Wall clock time and date at job start Tue Mar 31 2020 03:22:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53002 * 109.46966 * 2 1
4 4 C 1.52992 * 109.47003 * 184.34018 * 3 2 1
5 5 C 1.53001 * 109.30228 * 173.99012 * 4 3 2
6 6 C 1.50253 * 109.38658 * 293.73315 * 4 3 2
7 7 O 1.21280 * 118.62376 * 317.35654 * 6 4 3
8 8 N 1.33724 * 122.75269 * 137.33689 * 6 4 3
9 9 C 1.46007 * 122.92292 * 358.33512 * 8 6 4
10 10 C 1.52995 * 110.04420 * 18.15847 * 9 8 6
11 11 N 1.46911 * 109.39033 * 54.25084 * 4 3 2
12 12 C 1.46905 * 110.99641 * 66.17744 * 11 4 3
13 13 C 1.50705 * 109.46710 * 182.34985 * 12 11 4
14 14 O 1.21276 * 120.00067 * 7.10854 * 13 12 11
15 15 N 1.34772 * 119.99640 * 187.38667 * 13 12 11
16 16 C 1.46500 * 119.99671 * 179.72486 * 15 13 12
17 17 C 1.50704 * 109.47039 * 180.02562 * 16 15 13
18 18 H 1.08008 * 119.99814 * 359.97438 * 17 16 15
19 19 C 1.37878 * 120.00149 * 179.97438 * 17 16 15
20 20 N 1.31510 * 119.99725 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 119.99798 * 179.97438 * 19 17 16
22 22 H 1.48493 * 109.47515 * 0.02562 * 21 19 17
23 23 H 1.48508 * 109.46922 * 120.00277 * 21 19 17
24 24 H 1.48496 * 109.47192 * 239.99868 * 21 19 17
25 25 H 1.08994 * 109.47194 * 300.00131 * 1 2 3
26 26 H 1.09007 * 109.46915 * 60.00375 * 1 2 3
27 27 H 1.09003 * 109.46673 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47048 * 240.00180 * 2 1 3
29 29 H 1.08999 * 109.47071 * 119.99869 * 2 1 3
30 30 H 1.08997 * 109.46785 * 64.33931 * 3 2 1
31 31 H 1.09001 * 109.46750 * 304.34106 * 3 2 1
32 32 H 1.09000 * 109.47172 * 298.42702 * 5 4 3
33 33 H 1.08996 * 109.46729 * 58.42316 * 5 4 3
34 34 H 1.08999 * 109.47156 * 178.42313 * 5 4 3
35 35 H 0.96995 * 118.53392 * 178.31102 * 8 6 4
36 36 H 1.09005 * 109.37547 * 138.34151 * 9 8 6
37 37 H 1.09007 * 109.37378 * 257.98432 * 9 8 6
38 38 H 1.09006 * 109.58825 * 189.93050 * 10 9 8
39 39 H 1.09003 * 109.60794 * 69.47354 * 10 9 8
40 40 H 1.08993 * 109.47038 * 62.34689 * 12 11 4
41 41 H 1.09001 * 109.46897 * 302.34924 * 12 11 4
42 42 H 0.97002 * 120.00111 * 359.72390 * 15 13 12
43 43 H 1.08998 * 109.46871 * 299.99406 * 16 15 13
44 44 H 1.08999 * 109.47445 * 59.99927 * 16 15 13
45 45 H 0.97003 * 119.99506 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5660 1.4439 -0.1092
5 6 4.0610 2.8838 -0.2598
6 6 4.1556 0.8414 1.1346
7 8 3.6849 1.1498 2.2090
8 7 5.1772 -0.0210 1.1066
9 6 5.7911 -0.4839 -0.1347
10 6 5.4293 0.4605 -1.2827
11 7 3.9716 0.6634 -1.2858
12 6 3.5335 1.3160 -2.5269
13 6 3.9158 0.4597 -3.7067
14 8 4.3785 -0.6470 -3.5280
15 7 3.7486 0.9260 -4.9600
16 6 4.1258 0.0959 -6.1067
17 6 3.8410 0.8439 -7.3837
18 1 3.4206 1.8380 -7.3449
19 6 4.1171 0.2591 -8.6014
20 7 4.6294 -0.9511 -8.6486
21 14 3.7634 1.1861 -10.1841
22 1 3.1935 2.5186 -9.8606
23 1 5.0248 1.3600 -10.9484
24 1 2.7914 0.4167 -11.0017
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8900
30 1 1.7415 1.9334 0.9263
31 1 1.6145 1.9783 -0.8486
32 1 3.6527 3.3146 -1.1740
33 1 3.7330 3.4722 0.5971
34 1 5.1498 2.8904 -0.3097
35 1 5.5262 -0.3534 1.9483
36 1 6.8742 -0.5094 -0.0149
37 1 5.4307 -1.4868 -0.3642
38 1 5.7391 0.0195 -2.2301
39 1 5.9313 1.4176 -1.1410
40 1 4.0141 2.2903 -2.6142
41 1 2.4514 1.4451 -2.5071
42 1 3.3785 1.8111 -5.1029
43 1 5.1891 -0.1374 -6.0522
44 1 3.5496 -0.8292 -6.0909
45 1 4.8240 -1.3623 -9.5053
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000782658917.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:15
Heat of formation + Delta-G solvation = -94.263903 kcal
Electronic energy + Delta-G solvation = -25438.186383 eV
Core-core repulsion = 21875.468054 eV
Total energy + Delta-G solvation = -3562.718329 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.19327 -40.40717 -38.37629 -36.82077 -36.06288 -34.66185 -34.29822 -32.21877
-30.66144 -29.18051 -27.90080 -27.40223 -25.01521 -23.84139 -23.51099 -22.23553
-21.25717 -19.14949 -19.00559 -18.54675 -18.05503 -17.19278 -17.04282 -16.67114
-16.38269 -16.01434 -15.84627 -15.63094 -15.30451 -15.11276 -14.70867 -14.33978
-14.20502 -13.98806 -13.89548 -13.66447 -13.50742 -13.29161 -12.90476 -12.84676
-12.75160 -12.69328 -12.44689 -12.22066 -12.18779 -11.94779 -11.67798 -11.47016
-11.41773 -10.87387 -10.77883 -10.57528 -10.10894 -9.74624 -9.35147 -8.26492
-6.41947 1.45673 1.45944 1.52252 1.59203 1.83192 2.20149 2.26415
2.43680 2.94106 3.09199 3.36670 3.71727 3.77663 3.85434 4.04606
4.12301 4.23046 4.28274 4.34421 4.41289 4.52882 4.55121 4.64601
4.69931 4.84545 4.87665 4.94216 4.97646 5.00098 5.14931 5.16914
5.25570 5.30938 5.38365 5.52478 5.54402 5.66104 5.72596 5.81837
5.89986 5.95687 6.22298 6.70047 6.99453 7.15285 7.27757 7.57079
8.85610
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.022885 B = 0.003444 C = 0.003271
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1223.225839 B = 8128.920069 C = 8558.394193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.115 4.115
3 C -0.094 4.094
4 C 0.097 3.903
5 C -0.176 4.176
6 C 0.534 3.466
7 O -0.584 6.584
8 N -0.711 5.711
9 C 0.121 3.879
10 C 0.021 3.979
11 N -0.511 5.511
12 C 0.041 3.959
13 C 0.498 3.502
14 O -0.578 6.578
15 N -0.708 5.708
16 C 0.269 3.731
17 C -0.553 4.553
18 H 0.084 0.916
19 C 0.005 3.995
20 N -0.931 5.931
21 Si 0.980 3.020
22 H -0.253 1.253
23 H -0.280 1.280
24 H -0.281 1.281
25 H 0.056 0.944
26 H 0.062 0.938
27 H 0.050 0.950
28 H 0.063 0.937
29 H 0.035 0.965
30 H 0.075 0.925
31 H 0.092 0.908
32 H 0.095 0.905
33 H 0.075 0.925
34 H 0.063 0.937
35 H 0.405 0.595
36 H 0.108 0.892
37 H 0.067 0.933
38 H 0.094 0.906
39 H 0.057 0.943
40 H 0.095 0.905
41 H 0.128 0.872
42 H 0.408 0.592
43 H -0.010 1.010
44 H -0.014 1.014
45 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.787 8.522 16.827 18.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.153 4.153
3 C -0.132 4.132
4 C 0.004 3.996
5 C -0.235 4.235
6 C 0.321 3.679
7 O -0.465 6.465
8 N -0.361 5.361
9 C -0.003 4.003
10 C -0.107 4.107
11 N -0.236 5.236
12 C -0.089 4.089
13 C 0.285 3.715
14 O -0.458 6.458
15 N -0.359 5.359
16 C 0.146 3.854
17 C -0.591 4.591
18 H 0.102 0.898
19 C -0.195 4.195
20 N -0.569 5.569
21 Si 0.804 3.196
22 H -0.176 1.176
23 H -0.206 1.206
24 H -0.207 1.207
25 H 0.076 0.924
26 H 0.081 0.919
27 H 0.069 0.931
28 H 0.081 0.919
29 H 0.054 0.946
30 H 0.094 0.906
31 H 0.111 0.889
32 H 0.114 0.886
33 H 0.094 0.906
34 H 0.082 0.918
35 H 0.242 0.758
36 H 0.126 0.874
37 H 0.085 0.915
38 H 0.112 0.888
39 H 0.075 0.925
40 H 0.113 0.887
41 H 0.146 0.854
42 H 0.243 0.757
43 H 0.008 0.992
44 H 0.004 0.996
45 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -1.938 7.353 17.193 18.799
hybrid contribution 0.558 0.535 -0.771 1.092
sum -1.379 7.888 16.422 18.271
Atomic orbital electron populations
1.21740 0.94906 1.01690 1.02133 1.21361 0.96249 0.96508 1.01161
1.21613 0.90090 0.97936 1.03568 1.21255 0.97835 0.93183 0.87328
1.22423 1.02062 0.94125 1.04871 1.20129 0.79062 0.78233 0.90522
1.90704 1.61555 1.62666 1.31550 1.45586 1.34290 1.45403 1.10862
1.21528 0.98932 0.97885 0.81928 1.22742 0.87748 0.99429 1.00779
1.62369 1.13875 1.47010 1.00371 1.22105 1.04274 0.95926 0.86598
1.21103 0.78100 0.87473 0.84846 1.90619 1.46500 1.22714 1.85992
1.46172 1.63716 1.20458 1.05537 1.18492 0.93264 0.90151 0.83464
1.21670 1.43619 1.03043 0.90756 0.89830 1.25999 0.94277 0.95717
1.03462 1.70135 1.43783 1.15906 1.27113 0.85178 0.77799 0.78932
0.77723 1.17601 1.20629 1.20721 0.92442 0.91865 0.93091 0.91874
0.94640 0.90593 0.88932 0.88633 0.90628 0.91792 0.75809 0.87354
0.91515 0.88758 0.92464 0.88701 0.85430 0.75684 0.99241 0.99582
0.92375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.92 9.91 71.98 0.71 -2.20 16
2 C -0.12 -2.71 5.55 30.60 0.17 -2.54 16
3 C -0.09 -1.92 3.71 30.59 0.11 -1.80 16
4 C 0.10 2.06 0.33 2.64 0.00 2.06 16
5 C -0.18 -2.94 7.70 71.98 0.55 -2.38 16
6 C 0.53 13.34 5.73 87.68 0.50 13.84 16
7 O -0.58 -17.97 16.94 -3.03 -0.05 -18.02 16
8 N -0.71 -14.80 5.52 -466.06 -2.57 -17.37 16
9 C 0.12 2.40 7.39 86.47 0.64 3.04 16
10 C 0.02 0.49 5.07 86.25 0.44 0.92 16
11 N -0.51 -12.21 3.14 -855.46 -2.69 -14.90 16
12 C 0.04 0.95 4.63 85.56 0.40 1.35 16
13 C 0.50 17.54 7.27 87.66 0.64 18.18 16
14 O -0.58 -25.45 14.25 -3.02 -0.04 -25.49 16
15 N -0.71 -27.05 5.55 -466.79 -2.59 -29.64 16
16 C 0.27 13.95 5.43 85.63 0.46 14.42 16
17 C -0.55 -28.75 9.28 25.60 0.24 -28.51 16
18 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16
19 C 0.01 0.27 5.46 84.66 0.46 0.73 16
20 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16
21 Si 0.98 41.06 29.54 68.60 2.03 43.09 16
22 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16
23 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16
24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
25 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16
26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
28 H 0.06 1.73 7.30 -2.39 -0.02 1.71 16
29 H 0.03 0.95 7.56 -2.39 -0.02 0.94 16
30 H 0.08 1.63 7.61 -2.39 -0.02 1.61 16
31 H 0.09 1.49 6.78 -2.39 -0.02 1.47 16
32 H 0.10 1.23 6.26 -2.39 -0.01 1.21 16
33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.06 1.05 6.53 -2.39 -0.02 1.04 16
35 H 0.41 7.17 8.84 -92.71 -0.82 6.35 16
36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16
37 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16
38 H 0.09 2.82 5.43 -2.38 -0.01 2.81 16
39 H 0.06 1.14 6.26 -2.39 -0.01 1.12 16
40 H 0.10 1.67 6.31 -2.39 -0.02 1.65 16
41 H 0.13 2.47 6.49 -2.39 -0.02 2.45 16
42 H 0.41 12.58 8.32 -92.71 -0.77 11.81 16
43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16
44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16
45 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16
Total: -1.00 -71.78 351.72 -0.88 -72.67
By element:
Atomic # 1 Polarization: 27.55 SS G_CDS: -0.58 Total: 26.97 kcal
Atomic # 6 Polarization: 11.76 SS G_CDS: 5.33 Total: 17.09 kcal
Atomic # 7 Polarization: -108.73 SS G_CDS: -7.57 Total: -116.30 kcal
Atomic # 8 Polarization: -43.42 SS G_CDS: -0.09 Total: -43.52 kcal
Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal
Total: -71.78 -0.88 -72.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000782658917.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.597 kcal
(2) G-P(sol) polarization free energy of solvation -71.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.264 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds