Wall clock time and date at job start Tue Mar 31 2020 03:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 C 1.53004 * 109.46928 * 119.99495 * 2 1 3 5 5 N 1.46901 * 109.46767 * 65.81890 * 4 2 1 6 6 C 1.46898 * 110.99910 * 203.76393 * 5 4 2 7 7 C 1.50699 * 109.47287 * 71.64990 * 6 5 4 8 8 H 1.08003 * 119.99349 * 5.02275 * 7 6 5 9 9 C 1.37871 * 120.00269 * 185.02694 * 7 6 5 10 10 N 1.31523 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00252 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46932 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47320 * 119.99871 * 11 9 7 14 14 H 1.48501 * 109.47239 * 240.00331 * 11 9 7 15 15 C 1.46908 * 111.00025 * 79.81249 * 5 4 2 16 16 C 1.50699 * 109.46996 * 277.72375 * 15 5 4 17 17 O 1.21287 * 119.99944 * 352.88879 * 16 15 5 18 18 N 1.34775 * 120.00149 * 172.88509 * 16 15 5 19 19 C 1.47265 * 121.35512 * 179.97438 * 18 16 15 20 20 C 1.52986 * 108.18639 * 118.52102 * 19 18 16 21 21 N 1.45640 * 110.77936 * 46.70937 * 20 19 18 22 22 C 1.33385 * 124.59355 * 338.14280 * 21 20 19 23 23 O 1.21279 * 118.48912 * 184.29341 * 22 21 20 24 24 C 1.47046 * 121.35189 * 0.02709 * 18 16 15 25 25 H 1.09004 * 109.46632 * 66.71763 * 1 2 3 26 26 H 1.09003 * 109.47085 * 186.71599 * 1 2 3 27 27 H 1.08997 * 109.46820 * 306.71937 * 1 2 3 28 28 H 1.09002 * 109.47449 * 239.99451 * 2 1 3 29 29 H 1.08996 * 109.47067 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46983 * 299.99463 * 3 2 1 31 31 H 1.08993 * 109.47173 * 59.99567 * 3 2 1 32 32 H 1.08994 * 109.47274 * 305.81901 * 4 2 1 33 33 H 1.08994 * 109.46955 * 185.81358 * 4 2 1 34 34 H 1.09000 * 109.47569 * 191.64705 * 6 5 4 35 35 H 1.09000 * 109.47346 * 311.65111 * 6 5 4 36 36 H 0.96993 * 119.99746 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47064 * 157.72975 * 15 5 4 38 38 H 1.08991 * 109.46786 * 37.72086 * 15 5 4 39 39 H 1.08997 * 109.72107 * 238.19282 * 19 18 16 40 40 H 1.09001 * 109.72324 * 358.85130 * 19 18 16 41 41 H 1.08999 * 109.21703 * 167.05866 * 20 19 18 42 42 H 1.09000 * 109.21630 * 286.39423 * 20 19 18 43 43 H 0.97004 * 117.70578 * 158.11921 * 21 20 19 44 44 H 1.09000 * 109.56845 * 342.53620 * 24 18 16 45 45 H 1.09004 * 109.57194 * 102.76996 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6683 -2.1407 1.1812 6 6 1.6157 -2.7361 2.5231 7 6 0.4106 -2.2100 3.2593 8 1 -0.2942 -1.5679 2.7519 9 6 0.2078 -2.5483 4.5804 10 7 1.0664 -3.3298 5.1983 11 14 -1.2856 -1.8957 5.4931 12 1 -2.0902 -1.0440 4.5806 13 1 -2.1138 -3.0342 5.9654 14 1 -0.8405 -1.0903 6.6586 15 6 2.5886 -2.8848 0.3109 16 6 2.1730 -2.7088 -1.1269 17 8 1.1353 -2.1399 -1.3929 18 7 2.9544 -3.1833 -2.1172 19 6 2.5769 -3.0283 -3.5322 20 6 3.6556 -2.1940 -4.2256 21 7 4.9850 -2.6764 -3.8777 22 6 5.2694 -3.3953 -2.7907 23 8 6.4288 -3.6725 -2.5675 24 6 4.2179 -3.8779 -1.8287 25 1 -0.3633 0.4062 -0.9440 26 1 -0.3633 -1.0206 0.1202 27 1 -0.3633 0.6144 0.8237 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.5941 -0.2710 2.1362 33 1 3.1250 -0.6319 1.3029 34 1 1.5441 -3.8204 2.4371 35 1 2.5200 -2.4742 3.0725 36 1 0.9235 -3.5681 6.1276 37 1 2.5588 -3.9429 0.5707 38 1 3.6017 -2.5059 0.4452 39 1 2.5098 -4.0084 -4.0045 40 1 1.6159 -2.5188 -3.6029 41 1 3.5211 -2.2596 -5.3053 42 1 3.5592 -1.1536 -3.9152 43 1 5.7149 -2.4601 -4.4789 44 1 4.5296 -3.6594 -0.8073 45 1 4.0788 -4.9527 -1.9458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755670603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:07 Heat of formation + Delta-G solvation = -76.832263 kcal Electronic energy + Delta-G solvation = -25634.090896 eV Core-core repulsion = 22072.128460 eV Total energy + Delta-G solvation = -3561.962437 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75525 -40.45422 -38.50802 -37.22320 -35.67802 -35.18762 -34.36215 -31.37157 -29.95572 -28.58258 -27.78941 -27.71581 -26.01081 -24.57854 -22.69375 -21.52386 -20.74880 -19.86105 -18.82395 -18.32117 -17.93703 -17.47761 -17.32422 -16.66009 -16.46026 -16.29140 -15.57597 -15.47025 -15.31916 -14.98552 -14.71859 -14.32725 -14.20923 -13.92778 -13.79160 -13.42045 -13.39911 -13.06725 -12.93991 -12.80399 -12.73436 -12.61271 -12.45653 -12.44446 -12.01101 -11.69531 -11.56324 -11.41392 -11.30286 -11.00481 -10.63795 -10.58065 -10.18105 -9.65207 -8.95134 -8.17290 -6.25320 1.40539 1.42014 1.42958 1.55204 1.64929 1.71509 2.27081 2.42545 3.15224 3.22344 3.42081 3.59549 3.83775 4.03117 4.08470 4.22220 4.23433 4.35041 4.37188 4.41554 4.49048 4.53265 4.65907 4.79555 4.90634 4.92894 4.93599 4.97928 5.15307 5.17664 5.22424 5.28056 5.32092 5.40757 5.66207 5.72269 5.77138 5.82846 6.07026 6.18176 6.18663 6.36206 6.61967 6.91072 7.06513 7.25274 7.43801 8.92967 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.004194 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.760750 B = 6674.838064 C = 7364.652514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.072 3.928 5 N -0.524 5.524 6 C 0.210 3.790 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.006 3.994 10 N -0.933 5.933 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.030 3.970 16 C 0.524 3.476 17 O -0.518 6.518 18 N -0.621 5.621 19 C 0.092 3.908 20 C 0.100 3.900 21 N -0.706 5.706 22 C 0.514 3.486 23 O -0.592 6.592 24 C 0.096 3.904 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.023 0.977 34 H 0.009 0.991 35 H -0.028 1.028 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.068 0.932 43 H 0.408 0.592 44 H 0.117 0.883 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 2.599 -21.001 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.199 4.199 4 C -0.056 4.056 5 N -0.248 5.248 6 C 0.084 3.916 7 C -0.551 4.551 8 H 0.076 0.924 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.205 1.205 15 C -0.102 4.102 16 C 0.313 3.687 17 O -0.393 6.393 18 N -0.359 5.359 19 C -0.030 4.030 20 C -0.024 4.024 21 N -0.357 5.357 22 C 0.301 3.699 23 O -0.473 6.473 24 C -0.029 4.029 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.027 0.973 35 H -0.011 1.011 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.146 0.854 42 H 0.086 0.914 43 H 0.244 0.756 44 H 0.135 0.865 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.052 2.627 -20.901 21.662 hybrid contribution 0.495 0.108 1.194 1.297 sum 5.548 2.735 -19.707 20.655 Atomic orbital electron populations 1.21394 0.95478 1.00981 0.98797 1.21289 0.96490 0.95148 0.97654 1.21816 1.00531 0.95784 1.01760 1.22142 0.96185 0.88378 0.98883 1.61566 1.48760 1.02192 1.12246 1.19456 0.94831 0.93567 0.83744 1.21437 1.08424 1.29589 0.95678 0.92396 1.25777 0.99496 0.95578 0.98382 1.70068 1.37804 1.37546 1.11966 0.85460 0.79391 0.78251 0.78308 1.19197 1.20433 1.20458 1.22158 0.95496 1.01186 0.91337 1.20591 0.83562 0.77438 0.87152 1.90678 1.24146 1.40544 1.83943 1.48229 1.22011 1.58704 1.06971 1.22126 0.99513 1.02306 0.79041 1.21922 0.80059 0.97997 1.02447 1.45356 1.12544 1.53401 1.24351 1.20434 0.89384 0.77695 0.82417 1.90797 1.21858 1.59373 1.75285 1.21973 0.81065 0.99867 1.00033 0.93527 0.93435 0.95421 0.90079 0.92773 0.91620 0.93430 0.92828 0.95905 0.97325 1.01057 0.92787 0.88062 0.91441 0.88379 0.87512 0.85409 0.91354 0.75577 0.86516 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 8.29 71.98 0.60 -3.40 16 2 C -0.09 -2.94 2.38 -10.79 -0.03 -2.97 16 3 C -0.14 -3.89 9.19 71.98 0.66 -3.23 16 4 C 0.07 2.86 4.23 86.30 0.36 3.23 16 5 N -0.52 -22.31 3.36 -905.37 -3.04 -25.35 16 6 C 0.21 10.91 4.69 85.56 0.40 11.31 16 7 C -0.51 -29.09 8.27 25.60 0.21 -28.88 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.01 0.31 5.46 84.65 0.46 0.78 16 10 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 11 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 C 0.03 0.98 4.22 85.56 0.36 1.34 16 16 C 0.52 15.15 6.53 87.66 0.57 15.73 16 17 O -0.52 -17.81 11.31 -3.05 -0.03 -17.85 16 18 N -0.62 -12.51 2.98 -823.23 -2.45 -14.96 16 19 C 0.09 1.24 6.53 86.23 0.56 1.80 16 20 C 0.10 0.92 7.34 86.54 0.63 1.55 16 21 N -0.71 -9.45 5.42 -467.07 -2.53 -11.99 16 22 C 0.51 10.32 7.84 87.80 0.69 11.01 16 23 O -0.59 -16.85 17.80 -3.03 -0.05 -16.90 16 24 C 0.10 1.75 6.41 85.46 0.55 2.29 16 25 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.05 2.04 6.86 -2.39 -0.02 2.03 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 2.72 4.53 -2.39 -0.01 2.71 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 2.43 7.07 -2.39 -0.02 2.41 16 33 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 34 H 0.01 0.48 7.64 -2.39 -0.02 0.46 16 35 H -0.03 -1.59 8.06 -2.39 -0.02 -1.61 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.10 3.24 7.53 -2.39 -0.02 3.23 16 38 H 0.07 2.03 6.59 -2.39 -0.02 2.01 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 1.69 7.06 -2.39 -0.02 1.68 16 41 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.41 4.44 8.80 -92.71 -0.82 3.63 16 44 H 0.12 2.27 6.07 -2.39 -0.01 2.25 16 45 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -73.41 353.54 0.41 -73.00 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.17 Total: 11.86 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.04 Total: 10.56 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -7.74 Total: -107.58 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.09 Total: -34.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.41 0.41 -73.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.830 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds