3 26 26 H 1.09003 * 109.47085 * 186.71599 * 1 2 3 27 27 H 1.08997 * 109.46820 * 306.71937 * 1 2 3 28 28 H 1.09002 * 109.47449 * 239.99451 * 2 1 3 29 29 H 1.08996 * 109.47067 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46983 * 299.99463 * 3 2 1 31 31 H 1.08993 * 109.47173 * 59.99567 * 3 2 1 32 32 H 1.08994 * 109.47274 * 305.81901 * 4 2 1 33 33 H 1.08994 * 109.46955 * 185.81358 * 4 2 1 34 34 H 1.09000 * 109.47569 * 191.64705 * 6 5 4 35 35 H 1.09000 * 109.47346 * 311.65111 * 6 5 4 36 36 H 0.96993 * 119.99746 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47064 * 157.72975 * 15 5 4 38 38 H 1.08991 * 109.46786 * 37.72086 * 15 5 4 39 39 H 1.08997 * 109.72107 * 238.19282 * 19 18 16 40 40 H 1.09001 * 109.72324 * 358.85130 * 19 18 16 41 41 H 1.08999 * 109.21703 * 167.05866 * 20 19 18 42 42 H 1.09000 * 109.21630 * 286.39423 * 20 19 18 43 43 H 0.97004 * 117.70578 * 158.11921 * 21 20 19 44 44 H 1.09000 * 109.56845 * 342.53620 * 24 18 16 45 45 H 1.09004 * 109.57194 * 102.76996 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6683 -2.1407 1.1812 6 6 1.6157 -2.7361 2.5231 7 6 0.4106 -2.2100 3.2593 8 1 -0.2942 -1.5679 2.7519 9 6 0.2078 -2.5483 4.5804 10 7 1.0664 -3.3298 5.1983 11 14 -1.2856 -1.8957 5.4931 12 1 -2.0902 -1.0440 4.5806 13 1 -2.1138 -3.0342 5.9654 14 1 -0.8405 -1.0903 6.6586 15 6 2.5886 -2.8848 0.3109 16 6 2.1730 -2.7088 -1.1269 17 8 1.1353 -2.1399 -1.3929 18 7 2.9544 -3.1833 -2.1172 19 6 2.5769 -3.0283 -3.5322 20 6 3.6556 -2.1940 -4.2256 21 7 4.9850 -2.6764 -3.8777 22 6 5.2694 -3.3953 -2.7907 23 8 6.4288 -3.6725 -2.5675 24 6 4.2179 -3.8779 -1.8287 25 1 -0.3633 0.4062 -0.9440 26 1 -0.3633 -1.0206 0.1202 27 1 -0.3633 0.6144 0.8237 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.5941 -0.2710 2.1362 33 1 3.1250 -0.6319 1.3029 34 1 1.5441 -3.8204 2.4371 35 1 2.5200 -2.4742 3.0725 36 1 0.9235 -3.5681 6.1276 37 1 2.5588 -3.9429 0.5707 38 1 3.6017 -2.5059 0.4452 39 1 2.5098 -4.0084 -4.0045 40 1 1.6159 -2.5188 -3.6029 41 1 3.5211 -2.2596 -5.3053 42 1 3.5592 -1.1536 -3.9152 43 1 5.7149 -2.4601 -4.4789 44 1 4.5296 -3.6594 -0.8073 45 1 4.0788 -4.9527 -1.9458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755670603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:08 Heat of formation + Delta-G solvation = -52.720864 kcal Electronic energy + Delta-G solvation = -25633.045348 eV Core-core repulsion = 22072.128460 eV Total energy + Delta-G solvation = -3560.916888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81692 -39.32358 -37.18145 -36.13488 -34.48719 -33.87213 -32.41351 -30.52167 -28.45707 -27.24162 -26.50575 -26.35021 -24.50750 -23.45065 -21.06296 -20.44076 -19.45395 -18.88084 -17.66503 -17.20507 -16.49210 -16.36468 -15.95889 -15.70046 -15.28825 -14.62369 -14.38537 -14.25611 -13.98841 -13.73574 -13.42895 -13.18838 -12.89870 -12.53641 -12.36051 -12.27692 -12.20793 -11.87213 -11.61981 -11.51249 -11.23962 -10.98601 -10.85810 -10.63457 -10.57773 -10.21391 -10.05757 -9.77782 -9.67267 -9.54965 -9.42439 -9.15424 -8.68707 -8.43339 -7.27179 -6.02244 -4.02681 2.27541 2.61354 2.81150 3.04313 3.32501 3.40253 3.46346 4.16299 4.35912 4.44480 4.63248 4.79046 4.85362 4.94354 5.05429 5.13592 5.33310 5.48114 5.48541 5.52090 5.57139 5.68565 5.73019 5.86929 6.03903 6.10109 6.24577 6.35770 6.42665 6.44979 6.58647 6.68307 6.79719 6.93037 7.05157 7.17929 7.24620 7.30617 7.39390 7.82567 7.84956 8.04172 8.15734 8.37307 8.52951 9.07200 9.61820 11.08399 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.004194 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.760750 B = 6674.838064 C = 7364.652514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.068 3.932 5 N -0.514 5.514 6 C 0.194 3.806 7 C -0.501 4.501 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.035 3.965 16 C 0.518 3.482 17 O -0.489 6.489 18 N -0.631 5.631 19 C 0.097 3.903 20 C 0.096 3.904 21 N -0.717 5.717 22 C 0.514 3.486 23 O -0.549 6.549 24 C 0.098 3.902 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.015 0.985 34 H 0.027 0.973 35 H -0.003 1.003 36 H 0.260 0.740 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.399 0.601 44 H 0.122 0.878 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 1.862 -18.877 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.060 4.060 5 N -0.238 5.238 6 C 0.069 3.931 7 C -0.539 4.539 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.097 4.097 16 C 0.307 3.693 17 O -0.360 6.360 18 N -0.371 5.371 19 C -0.026 4.026 20 C -0.029 4.029 21 N -0.369 5.369 22 C 0.300 3.700 23 O -0.426 6.426 24 C -0.029 4.029 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.140 0.860 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.141 1.879 -18.706 19.490 hybrid contribution 0.426 0.371 0.631 0.847 sum 5.567 2.250 -18.075 19.046 Atomic orbital electron populations 1.21511 0.94589 1.03133 0.98269 1.21358 0.97376 0.93658 0.99000 1.21876 0.99815 0.97787 1.00992 1.22171 0.95972 0.89014 0.98821 1.61675 1.46618 1.01343 1.14183 1.19825 0.96835 0.94666 0.81734 1.21195 1.07827 1.29805 0.95096 0.91449 1.24976 0.96719 0.95400 0.97526 1.69964 1.36099 1.36448 1.11546 0.86465 0.82826 0.78717 0.79598 1.19548 1.21092 1.21190 1.22082 0.95596 1.01482 0.90530 1.21118 0.83593 0.77264 0.87358 1.90685 1.22914 1.38822 1.83625 1.48362 1.22479 1.59944 1.06295 1.21851 0.99139 1.00675 0.80960 1.21796 0.81876 0.98896 1.00367 1.45372 1.11408 1.54865 1.25287 1.20386 0.90059 0.77668 0.81909 1.90808 1.20348 1.57382 1.74110 1.21876 0.81928 0.98744 1.00320 0.95242 0.90242 0.94667 0.90542 0.93919 0.93537 0.93047 0.89748 0.96662 0.95535 0.98501 0.93032 0.88348 0.92897 0.90617 0.86853 0.89392 0.91071 0.76569 0.86019 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 8.29 37.16 0.31 -1.86 16 2 C -0.10 -1.64 2.38 -90.61 -0.22 -1.86 16 3 C -0.15 -2.17 9.19 37.16 0.34 -1.83 16 4 C 0.07 1.33 4.23 -3.82 -0.02 1.32 16 5 N -0.51 -10.66 3.36 -237.52 -0.80 -11.46 16 6 C 0.19 4.83 4.69 -4.98 -0.02 4.81 16 7 C -0.50 -13.77 8.27 -34.44 -0.28 -14.05 16 8 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 11 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.04 0.58 4.22 -4.97 -0.02 0.56 16 16 C 0.52 7.72 6.53 -10.99 -0.07 7.65 16 17 O -0.49 -8.56 11.31 5.55 0.06 -8.50 16 18 N -0.63 -6.96 2.98 -174.14 -0.52 -7.48 16 19 C 0.10 0.80 6.53 -3.63 -0.02 0.77 16 20 C 0.10 0.61 7.34 -4.51 -0.03 0.58 16 21 N -0.72 -5.82 5.42 -61.32 -0.33 -6.16 16 22 C 0.51 5.63 7.84 -11.72 -0.09 5.53 16 23 O -0.55 -8.05 17.80 5.56 0.10 -7.96 16 24 C 0.10 0.97 6.41 -5.01 -0.03 0.94 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.69 6.86 -51.93 -0.36 1.33 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.34 4.53 -51.93 -0.24 1.10 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.85 7.07 -51.93 -0.37 1.48 16 33 H 0.02 0.28 7.57 -51.93 -0.39 -0.11 16 34 H 0.03 0.69 7.64 -51.93 -0.40 0.30 16 35 H 0.00 -0.08 8.06 -51.93 -0.42 -0.49 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.10 1.55 7.53 -51.93 -0.39 1.16 16 38 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 1.04 7.06 -51.93 -0.37 0.67 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.40 2.74 8.80 -40.82 -0.36 2.38 16 44 H 0.12 1.24 6.07 -51.93 -0.32 0.92 16 45 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -33.10 353.54 -7.99 -41.09 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.29 Total: 0.10 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.26 Total: 3.99 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.91 Total: -50.65 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.16 Total: -16.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.10 -7.99 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.630 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds