Wall clock time and date at job start Tue Mar 31 2020 03:22:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53002 * 109.46966 * 2 1
4 4 C 1.52992 * 109.47003 * 184.34018 * 3 2 1
5 5 C 1.53001 * 109.30228 * 173.99012 * 4 3 2
6 6 C 1.50253 * 109.38658 * 293.73315 * 4 3 2
7 7 O 1.21280 * 118.62376 * 317.35654 * 6 4 3
8 8 N 1.33724 * 122.75269 * 137.33689 * 6 4 3
9 9 C 1.46007 * 122.92292 * 358.33512 * 8 6 4
10 10 C 1.52995 * 110.04420 * 18.15847 * 9 8 6
11 11 N 1.46911 * 109.39033 * 54.25084 * 4 3 2
12 12 C 1.46905 * 110.99641 * 66.17744 * 11 4 3
13 13 C 1.50705 * 109.46710 * 182.34985 * 12 11 4
14 14 O 1.21276 * 120.00067 * 7.10854 * 13 12 11
15 15 N 1.34772 * 119.99640 * 187.38667 * 13 12 11
16 16 C 1.46500 * 119.99671 * 179.72486 * 15 13 12
17 17 C 1.50704 * 109.47039 * 180.02562 * 16 15 13
18 18 H 1.08008 * 119.99814 * 359.97438 * 17 16 15
19 19 C 1.37878 * 120.00149 * 179.97438 * 17 16 15
20 20 N 1.31510 * 119.99725 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 119.99798 * 179.97438 * 19 17 16
22 22 H 1.48493 * 109.47515 * 0.02562 * 21 19 17
23 23 H 1.48508 * 109.46922 * 120.00277 * 21 19 17
24 24 H 1.48496 * 109.47192 * 239.99868 * 21 19 17
25 25 H 1.08994 * 109.47194 * 300.00131 * 1 2 3
26 26 H 1.09007 * 109.46915 * 60.00375 * 1 2 3
27 27 H 1.09003 * 109.46673 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47048 * 240.00180 * 2 1 3
29 29 H 1.08999 * 109.47071 * 119.99869 * 2 1 3
30 30 H 1.08997 * 109.46785 * 64.33931 * 3 2 1
31 31 H 1.09001 * 109.46750 * 304.34106 * 3 2 1
32 32 H 1.09000 * 109.47172 * 298.42702 * 5 4 3
33 33 H 1.08996 * 109.46729 * 58.42316 * 5 4 3
34 34 H 1.08999 * 109.47156 * 178.42313 * 5 4 3
35 35 H 0.96995 * 118.53392 * 178.31102 * 8 6 4
36 36 H 1.09005 * 109.37547 * 138.34151 * 9 8 6
37 37 H 1.09007 * 109.37378 * 257.98432 * 9 8 6
38 38 H 1.09006 * 109.58825 * 189.93050 * 10 9 8
39 39 H 1.09003 * 109.60794 * 69.47354 * 10 9 8
40 40 H 1.08993 * 109.47038 * 62.34689 * 12 11 4
41 41 H 1.09001 * 109.46897 * 302.34924 * 12 11 4
42 42 H 0.97002 * 120.00111 * 359.72390 * 15 13 12
43 43 H 1.08998 * 109.46871 * 299.99406 * 16 15 13
44 44 H 1.08999 * 109.47445 * 59.99927 * 16 15 13
45 45 H 0.97003 * 119.99506 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5660 1.4439 -0.1092
5 6 4.0610 2.8838 -0.2598
6 6 4.1556 0.8414 1.1346
7 8 3.6849 1.1498 2.2090
8 7 5.1772 -0.0210 1.1066
9 6 5.7911 -0.4839 -0.1347
10 6 5.4293 0.4605 -1.2827
11 7 3.9716 0.6634 -1.2858
12 6 3.5335 1.3160 -2.5269
13 6 3.9158 0.4597 -3.7067
14 8 4.3785 -0.6470 -3.5280
15 7 3.7486 0.9260 -4.9600
16 6 4.1258 0.0959 -6.1067
17 6 3.8410 0.8439 -7.3837
18 1 3.4206 1.8380 -7.3449
19 6 4.1171 0.2591 -8.6014
20 7 4.6294 -0.9511 -8.6486
21 14 3.7634 1.1861 -10.1841
22 1 3.1935 2.5186 -9.8606
23 1 5.0248 1.3600 -10.9484
24 1 2.7914 0.4167 -11.0017
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8900
30 1 1.7415 1.9334 0.9263
31 1 1.6145 1.9783 -0.8486
32 1 3.6527 3.3146 -1.1740
33 1 3.7330 3.4722 0.5971
34 1 5.1498 2.8904 -0.3097
35 1 5.5262 -0.3534 1.9483
36 1 6.8742 -0.5094 -0.0149
37 1 5.4307 -1.4868 -0.3642
38 1 5.7391 0.0195 -2.2301
39 1 5.9313 1.4176 -1.1410
40 1 4.0141 2.2903 -2.6142
41 1 2.4514 1.4451 -2.5071
42 1 3.3785 1.8111 -5.1029
43 1 5.1891 -0.1374 -6.0522
44 1 3.5496 -0.8292 -6.0909
45 1 4.8240 -1.3623 -9.5053
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000782658917.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:16
Heat of formation + Delta-G solvation = -69.458961 kcal
Electronic energy + Delta-G solvation = -25437.110760 eV
Core-core repulsion = 21875.468054 eV
Total energy + Delta-G solvation = -3561.642706 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.19484 -38.99415 -37.22494 -35.89433 -34.27300 -33.66863 -32.39048 -31.25995
-29.46785 -27.66189 -26.98716 -26.20253 -23.53552 -22.82175 -22.06754 -21.29799
-19.72197 -18.09577 -17.85434 -17.37460 -16.65060 -15.81723 -15.68027 -15.30993
-15.05617 -14.75513 -14.67405 -14.55856 -14.13776 -13.95488 -13.58585 -13.09229
-12.97470 -12.75691 -12.70298 -12.45136 -12.09659 -12.02219 -11.92258 -11.77124
-11.48514 -11.21710 -11.02970 -10.99379 -10.83788 -10.77784 -10.51689 -10.35535
-9.85853 -9.42934 -9.19165 -9.05521 -8.78457 -8.40420 -7.93163 -6.21506
-4.28459 2.52049 3.12873 3.20173 3.26682 3.27680 3.30126 3.44304
4.13718 4.27730 4.33952 4.60142 4.73692 4.76212 5.01398 5.11902
5.15080 5.15825 5.23941 5.27790 5.35947 5.40858 5.44647 5.51708
5.58928 5.69532 5.75632 5.83243 5.87776 5.92190 5.98445 6.12735
6.30227 6.49817 6.57953 6.74274 6.87897 7.16974 7.25353 7.36795
7.45965 7.61648 7.91876 8.10946 8.55758 8.72918 9.02847 9.38518
10.88644
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.022885 B = 0.003444 C = 0.003271
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1223.225839 B = 8128.920069 C = 8558.394193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.121 4.121
3 C -0.096 4.096
4 C 0.094 3.906
5 C -0.179 4.179
6 C 0.540 3.460
7 O -0.553 6.553
8 N -0.718 5.718
9 C 0.118 3.882
10 C 0.021 3.979
11 N -0.496 5.496
12 C 0.027 3.973
13 C 0.499 3.501
14 O -0.538 6.538
15 N -0.712 5.712
16 C 0.251 3.749
17 C -0.544 4.544
18 H 0.063 0.937
19 C 0.064 3.936
20 N -0.885 5.885
21 Si 0.903 3.097
22 H -0.272 1.272
23 H -0.282 1.282
24 H -0.282 1.282
25 H 0.049 0.951
26 H 0.053 0.947
27 H 0.052 0.948
28 H 0.082 0.918
29 H 0.054 0.946
30 H 0.078 0.922
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.073 0.927
34 H 0.061 0.939
35 H 0.398 0.602
36 H 0.078 0.922
37 H 0.080 0.920
38 H 0.123 0.877
39 H 0.040 0.960
40 H 0.064 0.936
41 H 0.106 0.894
42 H 0.390 0.610
43 H 0.026 0.974
44 H 0.027 0.973
45 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.104 5.881 16.833 17.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.158 4.158
3 C -0.134 4.134
4 C 0.001 3.999
5 C -0.238 4.238
6 C 0.326 3.674
7 O -0.431 6.431
8 N -0.370 5.370
9 C -0.006 4.006
10 C -0.107 4.107
11 N -0.221 5.221
12 C -0.104 4.104
13 C 0.283 3.717
14 O -0.417 6.417
15 N -0.361 5.361
16 C 0.131 3.869
17 C -0.582 4.582
18 H 0.081 0.919
19 C -0.140 4.140
20 N -0.522 5.522
21 Si 0.730 3.270
22 H -0.196 1.196
23 H -0.208 1.208
24 H -0.208 1.208
25 H 0.068 0.932
26 H 0.072 0.928
27 H 0.071 0.929
28 H 0.101 0.899
29 H 0.073 0.927
30 H 0.096 0.904
31 H 0.090 0.910
32 H 0.095 0.905
33 H 0.092 0.908
34 H 0.080 0.920
35 H 0.233 0.767
36 H 0.097 0.903
37 H 0.098 0.902
38 H 0.140 0.860
39 H 0.059 0.941
40 H 0.082 0.918
41 H 0.124 0.876
42 H 0.222 0.778
43 H 0.044 0.956
44 H 0.045 0.955
45 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -1.254 4.684 17.169 17.841
hybrid contribution 0.308 1.450 -0.852 1.710
sum -0.947 6.134 16.316 17.457
Atomic orbital electron populations
1.21759 0.96177 1.01491 1.01310 1.21457 0.95138 0.96062 1.03154
1.21596 0.90341 0.98670 1.02798 1.21240 0.97623 0.92344 0.88672
1.22419 1.01870 0.95639 1.03841 1.19817 0.78996 0.78155 0.90422
1.90720 1.60512 1.61358 1.30467 1.45610 1.34909 1.46203 1.10249
1.21507 0.97316 0.99111 0.82708 1.22813 0.87743 0.98518 1.01586
1.62414 1.13493 1.46139 1.00098 1.22181 1.02825 0.96262 0.89123
1.20214 0.79696 0.87546 0.84258 1.90625 1.45118 1.20545 1.85409
1.46473 1.63137 1.20216 1.06273 1.19101 0.96186 0.90631 0.81028
1.21260 1.44137 1.02296 0.90526 0.91866 1.24944 0.94695 0.94941
0.99381 1.69979 1.42329 1.13844 1.26067 0.86373 0.78079 0.79751
0.82784 1.19634 1.20806 1.20768 0.93205 0.92826 0.92884 0.89937
0.92676 0.90367 0.91022 0.90507 0.90810 0.91986 0.76709 0.90330
0.90218 0.85954 0.94147 0.91808 0.87583 0.77758 0.95559 0.95465
0.92477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16
2 C -0.12 -1.47 5.55 -26.73 -0.15 -1.62 16
3 C -0.10 -1.08 3.71 -26.73 -0.10 -1.18 16
4 C 0.09 1.10 0.33 -132.97 -0.04 1.06 16
5 C -0.18 -1.78 7.70 37.16 0.29 -1.49 16
6 C 0.54 7.05 5.73 -11.67 -0.07 6.99 16
7 O -0.55 -8.71 16.94 5.56 0.09 -8.61 16
8 N -0.72 -7.85 5.52 -61.05 -0.34 -8.19 16
9 C 0.12 1.22 7.39 -4.31 -0.03 1.19 16
10 C 0.02 0.26 5.07 -3.67 -0.02 0.24 16
11 N -0.50 -6.30 3.14 -221.74 -0.70 -7.00 16
12 C 0.03 0.34 4.63 -4.97 -0.02 0.32 16
13 C 0.50 8.88 7.27 -10.98 -0.08 8.80 16
14 O -0.54 -11.51 14.25 5.56 0.08 -11.43 16
15 N -0.71 -13.74 5.55 -61.47 -0.34 -14.08 16
16 C 0.25 6.31 5.43 -5.19 -0.03 6.28 16
17 C -0.54 -14.19 9.28 -34.44 -0.32 -14.51 16
18 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16
19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
20 N -0.88 -25.37 13.29 55.43 0.74 -24.63 16
21 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16
22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16
23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16
27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
28 H 0.08 1.15 7.30 -51.93 -0.38 0.77 16
29 H 0.05 0.74 7.56 -51.93 -0.39 0.35 16
30 H 0.08 0.91 7.61 -51.93 -0.40 0.52 16
31 H 0.07 0.70 6.78 -51.93 -0.35 0.35 16
32 H 0.08 0.67 6.26 -51.93 -0.32 0.34 16
33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16
35 H 0.40 3.70 8.84 -40.82 -0.36 3.34 16
36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
38 H 0.12 1.82 5.43 -51.93 -0.28 1.53 16
39 H 0.04 0.45 6.26 -51.93 -0.32 0.12 16
40 H 0.06 0.69 6.31 -51.93 -0.33 0.36 16
41 H 0.11 1.21 6.49 -51.93 -0.34 0.87 16
42 H 0.39 6.41 8.32 -40.82 -0.34 6.07 16
43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16
45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16
LS Contribution 351.72 15.07 5.30 5.30
Total: -1.00 -31.89 351.72 -7.56 -39.45
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: -7.07 Total: 7.44 kcal
Atomic # 6 Polarization: 6.79 SS G_CDS: -0.30 Total: 6.49 kcal
Atomic # 7 Polarization: -53.26 SS G_CDS: -0.64 Total: -53.90 kcal
Atomic # 8 Polarization: -20.22 SS G_CDS: 0.17 Total: -20.04 kcal
Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -31.89 -7.56 -39.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000782658917.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.013 kcal
(2) G-P(sol) polarization free energy of solvation -31.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.900 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds